Inserting Pseudo-CHILD WP3 data into Beacon-2.x

This script will insert the CHILD pseudodata and some sample variant data into the postgres database backing the reference Beacon-2.x implementation.

• Start and run the Beacon-2.x reference deployment here
• Insert the corresponding CHILD data with:

gunzip 1000genomes.vcf
python3 ./insert_child.py --vcffile 1000genomes.vcf fake_child.json

The fake_child data should be replaced with the WP3-mapped child pseudodata. The VCF file is from 1000 genomes.