New release 3.0.0 - 2025/01/02

• Code refactor to create a proper python package
• Implementation of parallel computation for execution speed.
• New implementation of reference-alleles module using leiden algorithm for allele clustering.
• New param defaults based on empirical testing.
• Distance matrix is rewritten with more params available.

What's Changed

• Merge tag '2.0.1' into develop by @saramonzon in #10
• Refactorization of Analyze schema by @luissian in #11
• Implemented changes described in comments in the previous PR by @luissian in #13
• Feature/reference alleles by @luissian in #14
• Fixing issue for reference allele by @luissian in #15
• fixed issue too many open files by @luissian in #16
• Enhancements reference alleles processes by @saramonzon in #18
• Feature/allele calling by @luissian in #17
• Implemented distance matrix by @luissian in #20
• Fixes in allele calling module by @saramonzon in #21
• Fixes and enhancements by @saramonzon in #22
• Release 3.0.0 by @saramonzon in #23

New Contributors

• @luissian made their first contribution in #11

Full Changelog: 2.0.1...3.0.0