Dockerfile

FROM onedep_tools

# force using bash shell
SHELL ["/bin/bash", "-c"]

# setup up ssh key used for accessing private repositories in git (webapps and resources_ro)
RUN mkdir -p -m 0600 ~/.ssh \
    && ssh-keyscan github.com >> ~/.ssh/known_hosts

# copy a ssh key authorised with github to this machine
COPY ssh/ /ssh/
RUN cp /ssh/id_rsa.pub ~/.ssh/id_rsa.pub && chmod 600 ~/.ssh/id_rsa.pub
RUN cp /ssh/id_rsa ~/.ssh/id_rsa && chmod 600 ~/.ssh/id_rsa

# setup a venv
ENV VENV=/venv
ENV PATH=$VENV/bin:$PATH
RUN python3 -m venv $VENV
RUN pip install --no-cache-dir --upgrade setuptools pip
RUN pip config --site set global.no-cache-dir false
RUN pip install wheel
RUN pip install wwpdb.utils.config

# for running apache with this version of python
RUN pip install mod-wsgi
RUN mod_wsgi-express install-module > /etc/httpd/conf.modules.d/02-wsgi.conf

# access to content server
ARG CS_USER
ARG CS_PW
ARG CS_URL

# locations for checkouts
ENV TOP_WWPDB_WEBAPPS_DIR=$ONEDEP_PATH/source/onedep-webfe/webapps
ENV RO_RESOURCE_PATH=$ONEDEP_PATH/resources_ro

WORKDIR $ONEDEP_PATH/onedep_admin
COPY . .

# build-dev means this builds the latest development release with --edit installations of packages
RUN python scripts/RunUpdate.py --skip-taxdb --skip-schema --skip-toolvers --build-dev |& tee $ONEDEP_PATH/python_install.log

# For building production system
#RUN python scripts/RunUpdate.py --skip-taxdb --skip-schema --skip-toolvers |& tee $ONEDEP_PATH/python_install.log

WORKDIR $ONEDEP_PATH

# temp develop install for site_admin for setting up database
#RUN git clone --branch develop git@github.com:wwPDB/py-wwpdb_apps_site_admin.git \
#    && cd py-wwpdb_apps_site_admin \
#    && pip install .