With this script, we use SIAMCAT
to recapitulate the analysis from
Forslund et al., which identified Metformin-treatment as a potential
confounder for Type II diabetes studies. The analysis includes:
- the variance decomposition analysis for Metformin
- an example plot for Enterobacteriacaea (specI cluster 95)
- the machine learning analysis similar to the one performed in Forslund et al.