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@rfm-targa rfm-targa released this 17 Mar 01:42
· 749 commits to master since this release
v2.7.0
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New implementation of the CreateSchema process. This new implementation significantly reduces execution time. It is designed to enable schema creation based on hundreds or thousands of assemblies on a laptop. The schemas generated by the new implementation are fully compatible with previous versions.

Additional changes

  • Improved detection of invalid inputs (inputs that do not contain coding sequences (CDSs), that contain invalid sequences/characters, empty files, etc).
  • New parameter --pm allows users to set Prodigal's execution mode. The single mode is the default mode. Use the meta mode for input files that have less than 100kbp (e.g.: plasmids, viruses).
  • CreateSchema accepts a single or several FASTA files with CDSs if the --CDS option is included in the command. This option skips the gene prediction step with Prodigal and creates a schema seed based on the CDSs in the input files.
  • AlleleCall can automatically detect parameter values previously used with a schema. Users only need to provide values for the -i, -g and -o parameters.
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