Courtney Larson Dissertation

BenbowLab · Aug 9, 2020 · f2d0b6a · f2d0b6a
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diff --git a/AJF_RF.pdf b/AJF_RF.pdf
diff --git a/ALLCha_RF.pdf b/ALLCha_RF.pdf
diff --git a/ALLFPD_RF.pdf b/ALLFPD_RF.pdf
diff --git a/ALLInputCors.csv b/ALLInputCors.csv
diff --git a/ALLMic_GapL_NMDS.tiff b/ALLMic_GapL_NMDS.tiff
diff --git a/ALLORA_YGFWT.pdf b/ALLORA_YGFWT.pdf
diff --git a/ALLR_RF.pdf b/ALLR_RF.pdf
diff --git a/ALLRich_RF.pdf b/ALLRich_RF.pdf
diff --git a/ALL_CWD.pdf b/ALL_CWD.pdf
diff --git a/ALL_GA.pdf b/ALL_GA.pdf
diff --git a/ALL_GAGL.pdf b/ALL_GAGL.pdf
diff --git a/ALL_GALAT.pdf b/ALL_GALAT.pdf
diff --git a/ALL_Rich.pdf b/ALL_Rich.pdf
diff --git a/ALL_abund.csv b/ALL_abund.csv
diff --git a/ALLfpd_GAWT.pdf b/ALLfpd_GAWT.pdf
diff --git a/ALLpA_RF.pdf b/ALLpA_RF.pdf
diff --git a/ALLpAsh_RF.pdf b/ALLpAsh_RF.pdf
diff --git a/ALLpAspen_RF.pdf b/ALLpAspen_RF.pdf
diff --git a/ALLpB_RF.pdf b/ALLpB_RF.pdf
diff --git a/ALLpE_RF.pdf b/ALLpE_RF.pdf
diff --git a/ALLpE_YGF.pdf b/ALLpE_YGF.pdf
diff --git a/ALLpH_RF.pdf b/ALLpH_RF.pdf
diff --git a/ALLpM_RF.pdf b/ALLpM_RF.pdf
diff --git a/ALLpO_GAWT.pdf b/ALLpO_GAWT.pdf
diff --git a/ALLpO_RF.pdf b/ALLpO_RF.pdf
diff --git a/ALWD_RF.pdf b/ALWD_RF.pdf
diff --git a/ALWVpA_RF.pdf b/ALWVpA_RF.pdf
diff --git a/ANOVA_AshPiecesRA_Watershed.pdf b/ANOVA_AshPiecesRA_Watershed.pdf
diff --git a/ATFPD_RF.pdf b/ATFPD_RF.pdf
diff --git a/AllVariables.csv b/AllVariables.csv
diff --git a/Allloadings.csv b/Allloadings.csv
@@ -0,0 +1,21 @@
+"","ALL_Richness","ALL_prop_Ash_bi","ALL_prop_Aspen_bi","ALL_prop_Basswood_bi","ALL_prop_Beech_bi","ALL_prop_Birch_bi","ALL_prop_Cherry_bi","ALL_prop_Walnut_bi","ALL_prop_Buckthorn_bi","ALL_prop_Dogwood_bi","ALL_prop_Elm_bi","ALL_prop_Grass_bi","ALL_prop_Maple_bi","ALL_prop_Oak","ALL_prop_Poplar_bi","ALL.Dim.1","ALL.Dim.2","ALL.Dim.3","ALL.Dim.4","ALL.Dim.5"
+"ALL_Richness",1,0.232652278331814,0.620880775596329,0.455665265568637,0.575967918437756,0.454124556548622,0.337123485919596,0.821776111019941,0.412790609619131,0.636330737037901,0.631683932539084,-0.192460701966691,0.497658906659856,0.017611664314544,0.496726260159562,0.899150768374374,0.174509449868472,0.137962624723433,-0.0770768806192745,0.194179076717053
+"ALL_prop_Ash_bi",0.232652278331814,1,0.302753050383217,0.281270493582643,-0.211130844238985,0.281270493582643,-0.18102436800565,-0.967029736536063,-0.831174544218894,-0.967029736536063,-0.962547733032968,-0.870341319280248,-0.054544604289086,-0.190451624966063,-0.831174544218894,-0.0344116575907582,0.401703308290214,-0.771745261745505,-0.383940727802018,0.543585337467422
+"ALL_prop_Aspen_bi",0.620880775596329,0.302753050383217,1,0.474197248034482,-0.0446208514690226,0.474197248034482,-0.900585897287709,0.664142885012095,-0.97087888405234,-0.772222283885892,0.31164173521979,-0.837799753887657,-0.382820043885349,-0.119466525918935,-0.97087888405234,0.553178984574678,0.295016576376053,-0.921665676288137,0.382191799322748,0.796784012333989
+"ALL_prop_Basswood_bi",0.455665265568637,0.281270493582643,0.474197248034482,1,-0.989215773548852,0.268065887412097,0.44917728815717,-0.81873856064157,-0.849292272205622,0.410341519429574,0.2371182755328,-0.904114231123438,-0.236334238277559,-0.366256584689443,0.235638506101622,0.288193998696815,NA,-0.187352109638985,-0.224021903914331,0.217723145971783
+"ALL_prop_Beech_bi",0.575967918437756,-0.211130844238985,-0.0446208514690226,-0.989215773548852,1,0.0454012611828429,-0.343571557697896,0.979648579616346,0.0792244631614065,0.270014657441262,0.285351844666667,0.0144626410233257,0.54018381547003,0.489004684725075,0.0792244631614065,0.651479195694692,-0.783779162638149,0.182716698838658,-0.110835921505715,-0.0226370227957469
+"ALL_prop_Birch_bi",0.454124556548622,0.281270493582643,0.474197248034482,0.268065887412097,0.0454012611828429,1,-0.38629972025875,-0.81873856064157,0.235638506101622,0.410341519429574,0.0454012611828429,-0.904114231123438,-0.0644637922652543,-0.298014180793908,-0.849292272205622,0.403028551190392,0.453763751776909,-0.647514415413914,0.156585507858652,-0.332407776659794
+"ALL_prop_Cherry_bi",0.337123485919596,-0.18102436800565,-0.900585897287709,0.44917728815717,-0.343571557697896,-0.38629972025875,1,-0.855131180348366,0.107554773611829,0.295596282088613,0.0188773680816037,0.290024717597787,0.213693633084488,-0.540206849619738,0.508855328336696,0.0272401825738961,0.637474333379661,0.837093372742452,-0.409595985310016,0.265882210570544
+"ALL_prop_Walnut_bi",0.821776111019941,-0.967029736536063,0.664142885012095,-0.81873856064157,0.979648579616346,-0.81873856064157,-0.855131180348366,1,-0.751237570376479,-0.702881900501282,0.979648579616346,-0.816844307356371,0.920921206273965,0.426682150226271,-0.751237570376479,0.852847328326759,-0.90887179952798,-0.261630602027399,0.0515867395391225,0.754016789466003
+"ALL_prop_Buckthorn_bi",0.412790609619131,-0.831174544218894,-0.97087888405234,-0.849292272205622,0.0792244631614065,0.235638506101622,0.107554773611829,-0.751237570376479,1,-0.751237570376479,0.483499850461273,-0.814431716401873,-0.253587646793594,-0.0392114699554479,0.616240401280932,0.339354949368824,0.185738186571238,0.564218279183764,0.999900050007998,-0.300820904411095
+"ALL_prop_Dogwood_bi",0.636330737037901,-0.967029736536063,-0.772222283885892,0.410341519429574,0.270014657441262,0.410341519429574,0.295596282088613,-0.702881900501282,-0.751237570376479,1,0.979648579616346,-0.816844307356371,-0.042545891834553,-0.601641772310217,-0.751237570376479,0.596735045192114,0.663563968405545,0.222001831507992,-0.65585973998586,-0.999900000106581
+"ALL_prop_Elm_bi",0.631683932539084,-0.962547733032968,0.31164173521979,0.2371182755328,0.285351844666667,0.0454012611828429,0.0188773680816037,0.979648579616346,0.483499850461273,0.979648579616346,1,-0.97180386203489,0.131539398839994,0.0296151364114098,0.0792244631614065,0.825803332132759,0.0668636051119707,0.191009639074088,0.218712985824376,-0.345057327454497
+"ALL_prop_Grass_bi",-0.192460701966691,-0.870341319280248,-0.837799753887657,-0.904114231123438,0.0144626410233257,-0.904114231123438,0.290024717597787,-0.816844307356371,-0.814431716401873,-0.816844307356371,-0.97180386203489,1,-0.166388819090617,0.102438522469169,0.357906521324761,-0.697762617629533,-0.282739731622276,0.572157836725088,-0.0888842106770166,0.58965770774768
+"ALL_prop_Maple_bi",0.497658906659856,-0.054544604289086,-0.382820043885349,-0.236334238277559,0.54018381547003,-0.0644637922652543,0.213693633084488,0.920921206273965,-0.253587646793594,-0.042545891834553,0.131539398839994,-0.166388819090617,1,0.113380204773297,-0.253587646793594,0.502597153614845,-0.383330250741014,0.262403858232251,-0.767858265996059,0.0358938883990436
+"ALL_prop_Oak",0.017611664314544,-0.190451624966063,-0.119466525918935,-0.366256584689443,0.489004684725075,-0.298014180793908,-0.540206849619738,0.426682150226271,-0.0392114699554479,-0.601641772310217,0.0296151364114098,0.102438522469169,0.113380204773297,1,-0.4108484688143,0.0977351260103368,-0.724717075165411,-0.0908268297294408,0.103257763108991,0.0394693207019427
+"ALL_prop_Poplar_bi",0.496726260159562,-0.831174544218894,-0.97087888405234,0.235638506101622,0.0792244631614065,-0.849292272205622,0.508855328336696,-0.751237570376479,0.616240401280932,-0.751237570376479,0.0792244631614065,0.357906521324761,-0.253587646793594,-0.4108484688143,1,0.162993187331861,0.501618251178289,NA,0.568943513295309,0.664486255531534
+"ALL.Dim.1",0.899150768374374,-0.0344116575907582,0.553178984574678,0.288193998696815,0.651479195694692,0.403028551190392,0.0272401825738961,0.852847328326759,0.339354949368824,0.596735045192114,0.825803332132759,-0.697762617629533,0.502597153614845,0.0977351260103368,0.162993187331861,1,-3.59890795063259e-16,-9.26205861329751e-17,2.18292888262416e-16,9.26991631758134e-17
+"ALL.Dim.2",0.174509449868472,0.401703308290214,0.295016576376053,NA,-0.783779162638149,0.453763751776909,0.637474333379661,-0.90887179952798,0.185738186571238,0.663563968405545,0.0668636051119707,-0.282739731622276,-0.383330250741014,-0.724717075165411,0.501618251178289,-3.59890795063259e-16,1,-9.18103020947352e-16,-3.47895655313726e-17,2.30737512060322e-16
+"ALL.Dim.3",0.137962624723433,-0.771745261745505,-0.921665676288137,-0.187352109638985,0.182716698838658,-0.647514415413914,0.837093372742452,-0.261630602027399,0.564218279183764,0.222001831507992,0.191009639074088,0.572157836725088,0.262403858232251,-0.0908268297294408,NA,-9.26205861329751e-17,-9.18103020947352e-16,1,-5.44164110874745e-17,-3.3565016154962e-16
+"ALL.Dim.4",-0.0770768806192745,-0.383940727802018,0.382191799322748,-0.224021903914331,-0.110835921505715,0.156585507858652,-0.409595985310016,0.0515867395391225,0.999900050007998,-0.65585973998586,0.218712985824376,-0.0888842106770166,-0.767858265996059,0.103257763108991,0.568943513295309,2.18292888262416e-16,-3.47895655313726e-17,-5.44164110874745e-17,1,2.84738254598774e-16
+"ALL.Dim.5",0.194179076717053,0.543585337467422,0.796784012333989,0.217723145971783,-0.0226370227957469,-0.332407776659794,0.265882210570544,0.754016789466003,-0.300820904411095,-0.999900000106581,-0.345057327454497,0.58965770774768,0.0358938883990436,0.0394693207019427,0.664486255531534,9.26991631758134e-17,2.30737512060322e-16,-3.3565016154962e-16,2.84738254598774e-16,1
diff --git a/AqCWD_LA_TCWD.pdf b/AqCWD_LA_TCWD.pdf
diff --git a/Aqhloadings.csv b/Aqhloadings.csv
@@ -0,0 +1,13 @@
+"","Aquatic_Transect_width","Bend","log10Aquatic_InSitFreq_nz","Aquatic_LJFreq_bi","Aquatic_LWDens","Aquatic_LWvolpa","log10Aquatic_pervolinjam_nz","AH.Dim.1","AH.Dim.2","AH.Dim.3","AH.Dim.4","AH.Dim.5"
+"Aquatic_Transect_width",1,-0.251327168120945,-0.263310629720427,0.278800676240031,-0.499028757109473,-0.0230375719629852,0.275619509670147,-0.558033292345712,0.0138716539101088,0.548551996363504,0.565091742701747,0.162792788774663
+"Bend",-0.251327168120945,1,-0.0220775587029248,-0.0141823714058085,0.604455262103355,0.585250403589088,-0.383107898114549,0.718932791559208,0.27942056236646,0.471548560655099,-0.318605221766813,0.389290920596685
+"log10Aquatic_InSitFreq_nz",-0.263310629720427,-0.0220775587029248,1,-0.104314502079518,0.448496610647031,0.148519171738386,-0.195389764824817,0.440043941042326,0.108525510805563,-0.636427516927099,0.556642502419115,0.221776441657281
+"Aquatic_LJFreq_bi",0.278800676240031,-0.0141823714058085,-0.104314502079518,1,0.286544648696442,-0.0378245868341359,0.812640200381949,-0.362488645112418,0.922437061836688,0.0871287652312625,0.0522102814537016,-0.0938611244353768
+"Aquatic_LWDens",-0.499028757109473,0.604455262103355,0.448496610647031,0.286544648696442,1,0.526340684471673,-0.197497670820324,0.741417871485862,0.59262180158661,-0.146151337187404,-0.0382699341025771,-0.062344488359096
+"Aquatic_LWvolpa",-0.0230375719629852,0.585250403589088,0.148519171738386,-0.0378245868341359,0.526340684471673,1,-0.53095204780687,0.722858778175212,0.157135402710732,0.496376682262455,0.301159375508009,-0.258287558493094
+"log10Aquatic_pervolinjam_nz",0.275619509670147,-0.383107898114549,-0.195389764824817,0.812640200381949,-0.197497670820324,-0.53095204780687,1,-0.748645113563851,0.624375132432865,-0.147193121780628,-0.0894141076659401,0.0341379483590939
+"AH.Dim.1",-0.558033292345712,0.718932791559208,0.440043941042326,-0.362488645112418,0.741417871485862,0.722858778175212,-0.748645113563851,1,-0.00578288546146922,0.0208072828125522,-0.0170986641125962,0.0300693006698465
+"AH.Dim.2",0.0138716539101088,0.27942056236646,0.108525510805563,0.922437061836688,0.59262180158661,0.157135402710732,0.624375132432865,-0.00578288546146922,1,0.0189533992359619,-0.0114470578508966,0.0142253486462907
+"AH.Dim.3",0.548551996363504,0.471548560655099,-0.636427516927099,0.0871287652312625,-0.146151337187404,0.496376682262455,-0.147193121780628,0.0208072828125522,0.0189533992359619,1,-0.0245273915258679,0.0417825080672647
+"AH.Dim.4",0.565091742701747,-0.318605221766813,0.556642502419115,0.0522102814537016,-0.0382699341025771,0.301159375508009,-0.0894141076659401,-0.0170986641125962,-0.0114470578508966,-0.0245273915258679,1,-0.0326543481686542
+"AH.Dim.5",0.162792788774663,0.389290920596685,0.221776441657281,-0.0938611244353768,-0.062344488359096,-0.258287558493094,0.0341379483590939,0.0300693006698465,0.0142253486462907,0.0417825080672647,-0.0326543481686542,1
diff --git a/AquaticLitterGapForest.png b/AquaticLitterGapForest.png