Reorganize the project

BMDSoftware · Jul 6, 2021 · 33c20db · 33c20db
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Showing 38 changed files with 3 additions and 1,506 deletions.
diff --git a/.DS_Store b/.DS_Store
diff --git a/UsagiConceptMapping/Usagi_v1.2.7.jar b/UsagiConceptMapping/Usagi_v1.2.7.jar
diff --git a/bin/.DS_Store b/bin/.DS_Store
diff --git a/UsagiBDMapping/Usagi_v1.2.7.jar → bin/Usagi_v1.2.7.jar b/UsagiBDMapping/Usagi_v1.2.7.jar → bin/Usagi_v1.2.7.jar
diff --git a/bin/WhiteRabbit/.DS_Store b/bin/WhiteRabbit/.DS_Store
diff --git a/WhiteRabbit/WhiteRabbit.jar → bin/WhiteRabbit/WhiteRabbit.jar b/WhiteRabbit/WhiteRabbit.jar → bin/WhiteRabbit/WhiteRabbit.jar
diff --git a/...eRabbit_lib/RedshiftJDBC4-1.1.10.1010.jar → ...eRabbit_lib/RedshiftJDBC4-1.1.10.1010.jar b/...eRabbit_lib/RedshiftJDBC4-1.1.10.1010.jar → ...eRabbit_lib/RedshiftJDBC4-1.1.10.1010.jar
diff --git a/...abbit/WhiteRabbit_lib/commons-csv-1.1.jar → ...abbit/WhiteRabbit_lib/commons-csv-1.1.jar b/...abbit/WhiteRabbit_lib/commons-csv-1.1.jar → ...abbit/WhiteRabbit_lib/commons-csv-1.1.jar
diff --git a/...bbit/WhiteRabbit_lib/commons-lang-2.0.jar → ...bbit/WhiteRabbit_lib/commons-lang-2.0.jar b/...bbit/WhiteRabbit_lib/commons-lang-2.0.jar → ...bbit/WhiteRabbit_lib/commons-lang-2.0.jar
diff --git a/...t/WhiteRabbit_lib/commons-logging-1.2.jar → ...t/WhiteRabbit_lib/commons-logging-1.2.jar b/...t/WhiteRabbit_lib/commons-logging-1.2.jar → ...t/WhiteRabbit_lib/commons-logging-1.2.jar
diff --git a/WhiteRabbit/WhiteRabbit_lib/dom4j-1.6.1.jar → ...iteRabbit/WhiteRabbit_lib/dom4j-1.6.1.jar b/WhiteRabbit/WhiteRabbit_lib/dom4j-1.6.1.jar → ...iteRabbit/WhiteRabbit_lib/dom4j-1.6.1.jar
diff --git a/WhiteRabbit/WhiteRabbit_lib/hsqldb-2.2.5.jar → ...teRabbit/WhiteRabbit_lib/hsqldb-2.2.5.jar b/WhiteRabbit/WhiteRabbit_lib/hsqldb-2.2.5.jar → ...teRabbit/WhiteRabbit_lib/hsqldb-2.2.5.jar
diff --git a/...Rabbit/WhiteRabbit_lib/jackcess-2.1.3.jar → ...Rabbit/WhiteRabbit_lib/jackcess-2.1.3.jar b/...Rabbit/WhiteRabbit_lib/jackcess-2.1.3.jar → ...Rabbit/WhiteRabbit_lib/jackcess-2.1.3.jar
diff --git a/...eRabbit/WhiteRabbit_lib/json-io-3.0.1.jar → ...eRabbit/WhiteRabbit_lib/json-io-3.0.1.jar b/...eRabbit/WhiteRabbit_lib/json-io-3.0.1.jar → ...eRabbit/WhiteRabbit_lib/json-io-3.0.1.jar
diff --git a/...t_lib/mysql-connector-java-5.1.37-bin.jar → ...t_lib/mysql-connector-java-5.1.37-bin.jar b/...t_lib/mysql-connector-java-5.1.37-bin.jar → ...t_lib/mysql-connector-java-5.1.37-bin.jar
diff --git a/WhiteRabbit/WhiteRabbit_lib/ojdbc14.jar → bin/WhiteRabbit/WhiteRabbit_lib/ojdbc14.jar b/WhiteRabbit/WhiteRabbit_lib/ojdbc14.jar → bin/WhiteRabbit/WhiteRabbit_lib/ojdbc14.jar
diff --git a/...bbit/WhiteRabbit_lib/poi-3.9-20121203.jar → ...bbit/WhiteRabbit_lib/poi-3.9-20121203.jar b/...bbit/WhiteRabbit_lib/poi-3.9-20121203.jar → ...bbit/WhiteRabbit_lib/poi-3.9-20121203.jar
diff --git a/...eRabbit_lib/poi-excelant-3.9-20121203.jar → ...eRabbit_lib/poi-excelant-3.9-20121203.jar b/...eRabbit_lib/poi-excelant-3.9-20121203.jar → ...eRabbit_lib/poi-excelant-3.9-20121203.jar
diff --git a/...hiteRabbit_lib/poi-ooxml-3.9-20121203.jar → ...hiteRabbit_lib/poi-ooxml-3.9-20121203.jar b/...hiteRabbit_lib/poi-ooxml-3.9-20121203.jar → ...hiteRabbit_lib/poi-ooxml-3.9-20121203.jar
diff --git a/...it_lib/poi-ooxml-schemas-3.9-20121203.jar → ...it_lib/poi-ooxml-schemas-3.9-20121203.jar b/...it_lib/poi-ooxml-schemas-3.9-20121203.jar → ...it_lib/poi-ooxml-schemas-3.9-20121203.jar
diff --git a/...eRabbit_lib/postgresql-9.4-1201.jdbc4.jar → ...eRabbit_lib/postgresql-9.4-1201.jdbc4.jar b/...eRabbit_lib/postgresql-9.4-1201.jdbc4.jar → ...eRabbit_lib/postgresql-9.4-1201.jdbc4.jar
diff --git a/...Rabbit_lib/postgresql-9.4-1201.jdbc41.jar → ...Rabbit_lib/postgresql-9.4-1201.jdbc41.jar b/...Rabbit_lib/postgresql-9.4-1201.jdbc41.jar → ...Rabbit_lib/postgresql-9.4-1201.jdbc41.jar
diff --git a/WhiteRabbit/WhiteRabbit_lib/sqljdbc4.jar → bin/WhiteRabbit/WhiteRabbit_lib/sqljdbc4.jar b/WhiteRabbit/WhiteRabbit_lib/sqljdbc4.jar → bin/WhiteRabbit/WhiteRabbit_lib/sqljdbc4.jar
diff --git a/...Rabbit/WhiteRabbit_lib/stax-api-1.0.1.jar → ...Rabbit/WhiteRabbit_lib/stax-api-1.0.1.jar b/...Rabbit/WhiteRabbit_lib/stax-api-1.0.1.jar → ...Rabbit/WhiteRabbit_lib/stax-api-1.0.1.jar
diff --git a/WhiteRabbit/WhiteRabbit_lib/tdgssconfig.jar → ...iteRabbit/WhiteRabbit_lib/tdgssconfig.jar b/WhiteRabbit/WhiteRabbit_lib/tdgssconfig.jar → ...iteRabbit/WhiteRabbit_lib/tdgssconfig.jar
diff --git a/WhiteRabbit/WhiteRabbit_lib/terajdbc4.jar → ...WhiteRabbit/WhiteRabbit_lib/terajdbc4.jar b/WhiteRabbit/WhiteRabbit_lib/terajdbc4.jar → ...WhiteRabbit/WhiteRabbit_lib/terajdbc4.jar
diff --git a/...it/WhiteRabbit_lib/ucanaccess-3.0.3.1.jar → ...it/WhiteRabbit_lib/ucanaccess-3.0.3.1.jar b/...it/WhiteRabbit_lib/ucanaccess-3.0.3.1.jar → ...it/WhiteRabbit_lib/ucanaccess-3.0.3.1.jar
diff --git a/...Rabbit/WhiteRabbit_lib/xmlbeans-2.3.0.jar → ...Rabbit/WhiteRabbit_lib/xmlbeans-2.3.0.jar b/...Rabbit/WhiteRabbit_lib/xmlbeans-2.3.0.jar → ...Rabbit/WhiteRabbit_lib/xmlbeans-2.3.0.jar
diff --git a/material/.DS_Store b/material/.DS_Store
diff --git a/material/Maastricht/.DS_Store b/material/Maastricht/.DS_Store
diff --git a/material/Maastricht/7_Results/.DS_Store b/material/Maastricht/7_Results/.DS_Store
diff --git a/material/README.md b/material/README.md
@@ -0,0 +1,3 @@
+## Material
+
+This directory is reserved to store the cohort raw data and all the information that is generated during the migration procedure. The raw data of each cohort is not available here, but it should be placed at the 0_CSVs directory in the respective cohort.
diff --git a/material/syntheticBerlin/0_CSVs/Blood and CSF.csv b/material/syntheticBerlin/0_CSVs/Blood and CSF.csv
diff --git a/material/syntheticBerlin/0_CSVs/Diagnosis.csv b/material/syntheticBerlin/0_CSVs/Diagnosis.csv
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		@@ -0,0 +1,3 @@
		## Material

		This directory is reserved to store the cohort raw data and all the information that is generated during the migration procedure. The raw data of each cohort is not available here, but it should be placed at the 0_CSVs directory in the respective cohort.