.travis.yml

# R for travis: see documentation at https://docs.travis-ci.com/user/languages/r

language: r
r: bioc-devel
cache:
  packages: true
warnings_are_errors: true

addons:
  apt:
    packages:
      - libnetcdf-dev
#      - netcdf-bin # libnetcdf-dev doesn't contain nc-config in ubuntu 12.04 (in 16.04 it is part of libnetcdf-dev)
      - libhdf5-dev
#      - texlive-latex-recommended
#      - texlive-fonts-extra
jobs:
  include:
    - stage: "Build"
      r_packages:
        - covr
        - testthat
        - knitr
        - roxygen2
        - S4Vectors
      before_install:
        - mkdir -p ~/.R
        - echo -e 'MAKEFLAGS = -j2' > ~/.R/Makevars
        - echo 'options(Ncpus = 2)' > ~/.Rprofile
        - echo 'options(repos = c(CRAN = "https://cran.rstudio.com"))' > ~/.Rprofile
        - echo 'utils::chooseCRANmirror(ind = 1)' > ~/.Rprofile
      script: true
      name: "Build dependencies and cache"
    - stage: "Check"
      r_build_args: --no-build-vignettes --no-manual
      r_check_args: --as-cran --no-build-vignettes --no-vignettes --no-manual --no-tests
      r_packages:
        - magick
      before_script: rm -rf vignettes
      install: skip
      name: "examples"
    - install: skip
      script:
        - travis_wait 10 R CMD build --no-build-vignettes --no-manual .
        - travis_wait 40 R CMD check --as-cran --no-build-vignettes --no-vignettes --no-manual --no-codoc --no-examples metaMS*tar.gz
      before_script: rm -rf vignettes
      name: "tests"
    - r_build_args:
      r_check_args: --as-cran --no-build-vignettes --no-codoc --no-examples --no-tests
      install: skip
      name: "vignettes"
    
      

# In general the r-travis script automatically dump the logs after failure but
# because of a bug in travis the output is often truncated. See
# https://github.com/travis-ci/travis-ci/issues/6018
after_failure: sleep 10

notifications:
  email:
    recipients: yann.guitton@gmail.com
    on_failure: change
    on_success: change