Merge pull request #381 from c-martinez/reuse

Make compliant with REUSE specification

.gitattributes

@@ -1 +1,5 @@
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 docker-compose.yml merge=ours

.gitignore

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 node_modules
 .*!.gitignore
 */.DS_Store
@@ -20,3 +24,18 @@ bin/
 share/
 .idea
 .pytest_cache
+.eggs/
+.vscode/
+.ipynb_checkpoints/
+ssl-certificates/
+testQueries/
+grlc.egg-info/
+src/config.ini
+src/FileLoaderTesting.ipynb
+Dockerfile2
+FileLoaders.ipynb
+ReleaseProcedure.md
+TODOs.md
+TwitterAPIKeys.md
+config.ini
+ink_ext_XXXXXX_img0.png

.reuse/dep5

@@ -0,0 +1,5 @@
+Format: https://www.debian.org/doc/packaging-manuals/copyright-format/1.0/
+
+Files: tests/repo/endpoint.txt tests/repo/*.rq tests/repo/*.json tests/repo/*.sparql tests/repo/*.tpf tests/repo/*.yml src/static/toolinfo.json src/static/*.png src/static/favicon.ico requirements-test.txt requirements.txt docker-assets/assets/runtime/functions docker-assets/assets/runtime/env-defaults docker-assets/assets/runtime/configs/nginx/grlc doc/notebooks/GrlcFromNotebook.ipynb doc/img/*.png doc/img/grlc_logo_01.eps CITATION.cff .zenodo.json .travis.yml .github/workflows/tweet-release.yml .dependabot/config.yml
+Copyright: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+License: MIT

.travis/before_deploy.sh

@@ -1,5 +1,9 @@
 #!/bin/bash
 
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 # Deactivate testing virtualenv and reactivate original one
 if [[ $TRAVIS_BUILD_STAGE_NAME == 'Deploy' ]]; then
   deactivate

.travis/before_install.sh

@@ -1,5 +1,9 @@
 #!/bin/bash
 
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 # Store location of original virtualenv so we can reactivate it on deploy
 if [[ $TRAVIS_BUILD_STAGE_NAME == 'Deploy' ]]; then
   ORIG_ENV="$(dirname $(which python))/activate"

.travis/install.sh

@@ -1,5 +1,9 @@
 #!/bin/bash
 
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 if [[ $TRAVIS_OS_NAME == 'osx' ]]; then
   pyenv global $PYENV_VERSION
   if [[ $PYENV_VERSION == 2* ]]; then

.travis/run.sh

@@ -1,5 +1,9 @@
 #!/bin/bash
 
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 if [[ $TRAVIS_BUILD_STAGE_NAME == 'Deploy' ]]; then
   source venv/bin/activate
 fi

CODE_OF_CONDUCT.md

@@ -1,3 +1,9 @@
+<!--
+SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+
+SPDX-License-Identifier: MIT
+-->
+
 # Contributor Covenant Code of Conduct
 
 ## Our Pledge

CONTRIBUTING.md

@@ -1,3 +1,9 @@
+<!--
+SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+
+SPDX-License-Identifier: MIT
+-->
+
 Thank you very much for your interest in contributing to grlc! It's people like you that truly make the Semantic Web more accessible to everyone :)
 
 ## Communication channels

CONTRIBUTORS.md

@@ -1,3 +1,9 @@
+<!--
+SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+
+SPDX-License-Identifier: MIT
+-->
+
 # Contributors
 This is a list of all people who have contributed to grlc. Big thanks to everyone.
 

Dockerfile

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 FROM python:3.6.8
 MAINTAINER [email protected]
 

LICENSES/MIT.txt

@@ -0,0 +1,9 @@
+MIT License
+
+Copyright (c) <year> <copyright holders>
+
+Permission is hereby granted, free of charge, to any person obtaining a copy of this software and associated documentation files (the "Software"), to deal in the Software without restriction, including without limitation the rights to use, copy, modify, merge, publish, distribute, sublicense, and/or sell copies of the Software, and to permit persons to whom the Software is furnished to do so, subject to the following conditions:
+
+The above copyright notice and this permission notice shall be included in all copies or substantial portions of the Software.
+
+THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY, FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM, OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE SOFTWARE.

MANIFEST.in

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 include requirements.txt
 include requirements-test.txt
 include CITATION.cff

README.md

@@ -1,3 +1,9 @@
+<!--
+SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+
+SPDX-License-Identifier: MIT
+-->
+
 <p algin="center"><img src="https://raw.githubusercontent.com/CLARIAH/grlc/master/src/static/grlc_logo_01.png" width="250px"></p>
 
 [![PyPI version](https://badge.fury.io/py/grlc.svg)](https://badge.fury.io/py/grlc)

bin/grlc-server

@@ -1,4 +1,9 @@
 #!/usr/bin/env python
+
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 """Grlc server.
 
 Usage:

config.default.ini

@@ -1,3 +1,7 @@
+; SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+;
+; SPDX-License-Identifier: MIT
+
 [auth]
 github_access_token = xxx
 

docker-assets/assets/build/.gitattributes

@@ -1 +1,5 @@
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 install.sh merge=ours

docker-assets/assets/build/install.sh

@@ -1,4 +1,9 @@
 #!/bin/bash
+
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 set -e
 
 

docker-assets/entrypoint.sh

@@ -1,4 +1,9 @@
 #!/bin/bash
+
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 set -e
 source ${GRLC_RUNTIME_DIR}/functions
 

paper.bib

@@ -1,3 +1,9 @@
+@Comment{
+SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+
+SPDX-License-Identifier: MIT
+}
+
 @article{Espinoza2021,
 title = {Crossing the chasm between ontology engineering and application development: A survey},
 journal = {Journal of Web Semantics},

paper.md

@@ -1,3 +1,9 @@
+<!--
+SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+
+SPDX-License-Identifier: MIT
+-->
+
 ---
 title: 'grlc: the git repository linked data API constructor.'
 tags:

setup.cfg

@@ -1,2 +1,6 @@
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 [metadata]
 description-file = README.md

setup.py

@@ -1,4 +1,9 @@
 #!/usr/bin/env python
+
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 # -*- coding: iso-8859-15 -*-
 
 import codecs

src/__init__.py

@@ -1 +1,5 @@
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 from .__version__ import __version__

src/__version__.py

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 import os
 import sys
 import yaml

src/fileLoaders.py

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 import grlc.static as static
 from grlc.queryTypes import qType
 import grlc.glogging as glogging

src/glogging.py

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 import logging
 
 import grlc.static as static

src/gquery.py

@@ -1,5 +1,9 @@
 #!/usr/bin/env python
 
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 # gquery.py: functions that deal with / transform SPARQL queries in grlc
 
 import yaml

src/pagination.py

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 from urllib.parse import urlparse, urlunparse, parse_qsl, urlencode, ParseResult
 
 def getSwaggerPaginationDef(resultsPerPage):

src/prov.py

@@ -1,5 +1,9 @@
 #!/usr/bin/env python
 
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 # prov.py: class generating grlc related W3C prov triples
 
 from rdflib import Graph, URIRef, Namespace, RDF, Literal

src/queryTypes.py

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 """Definition of grlc query types."""
 
 qType = {

src/server.py

@@ -1,5 +1,9 @@
 #!/usr/bin/env python
 
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 # server.py: the grlc server
 
 from flask import Flask, request, jsonify, render_template, make_response

src/sparql.py

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 from SPARQLWrapper import SPARQLWrapper, CSV, JSON
 from flask import jsonify
 from collections import defaultdict

src/static.py

@@ -1,5 +1,9 @@
 #!/usr/bin/env python
 
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 # static.py: static values for the grlc Server
 import os
 from configparser import ConfigParser

src/static/css/grlc.css

@@ -1,3 +1,9 @@
+/*
+ * SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+ *
+ * SPDX-License-Identifier: MIT
+ */
+
 /* Adapted from bootstrap's cover.css */
 
 /*

src/static/js/grlc-api.js

@@ -1,3 +1,7 @@
+// SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+//
+// SPDX-License-Identifier: MIT
+
 /**
  * Log to JavaScript console.
  */

src/static/js/grlc-layout.js

@@ -1,3 +1,7 @@
+// SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+//
+// SPDX-License-Identifier: MIT
+
 // Create the layout component
 class GrlcLayout extends React.Component {
   render() {

src/swagger.py

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 import json
 import grlc.utils
 import grlc.gquery as gquery

src/templates/api-docs.html

@@ -1,3 +1,9 @@
+<!--
+SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+
+SPDX-License-Identifier: MIT
+-->
+
 <!DOCTYPE html>
 <html lang="en">
   <head>

src/templates/index.html

@@ -1,3 +1,9 @@
+<!--
+SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+
+SPDX-License-Identifier: MIT
+-->
+
 <!DOCTYPE html>
 <html lang="en">
   <head>

src/util.py

@@ -1,5 +1,9 @@
 #!/usr/bin/env python
 
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 # util.py: grlc utility functions
 
 import datetime

src/utils.py

@@ -1,3 +1,7 @@
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT
+
 import grlc.static as static
 import grlc.gquery as gquery
 import grlc.pagination as pageUtils

tests/__init__.py

@@ -0,0 +1,3 @@
+# SPDX-FileCopyrightText: 2022 Albert Meroño, Rinke Hoekstra, Carlos Martínez
+#
+# SPDX-License-Identifier: MIT