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Readme update link to proteoformer
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sfverbru committed Jul 12, 2017
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Main script is mQC.pl and you can run it as in following example:
perl ./mQC.pl --experiment_name yourexperimentname --samfile yoursamfile.sam --cores 20 --species human --ens_v 86 --ens_db ENS_hsa_86.db --unique N --offset plastid --plastid_bam yourbamfile.bam --tool_dir mqc_tools

A Galaxy version of mQC is also available. MappingQC is also built in in the PROTEOFORMER pipeline, an automated pipeline for analysis of ribosome profiling sequencing data.
A Galaxy version of mQC is also available.

MappingQC is also built in in the PROTEOFORMER pipeline, an automated pipeline for analysis of ribosome profiling sequencing data: https://github.com/Biobix/proteoformer

## Input parameters

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