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c9aab34 · Dec 16, 2023

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Composition

The names of the loci are hereby reported, alongside with the species they where taken from (to simulate at best an unknown species from Coleoptera, we mixed 2 genes from 2 different taxa that belong to the order) and with their length in bp. All the reference sequences are stored in reference.fasta and were taken, without further modification, from NCBI-Nucleotide.

GENE SPECIES LENGTH(bp)
28S-rRNA Scepticus uniformis 660
S7 Glaresis ecostata 875

Generate data

To generate data in Linux, run:

simON_reads.py -i reference.fasta -snp "28S-rRNA:3:G>T,28S-rRNA:41:C>G,S7:0:A>G,S7:63:C>T" -n 1000 > test.fastq

If you are in Windows:

python3 .\simON_reads.py -i .\reference.fasta -snp "28S-rRNA:3:G>T,28S-rRNA:41:C>G,S7:0:A>G,S7:63:C>T" -n 1000 > .\test.fastq

Always remember to redirect the stream to your desidered file, unless you want it to be printed on the standard output of your terminal.