BUG: Fix bug with logger call

.coveragerc

@@ -0,0 +1,12 @@
+[run]
+branch = True
+source = snirf
+omit =
+    */setup.py
+
+[report]
+exclude_lines =
+    pragma: no cover
+    if __name__ == .__main__.:
+    @abstractmethod
+    @abstractclassmethod

.github/workflows/test.yml

@@ -1,4 +1,7 @@
 name: test
+concurrency:
+  group: ${{ github.workflow }}-${{ github.event.number }}-${{ github.event.ref }}
+  cancel-in-progress: true
 on:
   push:
     branches:
@@ -10,18 +13,24 @@ on:
 jobs:
   build-linux:
     runs-on: ubuntu-latest
+    continue-on-error: true
     strategy:
       max-parallel: 5
-
+      matrix:
+        python-version: ['3.8', '3.9', '3.10', '3.11']
+    defaults:
+      run:
+        shell: bash -el {0}
     steps:
-      - uses: actions/checkout@v2
-      - name: Install Python 3
-        uses: actions/setup-python@v1
+      - uses: actions/checkout@v3
+      - uses: actions/setup-python@v4
         with:
-          python-version: 3.8.17
+          python-version: ${{ matrix.python-version }}
       - name: Install dependencies
         run: |
-          python -m pip install --upgrade pip
-          pip install -r requirements.txt
-      - name: Run test.py
-        run: python -m unittest discover -s ./tests
+          python -m pip install --upgrade pip setuptools wheel
+          pip install -r requirements.txt pytest pytest-cov
+          pip install --no-build-isolation -ve .
+      - run: pytest tests/test.py
+      - uses: codecov/codecov-action@v3
+        if: success()

.gitignore

@@ -1,4 +1,7 @@
 **/venv
 **/__pycache__
 .idea
-*.log
+*.log
+*.egg-info
+junit-results.xml
+tests/wd

pyproject.toml

@@ -3,4 +3,10 @@ requires = [
     "setuptools>=42",
     "wheel"
 ]
-build-backend = "setuptools.build_meta"
+build-backend = "setuptools.build_meta"
+
+[tool.pytest.ini_options]
+addopts = """-ra --cov-report= --tb=short \
+    --junit-xml=junit-results.xml \
+    --color=yes --capture=sys"""
+junit_family = "xunit2"

requirements.txt

@@ -1,6 +1,6 @@
-h5py==3.1.0
-numpy==1.19.5
-setuptools==40.8.0
-pip==21.3.1
-termcolor==1.1.0
-colorama==0.4.4
+h5py
+numpy
+setuptools
+pip
+termcolor
+colorama

setup.py

@@ -6,12 +6,16 @@
 
 import io
 import os
+from pathlib import Path
 import sys
 from shutil import rmtree
 
 from setuptools import find_packages, setup, Command
 
-from snirf.__version__ import __version__ as VERSION
+# Do not "import snirf" here because that requires h5py to be installed
+with open(Path(__file__).parent / "snirf" / "__version__.py") as f:
+    VERSION = f.readline().split("=")[1].strip().strip('()')
+VERSION = ".".join(VERSION.replace(' ', '').replace(',', '.').split(','))
 
 NAME = 'snirf'
 

snirf/pysnirf2.py

@@ -1278,7 +1278,7 @@ def _order_names(self, h=None):
                 h.move(e.location,
                        '/'.join(e.location.split('/')[:-1]) + '/' + self._name)
                 self._cfg.logger.info(
-                    e.location, '--->',
+                    e.location + '--->' +
                     '/'.join(e.location.split('/')[:-1]) + '/' + self._name)
         elif all([
                 len(e.location.split('/' + self._name)[-1]) > 0