Merge pull request #399 from ARTbio/patch_labels

fix labels of outputs for 5 tools, and bump to 0.9.1
ARTbio · Jun 24, 2019 · ac4b936 · ac4b936
2 parents 6619541 + 06c8d40
commit ac4b936
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Showing 5 changed files with 13 additions and 13 deletions.
diff --git a/tools/gsc_cpm_tpm_rpk/cpm_tpm_rpk.xml b/tools/gsc_cpm_tpm_rpk/cpm_tpm_rpk.xml
@@ -1,4 +1,4 @@
-<tool id="cpm_tpm_rpk" name="Generate CPM, TPM, RPK" version="0.9.0">
+<tool id="cpm_tpm_rpk" name="Generate CPM, TPM, RPK" version="0.9.1">
     <description>from raw counts expression values</description>
     <requirements>
         <requirement type="package" version="1.6.0">r-optparse</requirement>
@@ -76,10 +76,10 @@
         </param>
     </inputs>
     <outputs>
-        <data name="output" format="tabular" label="${option.type_transfo} from ${on_string}">
+        <data name="output" format="tabular" label="${option.type_transfo} of ${on_string}">
             <filter>log == "FALSE"</filter>
         </data>
-        <data name="output_log" format="tabular" label="log2(${option.type_transfo} +1) from ${on_string}">
+        <data name="output_log" format="tabular" label="log2(${option.type_transfo} +1) of ${on_string}">
             <filter>log == "TRUE"</filter>
         </data>
     </outputs>

diff --git a/tools/gsc_filter_cells/filter_cells.xml b/tools/gsc_filter_cells/filter_cells.xml
@@ -1,4 +1,4 @@
-<tool id="filter_cells" name="Filter cells data" version="0.9.0">
+<tool id="filter_cells" name="Filter cells data" version="0.9.1">
     <description>on total aligned reads and/or number of detected genes</description>
     <requirements>
         <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement>
@@ -54,8 +54,8 @@
     </inputs>
     <outputs>
         <data name="pdfplot" format="pdf" label="Plots from ${on_string}" />
-        <data name="output" format="tabular" label="Cell data filtered with ${on_string}" />
-        <data name="output_metada" format="tabular" label="Cell metadata filtered with ${on_string}" />
+        <data name="output" format="tabular" label="Cell data filtered from ${on_string}" />
+        <data name="output_metada" format="tabular" label="Cell metadata filtered from ${on_string}" />
     </outputs>
     <tests>
         <test>

diff --git a/tools/gsc_high_dimensions_visualisation/high_dim_visu.xml b/tools/gsc_high_dimensions_visualisation/high_dim_visu.xml
@@ -1,4 +1,4 @@
-<tool id="high_dimensions_visualisation" name="Generate PCA, tSNE and HCPC" version="0.9.0">
+<tool id="high_dimensions_visualisation" name="Generate PCA, tSNE and HCPC" version="0.9.1">
     <description>from highly dimensional expression data</description>
     <requirements>
         <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement>
@@ -166,8 +166,8 @@
 
     </inputs>
     <outputs>
-        <data name="pdf_out" format="pdf" label="${visualisation.visu_choice} on ${on_string}" />
-        <data name="table_coordinates" format="tabular" label="Scatter plot coordinates from ${tool.name} on ${on_string}" >
+        <data name="pdf_out" format="pdf" label="${visualisation.visu_choice} of ${on_string}" />
+        <data name="table_coordinates" format="tabular" label="Scatter plot coordinates from ${visualisation.visu_choice} of ${on_string}" >
             <filter>coord == 'yes'</filter>
         </data>
     </outputs>

diff --git a/tools/gsc_mannwhitney_de/mannwhitney_de.xml b/tools/gsc_mannwhitney_de/mannwhitney_de.xml
@@ -1,4 +1,4 @@
-<tool id="mannwhitney_de" name="Perform a differential analysis" version="0.9.0">
+<tool id="mannwhitney_de" name="Perform a differential analysis" version="0.9.1">
     <description>using a Mann-Whitney test</description>
     <requirements>
         <requirement type="package" version="1.3.2=r3.3.2_0">r-optparse</requirement>
@@ -43,7 +43,7 @@
 
     </inputs>
     <outputs>
-        <data name="output" format="tabular" label="Results of Mann-Whitney differential analysis from ${on_string}" />
+        <data name="output" format="tabular" label="Results of Mann-Whitney differential analysis of ${on_string}" />
     </outputs>
     <tests>
         <test>

diff --git a/tools/gsc_signature_score/signature_score.xml b/tools/gsc_signature_score/signature_score.xml
@@ -36,9 +36,9 @@
                help="signature gene that are not expressed in at least this percentage of cells will not be kept to compute the effective signature" />
     </inputs>
     <outputs>
-        <data name="pdf" format="pdf" label="Plots from ${on_string}" />
+        <data name="pdf" format="pdf" label="Signatures plots from ${on_string}" />
         <data name="output" format="tabular" label="signature scores from ${on_string}" />
-        <data name="stats" format="tabular" label="genes statistics in ${on_string}" />
+        <data name="stats" format="tabular" label="genes statistics from ${on_string}" />
     </outputs>
     <tests>
         <test>