bumping to python 3.9

Dockerfile

@@ -1,4 +1,4 @@
-FROM tiangolo/uwsgi-nginx-flask:python3.7
+FROM tiangolo/uwsgi-nginx-flask:python3.9
 
 ENV UWSGI_INI /app/uwsgi.ini
 RUN mkdir -p /home/nginx/.cloudvolume/secrets \

compile_reqs.sh

@@ -1 +1 @@
-docker run -v ${PWD}:/app caveconnectome/materializationengine:vLiveQuery9 /bin/bash -c "pip install pip-tools && pip-compile -v -r requirements.in"
+docker run -v ${PWD}:/app caveconnectome/materializationengine:py39 /bin/bash -c "pip install pip-tools && pip-compile -v -r requirements.in"

requirements.in

@@ -26,7 +26,9 @@ gcsfs>=0.8.0
 pyarrow==3.0.0
 flask_cors
 numpy>=1.20
-emannotationschemas>=5.8.0
+emannotationschemas>=5.11.0
 dynamicannotationdb>=5.7.2
 nglui>=2.10.1
 Flask-Limiter[redis]
+
+

requirements.txt

@@ -1,5 +1,5 @@
 #
-# This file is autogenerated by pip-compile with Python 3.7
+# This file is autogenerated by pip-compile with Python 3.9
 # by the following command:
 #
 #    pip-compile requirements.in
@@ -18,8 +18,6 @@ aniso8601==9.0.1
     # via flask-restx
 async-timeout==4.0.2
     # via aiohttp
-asynctest==0.13.0
-    # via aiohttp
 attrs==21.4.0
     # via
     #   aiohttp
@@ -42,8 +40,6 @@ brotli==1.0.9
     # via cloud-files
 brotlipy==0.7.0
     # via urllib3
-cached-property==1.5.2
-    # via kombu
 cachetools==5.0.0
     # via
     #   -r requirements.in
@@ -121,7 +117,7 @@ dracopy==1.0.1
     # via cloud-volume
 dynamicannotationdb==5.8.1
     # via -r requirements.in
-emannotationschemas==5.8.0
+emannotationschemas==5.11.0
     # via
     #   -r requirements.in
     #   dynamicannotationdb
@@ -130,7 +126,6 @@ fastremap==1.12.2
 flask==2.0.2
     # via
     #   -r requirements.in
-    #   emannotationschemas
     #   flask-admin
     #   flask-cors
     #   flask-limiter
@@ -139,25 +134,18 @@ flask==2.0.2
     #   flask-sqlalchemy
     #   middle-auth-client
 flask-accepts==0.18.4
-    # via
-    #   -r requirements.in
-    #   emannotationschemas
+    # via -r requirements.in
 flask-admin==1.6.0
-    # via
-    #   -r requirements.in
-    #   emannotationschemas
+    # via -r requirements.in
 flask-cors==3.0.10
-    # via
-    #   -r requirements.in
-    #   emannotationschemas
+    # via -r requirements.in
 flask-limiter[redis]==3.3.0
     # via -r requirements.in
 flask-marshmallow==0.14.0
     # via -r requirements.in
 flask-restx==0.5.1
     # via
     #   -r requirements.in
-    #   emannotationschemas
     #   flask-accepts
 flask-sqlalchemy==2.5.1
     # via -r requirements.in
@@ -167,7 +155,7 @@ frozenlist==1.3.0
     # via
     #   aiohttp
     #   aiosignal
-fsspec==2022.01.0
+fsspec==2022.1.0
     # via gcsfs
 furl==2.1.3
     # via middle-auth-client
@@ -224,20 +212,9 @@ idna==3.3
     #   urllib3
     #   yarl
 importlib-metadata==4.10.1
-    # via
-    #   alembic
-    #   celery
-    #   click
-    #   jsonschema
-    #   kombu
-    #   markdown
-    #   pluggy
-    #   pytest
-    #   redis
+    # via markdown
 importlib-resources==5.4.0
-    # via
-    #   alembic
-    #   limits
+    # via limits
 inflection==0.5.1
     # via python-jsonschema-objects
 iniconfig==1.1.1
@@ -269,7 +246,7 @@ jsonschema==3.2.0
     #   python-jsonschema-objects
 kombu==5.2.3
     # via celery
-limits==3.3.1
+limits[redis]==3.3.1
     # via flask-limiter
 mako==1.1.6
     # via alembic
@@ -329,6 +306,7 @@ numpy==1.21.5
     #   pandas
     #   pyarrow
     #   pyspng-seunglab
+    #   shapely
     #   simplejpeg
 oauthlib==3.2.0
     # via requests-oauthlib
@@ -348,7 +326,6 @@ pandas==1.3.5
     # via
     #   -r requirements.in
     #   caveclient
-    #   emannotationschemas
     #   nglui
 parso==0.8.3
     # via jedi
@@ -388,9 +365,7 @@ psutil==5.9.0
     #   -r requirements.in
     #   cloud-volume
 psycopg2-binary==2.9.1
-    # via
-    #   dynamicannotationdb
-    #   emannotationschemas
+    # via dynamicannotationdb
 ptyprocess==0.7.0
     # via pexpect
 py==1.11.0
@@ -429,19 +404,19 @@ python-dateutil==2.8.1
     # via
     #   botocore
     #   cloud-volume
-    #   emannotationschemas
     #   pandas
 python-jsonschema-objects==0.4.1
     # via cloud-volume
 pytz==2021.3
     # via
     #   celery
     #   dynamicannotationdb
-    #   emannotationschemas
     #   flask-restx
     #   pandas
 redis==4.1.4
-    # via middle-auth-client
+    # via
+    #   limits
+    #   middle-auth-client
 requests==2.26.0
     # via
     #   -r requirements.in
@@ -463,7 +438,7 @@ rsa==4.8
     #   google-auth
 s3transfer==0.5.1
     # via boto3
-shapely==1.8.1.post1
+shapely==2.0.3
     # via
     #   dynamicannotationdb
     #   emannotationschemas
@@ -510,14 +485,8 @@ traitlets==5.1.1
     #   matplotlib-inline
 typing-extensions==4.1.1
     # via
-    #   aiohttp
-    #   async-timeout
     #   flask-limiter
-    #   importlib-metadata
     #   limits
-    #   markdown-it-py
-    #   rich
-    #   yarl
 urllib3[brotli,secure]==1.26.8
     # via
     #   botocore
@@ -536,7 +505,6 @@ webcolors==1.12
     # via nglui
 werkzeug==2.0.2
     # via
-    #   emannotationschemas
     #   flask
     #   flask-accepts
     #   flask-restx