deploy: b0f3632

index.html

@@ -924,7 +924,7 @@ <h2 id="general-information">General Information<a class="headerlink" href="#gen
 for the most compute-intensive parts. The code is also accelerated in some places with OpenMP parallelization.</p>
 <p>Once compiled, the code generates 6 Fortran executables and 9 Python scripts, which can be run simultaneously except for the final extpar_consistency_check.exe, which is used to tie together all the external parameter results into one output file.</p>
 <p>Information about the latest changes can be found in the <a href="https://github.com/C2SM/extpar/releases" target="_blank">Release Notes on GitHub <span class="twemoji"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3m-2 16H5V5h7V3H5a2 2 0 0 0-2 2v14a2 2 0 0 0 2 2h14a2 2 0 0 0 2-2v-7h-2z"/></svg></span></a>.</p>
-<p>The technical and scientific documentation can be found in the <a href="user_manual.md">User and Implementation Guide</a>.</p>
+<p>The technical and scientific documentation can be found in the <a href="user_manual/">User and Implementation Guide</a>.</p>
 <h2 id="quick-start">Quick Start<a class="headerlink" href="#quick-start" title="Permanent link">&para;</a></h2>
 <h3 id="container">Container<a class="headerlink" href="#container" title="Permanent link">&para;</a></h3>
 <p>The easiest way to use EXTPAR is through the container provided with <a href="https://github.com/C2SM/extpar/blob/master/Dockerfile" target="_blank">Dockerfile <span class="twemoji"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3m-2 16H5V5h7V3H5a2 2 0 0 0-2 2v14a2 2 0 0 0 2 2h14a2 2 0 0 0 2-2v-7h-2z"/></svg></span></a>. 
@@ -1018,7 +1018,7 @@ <h5 id="option-1-pythonpath">Option 1: PYTHONPATH<a class="headerlink" href="#op
 <div class="highlight"><pre><span></span><code><span class="nb">cd</span><span class="w"> </span>bin
 ./extpar_aot_to_buffer.exe
 </code></pre></div>
-<p>For more detailed compilation instructions see: <a href="doc/compile_run.md">compile_run</a></p>
+<p>For more detailed compilation instructions see the <a href="compile_run/">Compile and Run</a> section.</p>
 <h5 id="option-2-build-and-install-a-python-package">Option 2: Build and install a python package<a class="headerlink" href="#option-2-build-and-install-a-python-package" title="Permanent link">&para;</a></h5>
 <p>Alternatively you can build a python package and install it to your libraries.
 This has the advantages that the executables can be ran from anywhere in the
@@ -1072,9 +1072,9 @@ <h2 id="testing">Testing<a class="headerlink" href="#testing" title="Permanent l
 <ul>
 <li>GCC</li>
 </ul>
-<p>For more information about how the testsuite can be run or new test added see <a href="docs/testing.md">testsuite-documentation</a></p>
+<p>For more information about how the testsuite can be run or new test added see the <a href="testing/">Testing</a> section.</p>
 <h2 id="information-for-developers">Information for Developers<a class="headerlink" href="#information-for-developers" title="Permanent link">&para;</a></h2>
-<p>In case you want to contribute to EXTPAR please have a look at our <a href="docs/development.md">coding rules and development workflow</a>.</p>
+<p>In case you want to contribute to EXTPAR please have a look at our <a href="development/">coding rules and development workflow</a>.</p>
 <h2 id="support">Support<a class="headerlink" href="#support" title="Permanent link">&para;</a></h2>
 <p>In the case of issues or questions, please create an <a href="https://github.com/C2SM/extpar/issues" target="_blank">issue on GitHub <span class="twemoji"><svg xmlns="http://www.w3.org/2000/svg" viewBox="0 0 24 24"><path d="M14 3v2h3.59l-9.83 9.83 1.41 1.41L19 6.41V10h2V3m-2 16H5V5h7V3H5a2 2 0 0 0-2 2v14a2 2 0 0 0 2 2h14a2 2 0 0 0 2-2v-7h-2z"/></svg></span></a>.</p>
 

user_manual/user_manual_03_fortran_modules/index.html

@@ -1327,7 +1327,7 @@ <h4 id="raw-landuse-data">Raw landuse data<a class="headerlink" href="#raw-landu
 and the number of land-use classes. The land-use classes differ for the
 three raw data sets and are described in more detail in
 <a href="#tab:land_use_classes">Table 4</a>.</p>
-<p><a name="#tab:land_use_classes"></a></p>
+<p><a name="tab:land_use_classes"></a></p>
 <table>
 <thead>
 <tr>
@@ -2025,7 +2025,7 @@ <h4 id="aggregation-of-the-raw-land-use-data-to-the-target-field">Aggregation of
 associated lookup table names in
 <a href="#tab:look_up_table">Table 5</a>.</p>
 <p><center>
-<a name="#tab:look_up_table"></a></p>
+<a name="tab:look_up_table"></a></p>
 <table>
 <thead>
 <tr>
@@ -2126,7 +2126,7 @@ <h4 id="aggregation-of-the-raw-land-use-data-to-the-target-field">Aggregation of
 value for all the target fields listed in
 <a href="#tab:target_fields_lu">Table 6</a>.</p>
 <p><center>
-<a name="#tab:target_fields_lu"></a></p>
+<a name="tab:target_fields_lu"></a></p>
 <table>
 <thead>
 <tr>
@@ -2525,7 +2525,7 @@ <h4 id="aggregation-of-the-fao-and-hwsd-data-with-terra-mapping-to-the-target-gr
 defined. If the target grid point is outside the raw data grid the slope
 is defined as zero and the texture as undefined.</p>
 <p><center>
-<a name="#tab:soil_types_FAO"></a></p>
+<a name="tab:soil_types_FAO"></a></p>
 <table>
 <thead>
 <tr>