Merge pull request #179 from BrainLesion/173

added tempfile
BrainLesion · Jan 31, 2025 · 8294541 · 8294541
2 parents f44db2b + b3182c3
commit 8294541
Showing 1 changed file with 10 additions and 10 deletions.
diff --git a/panoptica/panoptica_aggregator.py b/panoptica/panoptica_aggregator.py
@@ -8,6 +8,7 @@
 import os
 import atexit
 import warnings
+import tempfile
 
 # Set start method based on the operating system
 try:
@@ -83,12 +84,15 @@ def __init__(
         else:
             out_file_path += ".tsv"  # add extension
 
-        out_buffer_file: Path = Path(out_file_path).parent.joinpath(
-            "panoptica_aggregator_tmp.tsv"
-        )
-        self.__output_buffer_file = out_buffer_file
+        # buffer_file = tempfile.NamedTemporaryFile()
+        # out_buffer_file: Path = Path(out_file_path).parent.joinpath("panoptica_aggregator_tmp.tsv")
+        # self.tmpfile =
+        self.__output_buffer_file = tempfile.NamedTemporaryFile(
+            delete=False
+        ).name  # out_buffer_file
+        # print(self.__output_buffer_file)
 
-        Path(out_file_path).parent.mkdir(parents=True, exist_ok=True)
+        Path(out_file_path).parent.mkdir(parents=False, exist_ok=True)
         self.__output_file = out_file_path
 
         header = ["subject_name"] + [
@@ -113,10 +117,6 @@ def __init__(
                     "+".join(header_list)
                 ), "Hash of header not the same! You are using a different setup!"
 
-        if out_buffer_file.exists():
-            os.remove(out_buffer_file)
-        open(out_buffer_file, "a").close()
-
         if continue_file:
             with inevalfilelock:
                 with filelock:
@@ -127,7 +127,7 @@ def __init__(
 
     def __exist_handler(self):
         """Handles cleanup upon program exit by removing the temporary output buffer file."""
-        if self.__output_buffer_file is not None and self.__output_buffer_file.exists():
+        if Path(self.__output_buffer_file).exists():
             os.remove(str(self.__output_buffer_file))
 
     def make_statistic(self) -> Panoptica_Statistic: