Added test case count_paired_wide_contig with tests "count" in --pair…

…ed mode
CGATOxford · Sep 12, 2017 · cfd50cd · cfd50cd
1 parent 0cb9135
commit cfd50cd
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diff --git a/tests/count_paired_wide_contig.tsv b/tests/count_paired_wide_contig.tsv
@@ -0,0 +1,3 @@
+gene	count
+AAC73112	14
+AAC73113	50
diff --git a/tests/paired_contig.bam b/tests/paired_contig.bam
diff --git a/tests/tests.yaml b/tests/tests.yaml
@@ -106,6 +106,12 @@ count_tab_single:
       references: [count_tab.tsv]
       options: count_tab -L test.log
 
+count_paired_wide_contig:
+      stdin: paired_contig.bam
+      outputs: [stdout]
+      references: [count_paired_wide_contig.tsv]
+      options: count -L test.log  --random-seed=123456789 --method=directional --per-contig --paired --umi-separator="|" --wide-format-cell-counts
+
 # python 2 tests ##
 
 dedup_single_ignore: