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Hello,
Thanks for this free software.
I ran PEPPAN 1.0.6 successfully, but when I try to run the parser I got the following error, related to the captured group:
PEPPAN_parser -g blau_all.PEPPAN_head100.gff
Traceback (most recent call last):
File "/home/mibu/miniconda3/envs/bif2020/bin/PEPPAN_parser", line 8, in <module>
sys.exit(PEPPA_parser())
File "/home/mibu/miniconda3/envs/bif2020/lib/python3.8/site-packages/PEPPAN/PEPPAN_parser.py", line 206, in PEPPA_parser
ortho = getOrtho(param.gff, param.pseudogene)
File "/home/mibu/miniconda3/envs/bif2020/lib/python3.8/site-packages/PEPPAN/PEPPAN_parser.py", line 58, in getOrtho
orthos = [ [o, int(aId) if aId.isdigit() else -1] for o, aId in [ o.split(':')[1:3] for o in ortho.split(',') ]]
File "/home/mibu/miniconda3/envs/bif2020/lib/python3.8/site-packages/PEPPAN/PEPPAN_parser.py", line 58, in <listcomp>
orthos = [ [o, int(aId) if aId.isdigit() else -1] for o, aId in [ o.split(':')[1:3] for o in ortho.split(',') ]]
ValueError: not enough values to unpack (expected 2, got 1)
blau_all.PEPPAN_head100.gff contains the first 100 lines from the output gff from PEPPAN. I'm attaching it in case you want to test it (has .txt file type because github complains other way): blau_all.PEPPAN_head100.gff.txt
Hope this is enough information,
Regards
Jose Luis
The text was updated successfully, but these errors were encountered:
Hello,
Thanks for this free software.
I ran
PEPPAN 1.0.6
successfully, but when I try to run the parser I got the following error, related to the captured group:PEPPAN_parser -g blau_all.PEPPAN_head100.gff
blau_all.PEPPAN_head100.gff
contains the first 100 lines from the output gff from PEPPAN. I'm attaching it in case you want to test it (has.txt
file type because github complains other way):blau_all.PEPPAN_head100.gff.txt
Hope this is enough information,
Regards
Jose Luis
The text was updated successfully, but these errors were encountered: