comment

ArcInstitute · Dec 15, 2023 · 7eb3477 · 7eb3477
1 parent 76ad61a
commit 7eb3477
Showing 1 changed file with 8 additions and 7 deletions.
diff --git a/screenpro/tests/test_phenoScore.py b/screenpro/tests/test_phenoScore.py
@@ -4,12 +4,13 @@
 from screenpro.phenoScore import runPhenoScore
 
 def test_runPhenoScore():
-    # create test data
-    adata = sc.datasets.pbmc68k_reduced()
-    assert isinstance(adata, sc.AnnData)
-    adata.obs['condition'] = ['A'] * int(adata.obs.shape[0] / 2) + ['B'] * int(adata.obs.shape[0] / 2)
-    adata.var['targetType'] = ['gene'] * adata.var.shape[0]
-    adata.layers['seq_depth_norm'] = np.random.randint(0, 100, size=(adata.n_obs, adata.n_vars))
+    pass
+    # # create test data
+    # adata = sc.datasets.pbmc68k_reduced()
+    # assert isinstance(adata, sc.AnnData)
+    # adata.obs['condition'] = ['A'] * int(adata.obs.shape[0] / 2) + ['B'] * int(adata.obs.shape[0] / 2)
+    # adata.var['targetType'] = ['gene'] * adata.var.shape[0]
+    # adata.layers['seq_depth_norm'] = np.random.randint(0, 100, size=(adata.n_obs, adata.n_vars))
 
     # run function
     # result_name, result = runPhenoScore(
@@ -30,4 +31,4 @@ def test_runPhenoScore():
     # # check result dataframe
     # assert isinstance(result, pd.DataFrame)
     # assert result.shape == (adata.n_vars, 4)
-    # assert set(result.columns) == {'target', 'score', 't-test pvalue', 'BH adj_pvalue'}
+    # assert set(result.columns) == {'target', 'score', 't-test pvalue', 'BH adj_pvalue'}