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Issues list

Remove timepoint overide flattening in jax enhancement new Newly created
#2637 opened Jan 29, 2025 by FFroehlich
eqx.debug.backward_nan in master
#2629 opened Dec 16, 2024 by FFroehlich
JAX preequilibration may silently fail
#2628 opened Dec 16, 2024 by FFroehlich
Wrong conservation laws for pysb models bug PySB PySB import related
#2479 opened Jul 5, 2024 by FFroehlich
TimeCourse Implementation
#2450 opened May 15, 2024 by FFroehlich
3 of 5 tasks
1
slim down docker file
#2385 opened Mar 23, 2024 by FFroehlich
3
Move id member from ExpData to SimulationParameters
#1951 opened Jan 19, 2023 by FFroehlich
Documentation & Swig Overhaul documentation swig
#1950 opened Jan 19, 2023 by FFroehlich
2 tasks
2
mark benchmark tests flaky ci
#1914 opened Dec 16, 2022 by FFroehlich
7
PySBPetab sets incorrect value for edata.reinitializeFixedParameterInitialStates PEtab PEtab-import related PySB PySB import related
#1405 opened Feb 9, 2021 by FFroehlich
11
Allow hardcoding of numerical values PySB PySB import related python SBML SBML import related
#1192 opened Aug 7, 2020 by FFroehlich
1
residuals ignore events bug events related to handing discrete events SBML SBML import related
#1046 opened Apr 19, 2020 by FFroehlich
3
Harmonize Constant/FixedParameter/ConstantParameter breaking change Issue changes API in backwards-incompatible way refactoring
#975 opened Feb 22, 2020 by FFroehlich
3
Allow directly setting presimulation and preequilibration parameters in model enhancement python
#931 opened Jan 31, 2020 by FFroehlich
@FFroehlich
12
Sanity check on input for pysb import enhancement good first issue PySB PySB import related python
#918 opened Jan 21, 2020 by FFroehlich
@FFroehlich
second order models cant run with first order sensis 2nd order related to second order sensitivities c++ enhancement
#626 opened Feb 26, 2019 by FFroehlich small improvements
apply plist to augmented states 2nd order related to second order sensitivities enhancement
#274 opened Mar 10, 2018 by FFroehlich v0.13.0 second order models from python
1
move second order code from matlab to c++ code 2nd order related to second order sensitivities c++ enhancement
#264 opened Feb 20, 2018 by FFroehlich v0.13.0 second order models from python
2
add more FD features enhancement
#201 opened Oct 18, 2017 by FFroehlich
2 tasks
v0.12.0 finite difference models
1
adjoint sensitivies for models with events enhancement events related to handing discrete events
#18 opened Jul 18, 2016 by FFroehlich
1
@stephanmg
Separate output parameter and dynamic parameters enhancement
#11 opened Jul 12, 2016 by FFroehlich
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