initial setup

README.md

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+## UZH BIO390 - Introduction to Bioinformatics Lecture Series
+
+Please see the [website](https://compbiozurich.org/UZH-BIO390/) for more information or dig through the repository here.

_config.yml

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+label: 'UZH BIO390'
+tagline: 'Introduction to Bioinformatics'
+description: |
+  This is the repository for the University of Zurich's "Introduction to 
+  Bioinformatics" lecture series.
+keywords: UZH, life sciences, baudisgroup. bioinformatics
+site_domain_name: http://compbiozurich.org
+url: 'https://compbiozurich.org'
+
+# The baseurl parameter is an empty string if the site is represented at the root
+# of a domain. For project domains on Github it corresponds to the project name.
+baseurl: "/UZH-BIO390"
+
+# the site_parent_link parameter is used e.g. for icon links.
+site_parent_link: 'https://compbiozurich.org'
+github_organisation: compbiozurich
+
+# instructions for processing specific directories
+include:        # usually only pages in / and /_posts are "seen" => processed
+  - categories  # contains landing pages for each category
+  - tags        # contains landing pages for each tag
+
+# Collections are used to organise pages into logical groups; these do not need
+# to have a relation to the "categories", though this is highly recommended
+# Collection directories reside in "/collections_dir/_(collection name)".
+# The "_posts" collection is created by default.
+collections:
+  doc:
+    output: true
+    permalink: /doc/:path/
+  people:
+    output: true
+    permalink: /people/:path/
+  howto:
+    output: true
+    permalink: /howto/:path/
+  days:
+    output: true
+    permalink: /days/:path/
+collections_dir: pages  # optional; here, all collections are inside "/pages"
+
+# navigation blocks can be used to separate different categories and add e.g.
+# external link block(s), in combination with a properly modified layout
+nav_cat_blocks:     # comma-separated "label,type,label_visibility"
+  general: 'General,categories,hide'
+  related_sites: 'Related Sites,related_sites,show'
+  github_projects: 'Github Projects,github_projects,show'
+
+# content of the different navigation blocks
+general:
+  doc: 'General Info'
+  days: 'Lectures'
+  people: Teachers
+  howto: 'Examples, Guides & FAQ'
+  material: 'Course Material'
+
+related_sites:
+  'Baudisgroup at UZH': 'http://info.baudisgroup.org'
+
+github_projects:
+  'compbiozurich': 'http://github.com/compbiozurich/'
+  'progenetix': 'http://github.com/progenetix/'
+
+# The categories-date-sorted parameter determines the selection of a
+# time sorted, year labeled listing template for those categories.
+categories-date-sorted:
+  - news
+# As above, for tags:
+tags-date-sorted:
+  - days
+
+# Only tags listed here are represented in the tag cloud.
+cloud_tags:
+  - code
+  - contacts
+  - documentation
+  - exam
+  - feedback
+  - FAQ
+  - Jekyll
+  - Markdown
+  - website
+  - slides
+  - data
+  - exercises
+  - teachers
+
+# additional Jekyll instructions
+plugins:
+ - jekyll-seo-tag
+type: website
+show_downloads: true
+future: true
+safe: false
+navigation_max_items: 4 # displayed sidebar links in current category
+emptyArray: []          # dummy element for array instantiation