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generate_prediction

Preprocessing before generate predictions

  1. Parse the best model file: python3 predutils.py -p resource/data_upbm_selected_good_quality_final.csv

Generate All Possible Predictions

  1. Modify all the configurations in the gen_prediction.sh which are input directory, output directory, value of k-mer, and div (number of memory chunks required).
  2. Modify the SLURM configuration, it is located on top of gen_prediction.sh on every line started with #SBATCH especially the array setting, it should conform to the number of TFs.
  3. Run: sbatch gen_prediction.sh