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+ *
+ * @requires jQuery UI 1.8.16
+ * @dependency
+ *
+ * @requires Biojs.Tooltip
+ * @dependency
+ *
+ * @param {Object} options An object with the options for Sequence component.
+ *
+ * @option {string} target
+ * Identifier of the DIV tag where the component should be displayed.
+ *
+ * @option {string} sequence
+ * The sequence to be displayed.
+ *
+ * @option {string} [id]
+ * Sequence identifier if apply.
+ *
+ * @option {string} [format="FASTA"]
+ * The display format for the sequence representation.
+ *
+ * @option {Object[]} [highlights]
+ * For highlighting multiple regions.
+ *
+ * [
+ * // Highlight aminoacids from 'start' to 'end' of the current strand using the specified 'color' (optional) and 'background' (optional).
+ * { start: <startVal1>, end: <endVal1> [, id:<idVal1>] [, color: <HTMLColor>] [, background: <HTMLColor>]},
+ * //
+ * // Any others highlights
+ * ...,
+ * //
+ * { start: <startValN>, end: <endValN> [, id:<idValN>] [, color: <HTMLColor>] [, background: <HTMLColor>]}
+ * ]
+ *
+ *
+ * highlights : [
+ * { start:30, end:42, color:"white", background:"green", id:"spin1" },
+ * { start:139, end:140 },
+ * { start:631, end:633, color:"white", background:"blue" }
+ * ]
+ *
+ *
+ * @option {Object} [columns={size:40,spacedEach:10}]
+ * Options for displaying the columns. Syntax: { size: <numCols>, spacedEach: <numCols>}
+ *
+ * @option {Object} [selection]
+ * Positions for the current selected region. Syntax: { start: <startValue>, end: <endValue>}
+ *
+ * @option {Object[]} [annotations]
+ * Set of overlapping annotations. Must be an array of objects following the syntax:
+ *
+ * [
+ * // An annotation:
+ * { name: <name>,
+ * html: <message>,
+ * color: <color_code>,
+ * regions: [{ start: <startVal1>, end: <endVal1> color: <HTMLColor>}, ...,{ start: <startValN>, end: <endValN>, color: <HTMLColor>}]
+ * },
+ *
+ * // ...
+ * // more annotations here
+ * // ...
+ * ]
+ *
+ * where:
+ *
+ * - name is the unique name for the annotation
+ * - html is the message (can be HTML) to be displayed in the tool tip.
+ * - color is the default HTML color code for all the regions.
+ * - regions array of objects defining the intervals which belongs to the annotation.
+ * - regions[i].start is the starting character for the i-th interval.
+ * - regions[i].end is the ending character for the i-th interval.
+ * - regions[i].color is an optional color for the i-th interval.
+ *
+ *
+ * @option {Object} [formatOptions={title:true, footer:true}]
+ * Options for displaying the title. by now just affecting the CODATA format.
+ *
+ * formatOptions : {
+ * title:false,
+ * footer:false
+ * }
+ *
+ *
+ * @example
+ * var theSequence = "METLCQRLNVCQDKILTHYENDSTDLRDHIDYWKHMRLECAIYYKAREMGFKHINHQVVPTLAVSKNKALQAIELQLTLETIYNSQYSNEKWTLQDVSLEVYLTAPTGCIKKHGYTVEVQFDGDICNTMHYTNWTHIYICEEAojs SVTVVEGQVDYYGLYYVHEGIRTYFVQFKDDAEKYSKNKVWEVHAGGQVILCPTSVFSSNEVSSPEIIRQHLANHPAATHTKAVALGTEETQTTIQRPRSEPDTGNPCHTTKLLHRDSVDSAPILTAFNSSHKGRINCNSNTTPIVHLKGDANTLKCLRYRFKKHCTLYTAVSSTWHWTGHNVKHKSAIVTLTYDSEWQRDQFLSQVKIPKTITVSTGFMSI";
+ * var mySequence = new Sequence({
+ * sequence : theSequence,
+ * target : "YourOwnDivId",
+ * format : 'CODATA',
+ * id : 'P918283',
+ * annotations: [
+ * { name:"CATH",
+ * color:"#F0F020",
+ * html: "Using color code #F0F020 ",
+ * regions: [{start: 122, end: 135}]
+ * },
+ * { name:"TEST",
+ * html:"<br> Example of <b>HTML</b>",
+ * color:"green",
+ * regions: [
+ * {start: 285, end: 292},
+ * {start: 293, end: 314, color: "#2E4988"}]
+ * }
+ * ],
+ * highlights : [
+ * { start:30, end:42, color:"white", background:"green", id:"spin1" },
+ * { start:139, end:140 },
+ * { start:631, end:633, color:"white", background:"blue" }
+ * ]
+ * });
+ *
+ */
+
+ var Class = require('js-class');
+ var EVT_ON_SELECTION_CHANGE = 'onSelectionChange';
+ var EVT_ON_SELECTION_CHANGED = 'onSelectionChanged';
+ var EVT_ON_ANNOTATION_CLICKED = 'onAnnotationClicked';
+ __webpack_require__.g.Sequence = Class( /** @lends Sequence# */
+ {
+ constructor: function constructor(options) {
+ var self = this;
+ this.opt = jQuery.extend(this.opt, options);
+ this._container = jQuery(this.opt.target);
+
+ // legacy support (target id without '#')
+ if (this._container.length == 0) {
+ this._container = jQuery('#' + this.opt.target);
+ }
+ if (this._container.length == 0) {
+ console.log('empty target container');
+ }
+
+ // legacy: copy target id
+ this.opt.target = this._container[0].id;
+
+ // Lazy initialization
+ this._container.ready(function () {
+ this._ready = false;
+ self._initialize();
+ });
+ },
+ /**
+ * Default values for the options
+ * @name Sequence-opt
+ */
+ opt: {
+ sequence: '',
+ id: '',
+ target: '',
+ format: 'FASTA',
+ selection: {
+ start: 0,
+ end: 0
+ },
+ columns: {
+ size: 35,
+ spacedEach: 10
+ },
+ highlights: [],
+ annotations: [],
+ sequenceUrl: 'http://www.ebi.ac.uk/das-srv/uniprot/das/uniprot/sequence',
+ // Styles
+ selectionColor: 'Yellow',
+ selectionFontColor: 'black',
+ highlightFontColor: 'red',
+ highlightBackgroundColor: 'white',
+ fontColor: 'inherit',
+ backgroundColor: 'inherit',
+ width: undefined,
+ height: undefined,
+ formatSelectorVisible: true
+ },
+ /**
+ * Array containing the supported event names
+ * @name Sequence-eventTypes
+ */
+ eventTypes: [
+ /**
+ * @name Sequence#onSelectionChanged
+ * @event
+ * @param {function} actionPerformed An function which receives an {@link Biojs.Event} object as argument.
+ * @eventData {Object} source The component which did triggered the event.
+ * @eventData {string} type The name of the event.
+ * @eventData {int} start A number indicating the start of the selection.
+ * @eventData {int} end A number indicating the ending of selection.
+ * @example
+ * mySequence.onSelectionChanged(
+ * function( objEvent ) {
+ * alert("Selected: " + objEvent.start + ", " + objEvent.end );
+ * }
+ * );
+ *
+ * */
+ 'onSelectionChanged',
+ /**
+ * @name Sequence#onSelectionChange
+ * @event
+ * @param {function} actionPerformed An function which receives an {@link Biojs.Event} object as argument.
+ * @eventData {Object} source The component which did triggered the event.
+ * @eventData {string} type The name of the event.
+ * @eventData {int} start A number indicating the start of the selection.
+ * @eventData {int} end A number indicating the ending of selection.
+ * @example
+ * mySequence.onSelectionChange(
+ * function( objEvent ) {
+ * alert("Selection in progress: " + objEvent.start + ", " + objEvent.end );
+ * }
+ * );
+ *
+ *
+ * */
+ 'onSelectionChange',
+ /**
+ * @name Sequence#onAnnotationClicked
+ * @event
+ * @param {function} actionPerformed An function which receives an {@link Biojs.Event} object as argument.
+ * @eventData {Object} source The component which did triggered the event.
+ * @eventData {string} type The name of the event.
+ * @eventData {string} name The name of the selected annotation.
+ * @eventData {int} pos A number indicating the position of the selected amino acid.
+ * @example
+ * mySequence.onAnnotationClicked(
+ * function( objEvent ) {
+ * alert("Clicked " + objEvent.name + " on position " + objEvent.pos );
+ * }
+ * );
+ *
+ * */
+ 'onAnnotationClicked'],
+ getId: function getId() {
+ return this.opt.id;
+ },
+ // internal members
+ _headerDiv: null,
+ _contentDiv: null,
+ // Methods
+
+ _initialize: function _initialize() {
+ if (this.opt.width !== undefined) {
+ this._container.width(this.opt.width);
+ }
+ if (this.opt.height !== undefined) {
+ this._container.height(this.opt.height);
+ }
+
+ // DIV for the format selector
+ this._buildFormatSelector();
+
+ // DIV for the sequence
+ this._contentDiv = jQuery('').appendTo(this._container);
+
+ // Initialize highlighting
+ this._highlights = this.opt.highlights;
+
+ // Initialize annotations
+ this._annotations = this.opt.annotations;
+
+ //Initialize tooltip
+ var tooltip = 'sequenceTip' + this.opt.target;
+ jQuery('').appendTo('.fastan-content').addClass('absolute top-0 left-0').show();
+ this.opt._tooltip = document.getElementById(tooltip);
+ if (this.opt.sequence) {
+ this._redraw();
+ } else if (this.opt.id) {
+ this._requestSequence(this.opt.id);
+ } else {
+ this.clearSequence('No sequence available', '../biojs/css/images/warning_icon.png');
+ }
+ this._ready = true;
+ },
+ /**
+ * Shows the columns indicated by the indexes array.
+ * @param {string} seq The sequence strand.
+ * @param {string} [identifier] Sequence identifier.
+ *
+ * @example
+ * mySequence.setSequence("P99999");
+ *
+ */
+ setSequence: function setSequence(seq, identifier) {
+ if (seq.match(/^([A-N,R-Z][0-9][A-Z][A-Z, 0-9][A-Z, 0-9][0-9])|([O,P,Q][0-9][A-Z, 0-9][A-Z, 0-9][A-Z, 0-9][0-9])(\.\d+)?$/i)) {
+ this._requestSequence(arguments[0]);
+ } else {
+ this.opt.sequence = seq;
+ this.opt.id = identifier;
+ this._highlights = [];
+ this._highlightsCount = 0;
+ this.opt.selection = {
+ start: 0,
+ end: 0
+ };
+ this._annotations = [];
+ this._contentDiv.children().remove();
+ this._redraw();
+ }
+ },
+ _requestSequence: function _requestSequence(accession) {
+ var self = this;
+ console.log('Requesting sequence for: ' + accession);
+ jQuery.ajax({
+ url: self.opt.sequenceUrl,
+ dataType: 'xml',
+ data: {
+ segment: accession
+ }
+ }).done(function (xml) {
+ try {
+ var sequenceNode = jQuery(xml).find('SEQUENCE:first');
+ self.setSequence(sequenceNode.text(), sequenceNode.attr('id'), sequenceNode.attr('label'));
+ } catch (e) {
+ console.log('Error decoding response data: ' + e.message);
+ self.clearSequence('No sequence available', '../biojs/css/images/warning_icon.png');
+ }
+ }).fail(function (jqXHR, textStatus, errorThrown) {
+ console.log('Error requesting the sequence: ' + textStatus);
+ self.clearSequence('Error requesting the sequence to the server ' + this.url, '../biojs/css/images/warning_icon.png');
+ });
+ },
+ /**
+ * Shows the columns indicated by the indexes array.
+ * @param {string} [showMessage] Message to be showed.
+ * @param {string} [icon] Icon to be showed a side of the message
+ *
+ * @example
+ * mySequence.clearSequence("No sequence available", "../biojs/css/images/warning_icon.png");
+ *
+ */
+ clearSequence: function clearSequence(showMessage, icon) {
+ var message = undefined;
+ this.opt.sequence = '';
+ this.opt.id = '';
+ this._highlights = [];
+ this._highlightsCount = 0;
+ this.opt.selection = {
+ start: 0,
+ end: 0
+ };
+ this._annotations = [];
+ this._contentDiv.children().remove();
+ this._headerDiv.hide();
+ if (undefined !== showMessage) {
+ message = jQuery('' + showMessage + '
').appendTo(this._contentDiv).addClass('message');
+ if (undefined !== icon) {
+ message.css({
+ 'background': 'transparent url("' + icon + '") no-repeat center left',
+ 'padding-left': '20px'
+ });
+ }
+ }
+ },
+ /**
+ * Set the current selection in the sequence causing the event {@link Sequence#onSelectionChanged}
+ *
+ * @example
+ * // set selection from the position 100 to 150
+ * mySequence.setSelection(100, 150);
+ *
+ * @param {int} start The starting character of the selection.
+ * @param {int} end The ending character of the selection
+ */
+ setSelection: function setSelection(start, end) {
+ if (start > end) {
+ var aux = end;
+ end = start;
+ start = aux;
+ }
+ if (start != this.opt.selection.start || end != this.opt.selection.end) {
+ this._setSelection(start, end);
+ this.trigger(EVT_ON_SELECTION_CHANGED, {
+ 'start': start,
+ 'end': end
+ });
+ }
+ },
+ _buildFormatSelector: function _buildFormatSelector() {
+ var self = this;
+ console.log('build format selector container', this._container);
+ this._headerDiv = jQuery('').appendTo(this._container);
+ this._headerDiv.append('Format: ');
+ this._formatSelector = jQuery('').appendTo(self._headerDiv);
+ this._formatSelector.change(function (e) {
+ self.opt.format = jQuery(this).val();
+ self._redraw();
+ });
+ this._formatSelector.val(self.opt.format);
+ this.formatSelectorVisible(this.opt.formatSelectorVisible);
+ },
+ /**
+ * Highlights a region using the font color defined in {Sequence#highlightFontColor} by default is red.
+ *
+ * @example
+ * // highlight the characters within the position 100 to 150, included.
+ * mySequence.addHighlight( { "start": 100, "end": 150, "color": "white", "background": "red", "id": "aaa" } );
+ *
+ * @param {Object} h The highlight defined as follows:
+ *
+ *
+ * @return {int} representing the id of the highlight on the internal array. Returns -1 on failure
+ */
+ addHighlight: function addHighlight(h) {
+ var id = '-1';
+ var color = '';
+ var background = '';
+ var highlight = {};
+ if (h instanceof Object && h.start <= h.end) {
+ color = 'string' == typeof h.color ? h.color : this.opt.highlightFontColor;
+ background = 'string' == typeof h.background ? h.background : this.opt.highlightBackgroundColor;
+ id = 'string' == typeof h.id ? h.id : new Number(this._highlightsCount++).toString();
+ highlight = {
+ 'start': h.start,
+ 'end': h.end,
+ 'color': color,
+ 'background': background,
+ 'id': id
+ };
+ this._highlights.push(highlight);
+ this._applyHighlight(highlight);
+ this._restoreSelection(h.start, h.end);
+ }
+ return id;
+ },
+ /*
+ * Function: Sequence._applyHighlight
+ * Purpose: Apply the specified color and background to a region between 'start' and 'end'.
+ * Returns: -
+ * Inputs: highlight -> {Object} An object containing the fields start (int), end (int),
+ * color (HTML color string) and background (HTML color string).
+ */
+ _applyHighlight: function _applyHighlight(highlight) {
+ var zindex = 0,
+ z = 0,
+ o = 0;
+ var seq = this._contentDiv.find('.sequence');
+ for (var i = highlight.start - 1; i < highlight.end; i++) {
+ zindex = jQuery(seq[i]).css('z-index');
+ if (zindex == 'auto') {
+ z = 1;
+ o = 1;
+ } else {
+ z = 0;
+ o = 0.5;
+ }
+ jQuery(seq[i]).css({
+ 'color': highlight.color,
+ 'background-color': highlight.background,
+ 'z-index': z,
+ 'opacity': o
+ }).addClass('highlighted');
+ }
+ },
+ /*
+ * Function: Sequence._applyHighlights
+ * Purpose: Apply the specified highlights.
+ * Returns: -
+ * Inputs: highlights -> {Object[]} An array containing the highlights to be applied.
+ */
+ _applyHighlights: function _applyHighlights(highlights) {
+ for (var i in highlights) {
+ this._applyHighlight(highlights[i]);
+ }
+ },
+ /*
+ * Function: Sequence._restoreHighlights
+ * Purpose: Repaint the highlights in the specified region.
+ * Returns: -
+ * Inputs: start -> {int} Start of the region to be restored.
+ * end -> {int} End of the region to be restored.
+ */
+ _restoreHighlights: function _restoreHighlights(start, end) {
+ var h = this._highlights;
+ // paint the region using default blank settings
+ this._applyHighlight({
+ 'start': start,
+ 'end': end,
+ 'color': this.opt.fontColor,
+ 'background': this.opt.backgroundColor
+ });
+ // restore highlights in that region
+ for (var i in h) {
+ // interval intersects with highlight i ?
+ if (!(h[i].start > end || h[i].end < start)) {
+ a = h[i].start < start ? start : h[i].start;
+ b = h[i].end > end ? end : h[i].end;
+ this._applyHighlight({
+ 'start': a,
+ 'end': b,
+ 'color': h[i].color,
+ 'background': h[i].background
+ });
+ }
+ }
+ },
+ /*
+ * Function: Sequence._restoreSelection
+ * Purpose: Repaint the current selection in the specified region.
+ * It is used in the case of any highlight do overriding of the current selection.
+ * Returns: -
+ * Inputs: start -> {int} Start of the region to be restored.
+ * end -> {int} End of the region to be restored.
+ */
+ _restoreSelection: function _restoreSelection(start, end) {
+ var sel = this.opt.selection;
+ // interval intersects with current selection ?
+ // restore selection
+ if (!(start > sel.end || end < sel.start)) {
+ a = start < sel.start ? sel.start : start;
+ b = end > sel.end ? sel.end : end;
+ this._applyHighlight({
+ 'start': a,
+ 'end': b,
+ 'color': this.opt.selectionFontColor,
+ 'background': this.opt.selectionColor
+ });
+ }
+ },
+ /**
+ * Remove a highlight.
+ *
+ * @example
+ * // Clear the highlighted characters within the position 100 to 150, included.
+ * mySequence.removeHighlight("spin1");
+ *
+ * @param {string} id The id of the highlight on the internal array. This value is returned by method highlight.
+ */
+ removeHighlight: function removeHighlight(id) {
+ var h = this._highlights;
+ for (i in h) {
+ if (h[i].id == id) {
+ start = h[i].start;
+ end = h[i].end;
+ h.splice(i, 1);
+ this._restoreHighlights(start, end);
+ this._restoreSelection(start, end);
+ break;
+ }
+ }
+ },
+ /**
+ * Remove all the highlights of whole sequence.
+ *
+ * @example
+ * mySequence.removeAllHighlights();
+ */
+ removeAllHighlights: function removeAllHighlights() {
+ this._highlights = [];
+ this._restoreHighlights(1, this.opt.sequence.length);
+ this._restoreSelection(1, this.opt.sequence.length);
+ },
+ /**
+ * Changes the current displaying format of the sequence.
+ *
+ * @example
+ * // Set format to 'FASTA'.
+ * mySequence.setFormat('FASTA');
+ *
+ * @param {string} format The format for the sequence to be displayed.
+ */
+ setFormat: function setFormat(format) {
+ if (this.opt.format != format.toUpperCase()) {
+ this.opt.format = format.toUpperCase();
+ this._redraw();
+ }
+ var self = this;
+ // Changes the option in the combo box
+ this._headerDiv.find('option').each(function () {
+ if (jQuery(this).val() == self.opt.format.toUpperCase()) {
+ jQuery(this).attr('selected', 'selected');
+ }
+ });
+ },
+ /**
+ * Changes the current number of columns in the displayed sequence.
+ *
+ * @example
+ * // Set the number of columns to 70.
+ * mySequence.setNumCols(70);
+ *
+ * @param {int} numCols The number of columns.
+ */
+ setNumCols: function setNumCols(numCols) {
+ this.opt.columns.size = numCols;
+ this._redraw();
+ },
+ /**
+ * Set the visibility of the drop-down list of formats.
+ *
+ * @param {boolean} visible true: show; false: hide.
+ */
+ formatSelectorVisible: function formatSelectorVisible(visible) {
+ if (visible) {
+ this._headerDiv.show();
+ } else {
+ this._headerDiv.hide();
+ }
+ },
+ /**
+ * This is similar to a {Biojs.Protein3D#formatSelectorVisible} with the 'true' argument.
+ *
+ * @example
+ * // Shows the format selector.
+ * mySequence.showFormatSelector();
+ *
+ */
+ showFormatSelector: function showFormatSelector() {
+ this._headerDiv.show();
+ },
+ /**
+ * This is similar to a {Biojs.Protein3D#formatSelectorVisible} with the 'false' argument.
+ *
+ * @example
+ * // Hides the format selector.
+ * mySequence.hideFormatSelector();
+ *
+ */
+ hideFormatSelector: function hideFormatSelector() {
+ this._headerDiv.hide();
+ },
+ /**
+ * Hides the whole component.
+ *
+ */
+ hide: function hide() {
+ this._headerDiv.hide();
+ this._contentDiv.hide();
+ },
+ /**
+ * Shows the whole component.
+ *
+ */
+ show: function show() {
+ this._headerDiv.show();
+ this._contentDiv.show();
+ },
+ /*
+ * Function: Sequence._setSelection
+ * Purpose: Update the current selection.
+ * Returns: -
+ * Inputs: start -> {int} Start of the region to be selected.
+ * end -> {int} End of the region to be selected.
+ */
+ _setSelection: function _setSelection(start, end) {
+ //alert("adsas");
+
+ var current = this.opt.selection;
+ var change = {};
+
+ // Which is the change on selection?
+ if (current.start == start) {
+ // forward?
+ if (current.end < end) {
+ change.start = current.end;
+ change.end = end;
+ } else {
+ this._restoreHighlights(end + 1, current.end);
+ }
+ } else if (current.end == end) {
+ // forward?
+ if (current.start > start) {
+ change.start = start;
+ change.end = current.start;
+ } else {
+ this._restoreHighlights(current.start, start - 1);
+ }
+ } else {
+ this._restoreHighlights(current.start, current.end);
+ change.start = start;
+ change.end = end;
+ }
+ current.start = start;
+ current.end = end;
+ },
+ /*
+ * Function: Sequence._repaintSelection
+ * Purpose: Repaint the whole current selection.
+ * Returns: -
+ * Inputs: -
+ */
+ _repaintSelection: function _repaintSelection() {
+ var s = this.opt.selection;
+ this._setSelection(0, 0);
+ this._setSelection(s.start, s.end);
+ },
+ /*
+ * Function: Sequence._redraw
+ * Purpose: Repaint the current sequence.
+ * Returns: -
+ * Inputs: -
+ */
+ _redraw: function _redraw() {
+ var i = 0;
+ var self = this;
+
+ // Reset the content
+ //this._contentDiv.text('');
+ this._contentDiv.children().remove();
+
+ // Rebuild the spans of the sequence
+ // according to format
+ if (this.opt.format == 'RAW') {
+ this._drawRaw();
+ } else if (this.opt.format == 'CODATA') {
+ this._drawCodata();
+ } else if (this.opt.format == 'FASTA') {
+ this._drawFasta();
+ } else {
+ this.opt.format = 'PRIDE';
+ this._drawPride();
+ }
+
+ // Restore the highlighted regions
+ this._applyHighlights(this._highlights);
+ this._repaintSelection();
+ this._addSpanEvents();
+ },
+ /*
+ * Function: Sequence._drawFasta
+ * Purpose: Repaint the current sequence using FASTA format.
+ * Returns: -
+ * Inputs: -
+ */
+ _drawFasta: function _drawFasta() {
+ var self = this;
+ var a = this.opt.sequence.toUpperCase().split('');
+ var pre = jQuery('').appendTo(this._contentDiv);
+ var i = 1;
+ var arr = [];
+ var str = '>' + this.opt.id + ' ' + a.length + ' bp
';
+
+ /* Correct column size in case the sequence is as small peptide */
+ var numCols = this.opt.columns.size;
+ if (this.opt.sequence.length < this.opt.columns.size) {
+ numCols = this.opt.sequence.length;
+ }
+ var opt = {
+ numCols: numCols,
+ numColsForSpace: 0
+ };
+ str += this._drawSequence(a, opt);
+ pre.html(str);
+ this._drawAnnotations(opt);
+ },
+ /*
+ * Function: Sequence._drawCodata
+ * Purpose: Repaint the current sequence using CODATA format.
+ * Returns: -
+ * Inputs: -
+ */
+ _drawCodata: function _drawCodata() {
+ var seq = this.opt.sequence.toUpperCase().split('');
+
+ // Add header.
+ if (this.opt.formatOptions !== undefined) {
+ if (this.opt.formatOptions.title !== undefined) {
+ if (this.opt.formatOptions.title != false) {
+ var header = jquery__WEBPACK_IMPORTED_MODULE_0___default()('').addClass('header').appendTo(this._contentDiv);
+ header.html('ENTRY ' + this.opt.id + '
SEQUENCE
');
+ }
+ }
+ }
+
+ /* Correct column size in case the sequence is as small peptide */
+ var numCols = this.opt.columns.size;
+ if (this.opt.sequence.length < this.opt.columns.size) {
+ numCols = this.opt.sequence.length;
+ }
+ var opt = {
+ numLeft: true,
+ numLeftSize: 7,
+ numLeftPad: ' ',
+ numTop: true,
+ numTopEach: 5,
+ numCols: numCols,
+ numColsForSpace: 0,
+ spaceBetweenChars: true
+ };
+ this._drawSequence(seq, opt);
+
+ // Add footer.
+ if (this.opt.formatOptions !== undefined) {
+ if (this.opt.formatOptions.footer !== undefined) {
+ if (this.opt.formatOptions.footer != false) {
+ var footer = jquery__WEBPACK_IMPORTED_MODULE_0___default()('').addClass('footer').appendTo(this._contentDiv);
+ footer.html('
///');
+ }
+ }
+ }
+ this._drawAnnotations(opt);
+ },
+ /*
+ * Function: Sequence._drawAnnotations
+ * Purpose: Paint the annotations on the sequence.
+ * Returns: -
+ * Inputs: settings -> {object}
+ */
+ _drawAnnotations: function _drawAnnotations(settings) {
+ var self = this;
+ var a = this.opt.sequence.toLowerCase().split('');
+ var annotations = this._annotations;
+ var leftSpaces = '';
+ var row = '';
+ var annot = '';
+
+ // Index at the left?
+ if (settings.numLeft) {
+ leftSpaces += this._formatIndex(' ', settings.numLeftSize + 2, ' ');
+ }
+ for (var i = 0; i < a.length; i += settings.numCols) {
+ row = '';
+ for (var key in annotations) {
+ annotations[key].id = this.getId() + '_' + key;
+ annot = this._getHTMLRowAnnot(i + 1, annotations[key], settings);
+ if (annot.length > 0) {
+ row += '
';
+ row += leftSpaces;
+ row += annot;
+ row += '
';
+ }
+ }
+ var numCols = settings.numCols;
+ var charRemaining = a.length - i;
+ if (charRemaining < numCols) {
+ numCols = charRemaining;
+ }
+ if (settings.numRight) {
+ jQuery(row).insertAfter('div#' + self.opt.target + ' div pre span#numRight_' + this.getId() + '_' + (i + numCols));
+ } else {
+ jQuery(row).insertAfter('div#' + self.opt.target + ' div pre span#' + this.getId() + '_' + (i + numCols));
+ }
+ }
+
+ // add tool tips and background' coloring effect
+ jQuery(this._contentDiv).find('.annotation').each(function () {
+ self._addToolTip(this, function () {
+ return self._getAnnotationString(jQuery(this).attr('id'));
+ });
+ jQuery(this).mouseover(function (e) {
+ jQuery('.annotation.' + jQuery(e.target).attr('id')).each(function () {
+ jQuery(this).css('background-color', jQuery(this).attr('color'));
+ });
+ }).mouseout(function () {
+ jQuery('.annotation').css('background-color', 'transparent');
+ }).click(function (e) {
+ var name = undefined;
+ var id = jQuery(e.target).attr('id');
+ for (var i = 0; i < self._annotations.length; i++) {
+ if (self._annotations[i].id == id) {
+ name = self._annotations[i].name;
+ continue;
+ }
+ }
+ self.trigger(EVT_ON_ANNOTATION_CLICKED, {
+ 'name': name
+ //"pos": parseInt( jQuery(e.target).attr("pos") )
+ });
+ });
+ });
+ },
+ /*
+ * Function: Sequence._getAnnotationString
+ * Purpose: Get the annotation text message for the tooltip
+ * Returns: {string} Annotation text for the annotation
+ * Inputs: id -> {int} index of the internal annotation array
+ */
+ _getAnnotationString: function _getAnnotationString(id) {
+ var annotation = this._annotations[id.substr(id.indexOf('_') + 1)];
+ return annotation.name + '
' + (annotation.html ? annotation.html : '');
+ },
+ /*
+ * Function: Sequence._getHTMLRowAnnot
+ * Purpose: Build an annotation
+ * Returns: HTML of the annotation
+ * Inputs: currentPos -> {int}
+ * annotation -> {Object}
+ * settings -> {Object}
+ */
+ _getHTMLRowAnnot: function _getHTMLRowAnnot(currentPos, annotation, settings) {
+ var styleBegin = 'border-left:1px solid; border-bottom:1px solid; border-color:';
+ var styleOn = 'border-bottom:1px solid; border-color:';
+ var styleEnd = 'border-bottom:1px solid; border-right:1px solid; border-color:';
+ var styleBeginAndEnd = 'border-left:1px solid; border-right:1px solid; border-bottom:1px solid; border-color:';
+ var row = [];
+ var end = currentPos + settings.numCols;
+ var spaceBetweenChars = settings.spaceBetweenChars ? ' ' : '';
+ var defaultColor = annotation.color;
+ var id = annotation.id;
+ for (var pos = currentPos; pos < end; pos++) {
+ // regions
+ for (var r in annotation.regions) {
+ region = annotation.regions[r];
+ spaceAfter = '';
+ spaceAfter += pos % settings.numColsForSpace == 0 ? ' ' : '';
+ spaceAfter += spaceBetweenChars;
+ color = region.color ? region.color : defaultColor;
+ data = 'class="annotation ' + id + '" id="' + id + '" color="' + color + '" pos="' + pos + '"';
+ if (pos == region.start && pos == region.end) {
+ row[pos] = ' ';
+ row[pos] += spaceAfter;
+ row[pos] += '';
+ } else if (pos == region.start) {
+ row[pos] = ' ';
+ row[pos] += spaceAfter;
+ row[pos] += '';
+ } else if (pos == region.end) {
+ row[pos] = ' ';
+ //row[pos] += spaceAfter;
+ row[pos] += '';
+ } else if (pos > region.start && pos < region.end) {
+ row[pos] = ' ';
+ row[pos] += spaceAfter;
+ row[pos] += '';
+ } else if (!row[pos]) {
+ row[pos] = ' ';
+ row[pos] += spaceAfter;
+ }
+ }
+ }
+ var str = row.join('');
+ return str.indexOf('span') == -1 ? '' : str;
+ },
+ /*
+ * Function: Sequence._drawRaw
+ * Purpose: Repaint the current sequence using RAW format.
+ * Returns: -
+ * Inputs: -
+ */
+ _drawRaw: function _drawRaw() {
+ var self = this;
+ var a = this.opt.sequence.toLowerCase().split('');
+ var i = 0;
+ var arr = [];
+ var pre = jQuery('').appendTo(this._contentDiv);
+
+ /* Correct column size in case the sequence is as small peptide */
+ var numCols = this.opt.columns.size;
+ if (this.opt.sequence.length < this.opt.columns.size) {
+ numCols = this.opt.sequence.length;
+ }
+ var opt = {
+ numCols: numCols
+ };
+ pre.html(this._drawSequence(a, opt));
+ this._drawAnnotations(opt);
+ },
+ /*
+ * Function: Sequence._drawPride
+ * Purpose: Repaint the current sequence using PRIDE format.
+ * Returns: -
+ * Inputs: -
+ */
+ _drawPride: function _drawPride() {
+ var seq = this.opt.sequence.toUpperCase().split('');
+
+ /* Correct column size in case the sequence is as small peptide */
+ var numCols = this.opt.columns.size;
+ if (this.opt.sequence.length < this.opt.columns.size) {
+ numCols = this.opt.sequence.length;
+ }
+ var opt = {
+ numLeft: true,
+ numLeftSize: 5,
+ numLeftPad: ' ',
+ numRight: false,
+ numRightSize: 5,
+ numRightPad: '',
+ numCols: numCols,
+ numColsForSpace: this.opt.columns.spacedEach
+ };
+ this._drawSequence(seq, opt);
+ this._drawAnnotations(opt);
+ },
+ /*
+ * Function: Sequence._drawSequence
+ * Purpose: Repaint the current sequence using CUSTOM format.
+ * Returns: -
+ * Inputs: a -> {char[]} a The sequence strand.
+ * opt -> {Object} opt The CUSTOM format.
+ */
+ _drawSequence: function _drawSequence(a, opt) {
+ var indL = '';
+ var indT = '';
+ var indR = '\n';
+ var str = '';
+
+ // Index at top?
+ if (opt.numTop) {
+ indT += '';
+ var size = opt.spaceBetweenChars ? opt.numTopEach * 2 : opt.numTopEach;
+ if (opt.numLeft) {
+ indT += this._formatIndex(' ', opt.numLeftSize, ' ');
+ }
+ indT += this._formatIndex(' ', size, ' ');
+ for (var x = opt.numTopEach; x < opt.numCols; x += opt.numTopEach) {
+ indT += this._formatIndex(x, size, ' ', true);
+ }
+ indT += '';
+ }
+
+ // Index at the left?
+ if (opt.numLeft) {
+ indL += '' + a[i - 1] + '';
+ if (opt.numRight) {
+ indR += ' 0) {
+ indL += '';
+ }
+ var ret = [];
+ if (opt.numTop) {
+ jquery__WEBPACK_IMPORTED_MODULE_0___default()('').html(indT).addClass('indT').css({
+ color: '#aaa'
+ }).appendTo(this._contentDiv);
+ }
+ if (opt.numLeft) {
+ jquery__WEBPACK_IMPORTED_MODULE_0___default()('').html(indL).addClass('indL hidden sm:inline-block').appendTo(this._contentDiv);
+ }
+ jquery__WEBPACK_IMPORTED_MODULE_0___default()('').html(str).addClass('seqF inline-block').appendTo(this._contentDiv);
+ if (opt.numRight) {
+ jquery__WEBPACK_IMPORTED_MODULE_0___default()('').html(indR).addClass('indR').css({
+ color: '#aaa',
+ display: 'inline-block'
+ }).appendTo(this._contentDiv);
+ }
+ return str;
+ },
+ /*
+ * Function: Sequence._formatIndex
+ * Purpose: Build the HTML corresponding to counting numbers (top, left, right) in the strand.
+ * Returns: -
+ * Inputs: number -> {int} The number
+ * size -> {int} Number of bins to suit the number.
+ * fillingChar -> {char} Character to be used for filling out blank bins.
+ * alignLeft -> {bool} Tell if aligned to the left.
+ */
+ _formatIndex: function _formatIndex(number, size, fillingChar, alignLeft) {
+ var str = number.toString();
+ var filling = '';
+ var padding = size - str.length;
+ if (padding > 0) {
+ while (padding-- > 0) {
+ filling += '' + fillingChar + '';
+ }
+ if (alignLeft) {
+ str = number + filling;
+ } else {
+ str = filling + number;
+ }
+ }
+ return str;
+ },
+ /*
+ * Function: Sequence._addSpanEvents
+ * Purpose: Add the event handlers to the strand.
+ * Returns: -
+ * Inputs: -
+ */
+ _addSpanEvents: function _addSpanEvents() {
+ var self = this;
+ var isMouseDown = false;
+ var clickPos;
+ var currentPos;
+ self._contentDiv.find('.sequence').each(function () {
+ // Register the starting position
+ jQuery(this).mousedown(function () {
+ var id = jQuery(this).attr('id');
+ currentPos = parseInt(id.substr(id.indexOf('_') + 1));
+ clickPos = currentPos;
+ self._setSelection(clickPos, currentPos);
+ isMouseDown = true;
+
+ // Selection is happening, raise an event
+ self.trigger(EVT_ON_SELECTION_CHANGE, {
+ 'start': self.opt.selection.start,
+ 'end': self.opt.selection.end
+ });
+ }).mouseover(function () {
+ // Update selection
+ // Show tooltip containing the position
+ var id = jQuery(this).attr('id');
+ currentPos = parseInt(id.substr(id.indexOf('_') + 1));
+ if (isMouseDown) {
+ if (currentPos > clickPos) {
+ self._setSelection(clickPos, currentPos);
+ } else {
+ self._setSelection(currentPos, clickPos);
+ }
+
+ // Selection is happening, raise an event
+ self.trigger(EVT_ON_SELECTION_CHANGE, {
+ 'start': self.opt.selection.start,
+ 'end': self.opt.selection.end
+ });
+ }
+ }).mouseup(function () {
+ isMouseDown = false;
+ // Selection is done, raise an event
+ self.trigger(EVT_ON_SELECTION_CHANGED, {
+ 'start': self.opt.selection.start,
+ 'end': self.opt.selection.end
+ });
+ });
+
+ // Add a tooltip for this sequence base.
+ self._addToolTip.call(self, this, function () {
+ if (isMouseDown) {
+ return '[' + self.opt.selection.start + ', ' + self.opt.selection.end + ']';
+ } else {
+ return currentPos;
+ }
+ });
+ }).css('cursor', 'pointer');
+ },
+ /*
+ * Function: Sequence._addTooltip
+ * Purpose: Add a tooltip around the target DOM element provided as argument
+ * Returns: -
+ * Inputs: target -> {Element} DOM element wich is the targeted focus for the tooltip.
+ * cbGetMessageFunction -> {function} A callback function wich returns the message to be displayed in the tip.
+ */
+ _addToolTip: function _addToolTip(target, cbGetMessageFunction) {
+ var tipId = this.opt._tooltip;
+ jQuery(target).mouseover(function (e) {
+ var offset = jQuery(e.target).offset();
+ var containerOffset = jQuery(e.target).closest('.seqF').offset();
+ if (!jQuery(tipId).is(':visible')) {
+ jQuery(tipId).css({
+ 'background-color': '#000',
+ 'padding': '3px 10px 3px 10px',
+ 'top': offset.top - containerOffset.top + jQuery(e.target).height() + 15 + 'px',
+ 'left': offset.left - containerOffset.left + jQuery(e.target).width() + 70 + 'px',
+ 'color': '#fff',
+ 'font-size': '12px',
+ 'position': 'absolute'
+ }).animate({
+ opacity: '0.85'
+ }, 10).html(cbGetMessageFunction.call(target)).show();
+ }
+ }).mouseout(function () {
+ //Remove the appended tooltip template
+ jQuery(tipId).hide();
+ });
+ },
+ /**
+ * Annotate a set of intervals provided in the argument.
+ *
+ * @example
+ * // Annotations using regions with different colors.
+ * mySequence.addAnnotation({
+ * name:"UNIPROT",
+ * html:"<br> Example of <b>HTML</b>",
+ * color:"green",
+ * regions: [
+ * {start: 540, end: 560},
+ * {start: 561, end:580, color: "#FFA010"},
+ * {start: 581, end:590, color: "red"},
+ * {start: 690, end:710}]
+ * });
+ *
+ *
+ * @param {Object} annotation The intervals belonging to the same annotation.
+ * Syntax: { name: <value>, color: <HTMLColorCode>, html: <HTMLString>, regions: [{ start: <startVal1>, end: <endVal1>}, ..., { start: <startValN>, end: <endValN>}] }
+ */
+ addAnnotation: function addAnnotation(annotation) {
+ this._annotations.push(annotation);
+ this._redraw();
+ },
+ /**
+ * Removes an annotation by means of its name.
+ *
+ * @example
+ * // Remove the UNIPROT annotation.
+ * mySequence.removeAnnotation('UNIPROT');
+ *
+ * @param {string} name The name of the annotation to be removed.
+ *
+ */
+ removeAnnotation: function removeAnnotation(name) {
+ for (var i = 0; i < this._annotations.length; i++) {
+ if (name != this._annotations[i].name) {
+ this._annotations.splice(i, 1);
+ this._redraw();
+ break;
+ }
+ }
+ },
+ /**
+ * Removes all the current annotations.
+ *
+ * @example
+ * mySequence.removeAllAnnotations();
+ *
+ */
+ removeAllAnnotations: function removeAllAnnotations() {
+ this._annotations = [];
+ this._redraw();
+ }
+ });
+ require('biojs-events').mixin(Sequence.prototype);
+ }, {
+ 'biojs-events': 2,
+ 'jquery-browser-plugin': 20,
+ 'js-class': 22
+ }],
+ 2: [function (require, module, exports) {
+ var events = require('backbone-events-standalone');
+ events.onAll = function (callback, context) {
+ this.on('all', callback, context);
+ return this;
+ };
+
+ // Mixin utility
+ events.oldMixin = events.mixin;
+ events.mixin = function (proto) {
+ events.oldMixin(proto);
+ // add custom onAll
+ var exports = ['onAll'];
+ for (var i = 0; i < exports.length; i++) {
+ var name = exports[i];
+ proto[name] = this[name];
+ }
+ return proto;
+ };
+ module.exports = events;
+ }, {
+ 'backbone-events-standalone': 4
+ }],
+ 3: [function (require, module, exports) {
+ /**
+ * Standalone extraction of Backbone.Events, no external dependency required.
+ * Degrades nicely when Backone/underscore are already available in the current
+ * global context.
+ *
+ * Note that docs suggest to use underscore's `_.extend()` method to add Events
+ * support to some given object. A `mixin()` method has been added to the Events
+ * prototype to avoid using underscore for that sole purpose:
+ *
+ * var myEventEmitter = BackboneEvents.mixin({});
+ *
+ * Or for a function constructor:
+ *
+ * function MyConstructor(){}
+ * MyConstructor.prototype.foo = function(){}
+ * BackboneEvents.mixin(MyConstructor.prototype);
+ *
+ * (c) 2009-2013 Jeremy Ashkenas, DocumentCloud Inc.
+ * (c) 2013 Nicolas Perriault
+ */
+ /* global exports:true, define, module */
+ (function () {
+ var root = this,
+ breaker = {},
+ nativeForEach = Array.prototype.forEach,
+ hasOwnProperty = Object.prototype.hasOwnProperty,
+ slice = Array.prototype.slice,
+ idCounter = 0;
+
+ // Returns a partial implementation matching the minimal API subset required
+ // by Backbone.Events
+ function miniscore() {
+ return {
+ keys: Object.keys || function (obj) {
+ if (_typeof(obj) !== 'object' && typeof obj !== 'function' || obj === null) {
+ throw new TypeError('keys() called on a non-object');
+ }
+ var key,
+ keys = [];
+ for (key in obj) {
+ if (obj.hasOwnProperty(key)) {
+ keys[keys.length] = key;
+ }
+ }
+ return keys;
+ },
+ uniqueId: function uniqueId(prefix) {
+ var id = ++idCounter + '';
+ return prefix ? prefix + id : id;
+ },
+ has: function has(obj, key) {
+ return hasOwnProperty.call(obj, key);
+ },
+ each: function each(obj, iterator, context) {
+ if (obj == null) return;
+ if (nativeForEach && obj.forEach === nativeForEach) {
+ obj.forEach(iterator, context);
+ } else if (obj.length === +obj.length) {
+ for (var i = 0, l = obj.length; i < l; i++) {
+ if (iterator.call(context, obj[i], i, obj) === breaker) return;
+ }
+ } else {
+ for (var key in obj) {
+ if (this.has(obj, key)) {
+ if (iterator.call(context, obj[key], key, obj) === breaker) return;
+ }
+ }
+ }
+ },
+ once: function once(func) {
+ var ran = false,
+ memo;
+ return function () {
+ if (ran) return memo;
+ ran = true;
+ memo = func.apply(this, arguments);
+ func = null;
+ return memo;
+ };
+ }
+ };
+ }
+ var _ = miniscore(),
+ Events;
+
+ // Backbone.Events
+ // ---------------
+
+ // A module that can be mixed in to *any object* in order to provide it with
+ // custom events. You may bind with `on` or remove with `off` callback
+ // functions to an event; `trigger`-ing an event fires all callbacks in
+ // succession.
+ //
+ // var object = {};
+ // _.extend(object, Backbone.Events);
+ // object.on('expand', function(){ alert('expanded'); });
+ // object.trigger('expand');
+ //
+ Events = {
+ // Bind an event to a `callback` function. Passing `"all"` will bind
+ // the callback to all events fired.
+ on: function on(name, callback, context) {
+ if (!eventsApi(this, 'on', name, [callback, context]) || !callback) return this;
+ this._events || (this._events = {});
+ var events = this._events[name] || (this._events[name] = []);
+ events.push({
+ callback: callback,
+ context: context,
+ ctx: context || this
+ });
+ return this;
+ },
+ // Bind an event to only be triggered a single time. After the first time
+ // the callback is invoked, it will be removed.
+ once: function once(name, callback, context) {
+ if (!eventsApi(this, 'once', name, [callback, context]) || !callback) return this;
+ var self = this;
+ var once = _.once(function () {
+ self.off(name, once);
+ callback.apply(this, arguments);
+ });
+ once._callback = callback;
+ return this.on(name, once, context);
+ },
+ // Remove one or many callbacks. If `context` is null, removes all
+ // callbacks with that function. If `callback` is null, removes all
+ // callbacks for the event. If `name` is null, removes all bound
+ // callbacks for all events.
+ off: function off(name, callback, context) {
+ var retain, ev, events, names, i, l, j, k;
+ if (!this._events || !eventsApi(this, 'off', name, [callback, context])) return this;
+ if (!name && !callback && !context) {
+ this._events = {};
+ return this;
+ }
+ names = name ? [name] : _.keys(this._events);
+ for (i = 0, l = names.length; i < l; i++) {
+ name = names[i];
+ if (events = this._events[name]) {
+ this._events[name] = retain = [];
+ if (callback || context) {
+ for (j = 0, k = events.length; j < k; j++) {
+ ev = events[j];
+ if (callback && callback !== ev.callback && callback !== ev.callback._callback || context && context !== ev.context) {
+ retain.push(ev);
+ }
+ }
+ }
+ if (!retain.length) delete this._events[name];
+ }
+ }
+ return this;
+ },
+ // Trigger one or many events, firing all bound callbacks. Callbacks are
+ // passed the same arguments as `trigger` is, apart from the event name
+ // (unless you're listening on `"all"`, which will cause your callback to
+ // receive the true name of the event as the first argument).
+ trigger: function trigger(name) {
+ if (!this._events) return this;
+ var args = slice.call(arguments, 1);
+ if (!eventsApi(this, 'trigger', name, args)) return this;
+ var events = this._events[name];
+ var allEvents = this._events.all;
+ if (events) triggerEvents(events, args);
+ if (allEvents) triggerEvents(allEvents, arguments);
+ return this;
+ },
+ // Tell this object to stop listening to either specific events ... or
+ // to every object it's currently listening to.
+ stopListening: function stopListening(obj, name, callback) {
+ var listeners = this._listeners;
+ if (!listeners) return this;
+ var deleteListener = !name && !callback;
+ if (_typeof(name) === 'object') callback = this;
+ if (obj) (listeners = {})[obj._listenerId] = obj;
+ for (var id in listeners) {
+ listeners[id].off(name, callback, this);
+ if (deleteListener) delete this._listeners[id];
+ }
+ return this;
+ }
+ };
+
+ // Regular expression used to split event strings.
+ var eventSplitter = /\s+/;
+
+ // Implement fancy features of the Events API such as multiple event
+ // names `"change blur"` and jQuery-style event maps `{change: action}`
+ // in terms of the existing API.
+ var eventsApi = function eventsApi(obj, action, name, rest) {
+ if (!name) return true;
+
+ // Handle event maps.
+ if (_typeof(name) === 'object') {
+ for (var key in name) {
+ obj[action].apply(obj, [key, name[key]].concat(rest));
+ }
+ return false;
+ }
+
+ // Handle space separated event names.
+ if (eventSplitter.test(name)) {
+ var names = name.split(eventSplitter);
+ for (var i = 0, l = names.length; i < l; i++) {
+ obj[action].apply(obj, [names[i]].concat(rest));
+ }
+ return false;
+ }
+ return true;
+ };
+
+ // A difficult-to-believe, but optimized internal dispatch function for
+ // triggering events. Tries to keep the usual cases speedy (most internal
+ // Backbone events have 3 arguments).
+ var triggerEvents = function triggerEvents(events, args) {
+ var ev,
+ i = -1,
+ l = events.length,
+ a1 = args[0],
+ a2 = args[1],
+ a3 = args[2];
+ switch (args.length) {
+ case 0:
+ while (++i < l) (ev = events[i]).callback.call(ev.ctx);
+ return;
+ case 1:
+ while (++i < l) (ev = events[i]).callback.call(ev.ctx, a1);
+ return;
+ case 2:
+ while (++i < l) (ev = events[i]).callback.call(ev.ctx, a1, a2);
+ return;
+ case 3:
+ while (++i < l) (ev = events[i]).callback.call(ev.ctx, a1, a2, a3);
+ return;
+ default:
+ while (++i < l) (ev = events[i]).callback.apply(ev.ctx, args);
+ }
+ };
+ var listenMethods = {
+ listenTo: 'on',
+ listenToOnce: 'once'
+ };
+
+ // Inversion-of-control versions of `on` and `once`. Tell *this* object to
+ // listen to an event in another object ... keeping track of what it's
+ // listening to.
+ _.each(listenMethods, function (implementation, method) {
+ Events[method] = function (obj, name, callback) {
+ var listeners = this._listeners || (this._listeners = {});
+ var id = obj._listenerId || (obj._listenerId = _.uniqueId('l'));
+ listeners[id] = obj;
+ if (_typeof(name) === 'object') callback = this;
+ obj[implementation](name, callback, this);
+ return this;
+ };
+ });
+
+ // Aliases for backwards compatibility.
+ Events.bind = Events.on;
+ Events.unbind = Events.off;
+
+ // Mixin utility
+ Events.mixin = function (proto) {
+ var exports = ['on', 'once', 'off', 'trigger', 'stopListening', 'listenTo', 'listenToOnce', 'bind', 'unbind'];
+ _.each(exports, function (name) {
+ proto[name] = this[name];
+ }, this);
+ return proto;
+ };
+
+ // Export Events as BackboneEvents depending on current context
+ if (typeof define === 'function') {
+ define(function () {
+ return Events;
+ });
+ } else if (typeof exports !== 'undefined') {
+ if (typeof module !== 'undefined' && module.exports) {
+ exports = module.exports = Events;
+ }
+ exports.BackboneEvents = Events;
+ } else {
+ root.BackboneEvents = Events;
+ }
+ })(this);
+ }, {}],
+ 4: [function (require, module, exports) {
+ module.exports = require('./backbone-events-standalone');
+ }, {
+ './backbone-events-standalone': 3
+ }],
+ 5: [function (require, module, exports) {
+ // Generated by CoffeeScript 1.8.0
+ var GenericReader, xhr;
+ xhr = require('nets');
+ module.exports = GenericReader = function () {
+ function GenericReader() {}
+ GenericReader.read = function (url, callback) {
+ var onret;
+ onret = function (_this) {
+ return function (err, response, text) {
+ return _this._onRetrieval(text, callback);
+ };
+ }(this);
+ return xhr(url, onret);
+ };
+ GenericReader._onRetrieval = function (text, callback) {
+ var rText;
+ rText = this.parse(text);
+ return callback(rText);
+ };
+ return GenericReader;
+ }();
+ }, {
+ 'nets': 12
+ }],
+ 6: [function (require, module, exports) {
+ // Generated by CoffeeScript 1.8.0
+ var Fasta,
+ GenericReader,
+ Seq,
+ Str,
+ __hasProp = {}.hasOwnProperty,
+ __extends = function __extends(child, parent) {
+ for (var key in parent) {
+ if (__hasProp.call(parent, key)) child[key] = parent[key];
+ }
+ function ctor() {
+ this.constructor = child;
+ }
+ ctor.prototype = parent.prototype;
+ child.prototype = new ctor();
+ child.__super__ = parent.prototype;
+ return child;
+ };
+ Str = require('./strings');
+ GenericReader = require('./generic_reader');
+ Seq = require('biojs-model').seq;
+ module.exports = Fasta = function (_super) {
+ __extends(Fasta, _super);
+ function Fasta() {
+ return Fasta.__super__.constructor.apply(this, arguments);
+ }
+ Fasta.parse = function (text) {
+ var currentSeq, database, databaseID, identifiers, k, label, line, seqs, _i, _len;
+ seqs = [];
+ if (Object.prototype.toString.call(text) !== '[object Array]') {
+ text = text.split('\n');
+ }
+ for (_i = 0, _len = text.length; _i < _len; _i++) {
+ line = text[_i];
+ if (line[0] === '>' || line[0] === ';') {
+ label = line.slice(1);
+ currentSeq = new Seq('', label, seqs.length);
+ seqs.push(currentSeq);
+ if (Str.contains('|', line)) {
+ identifiers = label.split('|');
+ k = 1;
+ while (k < identifiers.length) {
+ database = identifiers[k];
+ databaseID = identifiers[k + 1];
+ currentSeq.meta[database] = databaseID;
+ k += 2;
+ }
+ currentSeq.name = identifiers[identifiers.length - 1];
+ }
+ } else {
+ currentSeq.seq += line;
+ }
+ }
+ return seqs;
+ };
+ return Fasta;
+ }(GenericReader);
+ }, {
+ './generic_reader': 5,
+ './strings': 7,
+ 'biojs-model': 10
+ }],
+ 7: [function (require, module, exports) {
+ // Generated by CoffeeScript 1.8.0
+ var strings;
+ strings = {
+ contains: function contains(text, search) {
+ return ''.indexOf.call(text, search, 0) !== -1;
+ }
+ };
+ module.exports = strings;
+ }, {}],
+ 8: [function (require, module, exports) {
+ // Generated by CoffeeScript 1.8.0
+ var Utils;
+ Utils = {};
+ Utils.splitNChars = function (txt, num) {
+ var i, result, _i, _ref;
+ result = [];
+ for (i = _i = 0, _ref = txt.length - 1; num > 0 ? _i <= _ref : _i >= _ref; i = _i += num) {
+ result.push(txt.substr(i, num));
+ }
+ return result;
+ };
+ module.exports = Utils;
+ }, {}],
+ 9: [function (require, module, exports) {
+ // Generated by CoffeeScript 1.8.0
+ var FastaExporter, Utils;
+ Utils = require('./utils');
+ module.exports = FastaExporter = function () {
+ function FastaExporter() {}
+ FastaExporter['export'] = function (seqs, access) {
+ var seq, text, _i, _len;
+ text = '';
+ for (_i = 0, _len = seqs.length; _i < _len; _i++) {
+ seq = seqs[_i];
+ if (access != null) {
+ seq = access(seq);
+ }
+ text += '>' + seq.name + '\n';
+ text += Utils.splitNChars(seq.seq, 80).join('\n');
+ text += '\n';
+ }
+ return text;
+ };
+ return FastaExporter;
+ }();
+ }, {
+ './utils': 8
+ }],
+ 10: [function (require, module, exports) {
+ module.exports.seq = require('./seq');
+ }, {
+ './seq': 11
+ }],
+ 11: [function (require, module, exports) {
+ module.exports = function (seq, name, id) {
+ this.seq = seq;
+ this.name = name;
+ this.id = id;
+ this.meta = {};
+ };
+ }, {}],
+ 12: [function (require, module, exports) {
+ var req = require('request');
+ module.exports = Nets;
+ function Nets(uri, opts, cb) {
+ req(uri, opts, cb);
+ }
+ }, {
+ 'request': 13
+ }],
+ 13: [function (require, module, exports) {
+ var window = require('global/window');
+ var once = require('once');
+ var parseHeaders = require('parse-headers');
+ var messages = {
+ '0': 'Internal XMLHttpRequest Error',
+ '4': '4xx Client Error',
+ '5': '5xx Server Error'
+ };
+ var XHR = window.XMLHttpRequest || noop;
+ var XDR = 'withCredentials' in new XHR() ? XHR : window.XDomainRequest;
+ module.exports = createXHR;
+ function createXHR(options, callback) {
+ if (typeof options === 'string') {
+ options = {
+ uri: options
+ };
+ }
+ options = options || {};
+ callback = once(callback);
+ var xhr = options.xhr || null;
+ if (!xhr) {
+ if (options.cors || options.useXDR) {
+ xhr = new XDR();
+ } else {
+ xhr = new XHR();
+ }
+ }
+ var uri = xhr.url = options.uri || options.url;
+ var method = xhr.method = options.method || 'GET';
+ var body = options.body || options.data;
+ var headers = xhr.headers = options.headers || {};
+ var sync = !!options.sync;
+ var isJson = false;
+ var key;
+ var load = options.response ? loadResponse : loadXhr;
+ if ('json' in options) {
+ isJson = true;
+ headers['Accept'] = 'application/json';
+ if (method !== 'GET' && method !== 'HEAD') {
+ headers['Content-Type'] = 'application/json';
+ body = JSON.stringify(options.json);
+ }
+ }
+ xhr.onreadystatechange = readystatechange;
+ xhr.onload = load;
+ xhr.onerror = error;
+ // IE9 must have onprogress be set to a unique function.
+ xhr.onprogress = function () {
+ // IE must die
+ };
+ // hate IE
+ xhr.ontimeout = noop;
+ xhr.open(method, uri, !sync);
+ //backward compatibility
+ if (options.withCredentials || options.cors && options.withCredentials !== false) {
+ xhr.withCredentials = true;
+ }
+
+ // Cannot set timeout with sync request
+ if (!sync) {
+ xhr.timeout = 'timeout' in options ? options.timeout : 5000;
+ }
+ if (xhr.setRequestHeader) {
+ for (key in headers) {
+ if (headers.hasOwnProperty(key)) {
+ xhr.setRequestHeader(key, headers[key]);
+ }
+ }
+ } else if (options.headers) {
+ throw new Error('Headers cannot be set on an XDomainRequest object');
+ }
+ if ('responseType' in options) {
+ xhr.responseType = options.responseType;
+ }
+ if ('beforeSend' in options && typeof options.beforeSend === 'function') {
+ options.beforeSend(xhr);
+ }
+ xhr.send(body);
+ return xhr;
+ function readystatechange() {
+ if (xhr.readyState === 4) {
+ load();
+ }
+ }
+ function getBody() {
+ // Chrome with requestType=blob throws errors arround when even testing access to responseText
+ var body = null;
+ if (xhr.response) {
+ body = xhr.response;
+ } else if (xhr.responseType === 'text' || !xhr.responseType) {
+ body = xhr.responseText || xhr.responseXML;
+ }
+ if (isJson) {
+ try {
+ body = JSON.parse(body);
+ } catch (e) {}
+ }
+ return body;
+ }
+ function getStatusCode() {
+ return xhr.status === 1223 ? 204 : xhr.status;
+ }
+
+ // if we're getting a none-ok statusCode, build & return an error
+ function errorFromStatusCode(status, body) {
+ var error = null;
+ if (status === 0 || status >= 400 && status < 600) {
+ var message = (typeof body === 'string' ? body : false) || messages[String(status).charAt(0)];
+ error = new Error(message);
+ error.statusCode = status;
+ }
+ return error;
+ }
+
+ // will load the data & process the response in a special response object
+ function loadResponse() {
+ var status = getStatusCode();
+ var body = getBody();
+ var error = errorFromStatusCode(status, body);
+ var response = {
+ body: body,
+ statusCode: status,
+ statusText: xhr.statusText,
+ raw: xhr
+ };
+ if (xhr.getAllResponseHeaders) {
+ //remember xhr can in fact be XDR for CORS in IE
+ response.headers = parseHeaders(xhr.getAllResponseHeaders());
+ } else {
+ response.headers = {};
+ }
+ callback(error, response, response.body);
+ }
+
+ // will load the data and add some response properties to the source xhr
+ // and then respond with that
+ function loadXhr() {
+ var status = getStatusCode();
+ var error = errorFromStatusCode(status);
+ xhr.status = xhr.statusCode = status;
+ xhr.body = getBody();
+ xhr.headers = parseHeaders(xhr.getAllResponseHeaders());
+ callback(error, xhr, xhr.body);
+ }
+ function error(evt) {
+ callback(evt, xhr);
+ }
+ }
+ function noop() {}
+ }, {
+ 'global/window': 14,
+ 'once': 15,
+ 'parse-headers': 19
+ }],
+ 14: [function (require, module, exports) {
+ (function (global) {
+ if (typeof window !== 'undefined') {
+ module.exports = window;
+ } else if (typeof global !== 'undefined') {
+ module.exports = global;
+ } else if (typeof self !== 'undefined') {
+ module.exports = self;
+ } else {
+ module.exports = {};
+ }
+ }).call(this, typeof __webpack_require__.g !== 'undefined' ? __webpack_require__.g : typeof self !== 'undefined' ? self : typeof window !== 'undefined' ? window : {});
+ }, {}],
+ 15: [function (require, module, exports) {
+ module.exports = once;
+ once.proto = once(function () {
+ Object.defineProperty(Function.prototype, 'once', {
+ value: function value() {
+ return once(this);
+ },
+ configurable: true
+ });
+ });
+ function once(fn) {
+ var called = false;
+ return function () {
+ if (called) return;
+ called = true;
+ return fn.apply(this, arguments);
+ };
+ }
+ }, {}],
+ 16: [function (require, module, exports) {
+ var isFunction = require('is-function');
+ module.exports = forEach;
+ var toString = Object.prototype.toString;
+ var hasOwnProperty = Object.prototype.hasOwnProperty;
+ function forEach(list, iterator, context) {
+ if (!isFunction(iterator)) {
+ throw new TypeError('iterator must be a function');
+ }
+ if (arguments.length < 3) {
+ context = this;
+ }
+ if (toString.call(list) === '[object Array]') forEachArray(list, iterator, context);else if (typeof list === 'string') forEachString(list, iterator, context);else forEachObject(list, iterator, context);
+ }
+ function forEachArray(array, iterator, context) {
+ for (var i = 0, len = array.length; i < len; i++) {
+ if (hasOwnProperty.call(array, i)) {
+ iterator.call(context, array[i], i, array);
+ }
+ }
+ }
+ function forEachString(string, iterator, context) {
+ for (var i = 0, len = string.length; i < len; i++) {
+ // no such thing as a sparse string.
+ iterator.call(context, string.charAt(i), i, string);
+ }
+ }
+ function forEachObject(object, iterator, context) {
+ for (var k in object) {
+ if (hasOwnProperty.call(object, k)) {
+ iterator.call(context, object[k], k, object);
+ }
+ }
+ }
+ }, {
+ 'is-function': 17
+ }],
+ 17: [function (require, module, exports) {
+ module.exports = isFunction;
+ var toString = Object.prototype.toString;
+ function isFunction(fn) {
+ var string = toString.call(fn);
+ return string === '[object Function]' || typeof fn === 'function' && string !== '[object RegExp]' || typeof window !== 'undefined' && (
+ // IE8 and below
+ fn === window.setTimeout || fn === window.alert || fn === window.confirm || fn === window.prompt);
+ }
+ }, {}],
+ 18: [function (require, module, exports) {
+ exports = module.exports = trim;
+ function trim(str) {
+ return str.replace(/^\s*|\s*$/g, '');
+ }
+ exports.left = function (str) {
+ return str.replace(/^\s*/, '');
+ };
+ exports.right = function (str) {
+ return str.replace(/\s*$/, '');
+ };
+ }, {}],
+ 19: [function (require, module, exports) {
+ var trim = require('trim'),
+ forEach = require('for-each'),
+ isArray = function isArray(arg) {
+ return Object.prototype.toString.call(arg) === '[object Array]';
+ };
+ module.exports = function (headers) {
+ if (!headers) return {};
+ var result = {};
+ forEach(trim(headers).split('\n'), function (row) {
+ var index = row.indexOf(':'),
+ key = trim(row.slice(0, index)).toLowerCase(),
+ value = trim(row.slice(index + 1));
+ if (typeof result[key] === 'undefined') {
+ result[key] = value;
+ } else if (isArray(result[key])) {
+ result[key].push(value);
+ } else {
+ result[key] = [result[key], value];
+ }
+ });
+ return result;
+ };
+ }, {
+ 'for-each': 16,
+ 'trim': 18
+ }],
+ 20: [function (require, module, exports) {
+ module.exports = require('./jquery.browser');
+ }, {
+ './jquery.browser': 21
+ }],
+ 21: [function (require, module, exports) {
+ /*!
+ * jQuery Browser Plugin v0.0.6
+ * https://github.com/gabceb/jquery-browser-plugin
+ *
+ * Original jquery-browser code Copyright 2005, 2013 jQuery Foundation, Inc. and other contributors
+ * http://jquery.org/license
+ *
+ * Modifications Copyright 2013 Gabriel Cebrian
+ * https://github.com/gabceb
+ *
+ * Released under the MIT license
+ *
+ * Date: 2013-07-29T17:23:27-07:00
+ */
+
+ var matched, browser;
+ var uaMatch = function uaMatch(ua) {
+ ua = ua.toLowerCase();
+ var match = /(opr)[\/]([\w.]+)/.exec(ua) || /(chrome)[ \/]([\w.]+)/.exec(ua) || /(version)[ \/]([\w.]+).*(safari)[ \/]([\w.]+)/.exec(ua) || /(webkit)[ \/]([\w.]+)/.exec(ua) || /(opera)(?:.*version|)[ \/]([\w.]+)/.exec(ua) || /(msie) ([\w.]+)/.exec(ua) || ua.indexOf('trident') >= 0 && /(rv)(?::| )([\w.]+)/.exec(ua) || ua.indexOf('compatible') < 0 && /(mozilla)(?:.*? rv:([\w.]+)|)/.exec(ua) || [];
+ var platform_match = /(ipad)/.exec(ua) || /(iphone)/.exec(ua) || /(android)/.exec(ua) || /(windows phone)/.exec(ua) || /(win)/.exec(ua) || /(mac)/.exec(ua) || /(linux)/.exec(ua) || /(cros)/i.exec(ua) || [];
+ return {
+ browser: match[3] || match[1] || '',
+ version: match[2] || '0',
+ platform: platform_match[0] || ''
+ };
+ };
+ matched = uaMatch(window.navigator.userAgent);
+ browser = {};
+ browser.uaMatch = uaMatch;
+ if (matched.browser) {
+ browser[matched.browser] = true;
+ browser.version = matched.version;
+ browser.versionNumber = parseInt(matched.version);
+ }
+ if (matched.platform) {
+ browser[matched.platform] = true;
+ }
+
+ // These are all considered mobile platforms, meaning they run a mobile browser
+ if (browser.android || browser.ipad || browser.iphone || browser['windows phone']) {
+ browser.mobile = true;
+ }
+
+ // These are all considered desktop platforms, meaning they run a desktop browser
+ if (browser.cros || browser.mac || browser.linux || browser.win) {
+ browser.desktop = true;
+ }
+
+ // Chrome, Opera 15+ and Safari are webkit based browsers
+ if (browser.chrome || browser.opr || browser.safari) {
+ browser.webkit = true;
+ }
+
+ // IE11 has a new token so we will assign it msie to avoid breaking changes
+ if (browser.rv) {
+ var ie = 'msie';
+ matched.browser = ie;
+ browser[ie] = true;
+ }
+
+ // Opera 15+ are identified as opr
+ if (browser.opr) {
+ var opera = 'opera';
+ matched.browser = opera;
+ browser[opera] = true;
+ }
+
+ // Stock Android browsers are marked as Safari on Android.
+ if (browser.safari && browser.android) {
+ var android = 'android';
+ matched.browser = android;
+ browser[android] = true;
+ }
+
+ // Assign the name and platform variable
+ browser.name = matched.browser;
+ browser.platform = matched.platform;
+ module.exports = browser;
+ }, {}],
+ 22: [function (require, module, exports) {
+ (function (global) {
+ /** @preserve http://github.com/easeway/js-class */
+
+ // Class Definition using ECMA5 prototype chain
+
+ function inherit(dest, src, noParent) {
+ while (src && src !== Object.prototype) {
+ Object.getOwnPropertyNames(src).forEach(function (name) {
+ if (name != '.class' && !dest.hasOwnProperty(name)) {
+ var desc = Object.getOwnPropertyDescriptor(src, name);
+ Object.defineProperty(dest, name, desc);
+ }
+ });
+ if (noParent) {
+ break;
+ }
+ src = src.__proto__;
+ }
+ return dest;
+ }
+ var _Class = function Class(base, proto, options) {
+ if (typeof base != 'function') {
+ options = proto;
+ proto = base;
+ base = Object;
+ }
+ if (!proto) {
+ proto = {};
+ }
+ if (!options) {
+ options = {};
+ }
+ var meta = {
+ name: options.name,
+ base: base,
+ "implements": []
+ };
+ var classProto = _Class.clone(proto);
+ if (options["implements"]) {
+ (Array.isArray(options["implements"]) ? options["implements"] : [options["implements"]]).forEach(function (implementedType) {
+ if (typeof implementedType == 'function' && implementedType.prototype) {
+ meta["implements"].push(implementedType);
+ _Class.extend(classProto, implementedType.prototype);
+ }
+ });
+ }
+ classProto.__proto__ = base.prototype;
+ var theClass = function theClass() {
+ if (typeof this.constructor == 'function') {
+ this.constructor.apply(this, arguments);
+ }
+ };
+ meta.type = theClass;
+ theClass.prototype = classProto;
+ Object.defineProperty(theClass, '.class.meta', {
+ value: meta,
+ enumerable: false,
+ configurable: false,
+ writable: false
+ });
+ Object.defineProperty(classProto, '.class', {
+ value: theClass,
+ enumerable: false,
+ configurable: false,
+ writable: false
+ });
+ if (options.statics) {
+ _Class.extend(theClass, options.statics);
+ }
+ return theClass;
+ };
+ _Class.extend = inherit;
+ _Class.clone = function (object) {
+ return inherit({}, object);
+ };
+ function findType(meta, type) {
+ while (meta) {
+ if (meta.type.prototype === type.prototype) {
+ return true;
+ }
+ for (var i in meta["implements"]) {
+ var implType = meta["implements"][i];
+ var implMeta = implType['.class.meta'];
+ if (implMeta) {
+ if (findType(implMeta, type)) {
+ return true;
+ }
+ } else {
+ for (var proto = implType.prototype; proto; proto = proto.__proto__) {
+ if (proto === type.prototype) {
+ return true;
+ }
+ }
+ }
+ }
+ meta = meta.base ? meta.base['.class.meta'] : undefined;
+ }
+ return false;
+ }
+ var Checker = _Class({
+ constructor: function constructor(object) {
+ this.object = object;
+ },
+ typeOf: function typeOf(type) {
+ if (this.object instanceof type) {
+ return true;
+ }
+ var meta = _Class.typeInfo(this.object);
+ return meta && findType(meta, type);
+ }
+ });
+
+ // aliases
+ Checker.prototype.a = Checker.prototype.typeOf;
+ Checker.prototype.an = Checker.prototype.typeOf;
+ _Class.is = function (object) {
+ return new Checker(object);
+ };
+ _Class.typeInfo = function (object) {
+ var theClass = object.__proto__['.class'];
+ return theClass ? theClass['.class.meta'] : undefined;
+ };
+ _Class.VERSION = [0, 0, 2];
+ if (module) {
+ module.exports = _Class;
+ } else {
+ global.Class = _Class; // for browser
+ }
+ }).call(this, typeof __webpack_require__.g !== 'undefined' ? __webpack_require__.g : typeof self !== 'undefined' ? self : typeof window !== 'undefined' ? window : {});
+ }, {}],
+ 'biojs-io-fasta': [function (require, module, exports) {
+ // Generated by CoffeeScript 1.8.0
+ module.exports.parse = require('./parser');
+ module.exports.writer = require('./writer');
+ }, {
+ './parser': 6,
+ './writer': 9
+ }],
+ 'biojs-vis-sequence': [function (require, module, exports) {
+ module.exports = require('./lib/index');
+ }, {
+ './lib/index': 1
+ }]
+}, {}, ['biojs-vis-sequence']);
+
+/***/ }),
+
+/***/ "./public/js/sequence_modal.js":
+/*!*************************************!*\
+ !*** ./public/js/sequence_modal.js ***!
+ \*************************************/
+/***/ ((__unused_webpack_module, __webpack_exports__, __webpack_require__) => {
+
+"use strict";
+__webpack_require__.r(__webpack_exports__);
+/* harmony export */ __webpack_require__.d(__webpack_exports__, {
+/* harmony export */ "default": () => (/* binding */ SequenceModal)
+/* harmony export */ });
+/* harmony import */ var _sequence__WEBPACK_IMPORTED_MODULE_0__ = __webpack_require__(/*! ./sequence */ "./public/js/sequence.js");
+/* harmony import */ var react__WEBPACK_IMPORTED_MODULE_1__ = __webpack_require__(/*! react */ "./node_modules/react/index.js");
+/* harmony import */ var react__WEBPACK_IMPORTED_MODULE_1___default = /*#__PURE__*/__webpack_require__.n(react__WEBPACK_IMPORTED_MODULE_1__);
+/* harmony import */ var underscore__WEBPACK_IMPORTED_MODULE_2__ = __webpack_require__(/*! underscore */ "./node_modules/underscore/modules/index-all.js");
+/* harmony import */ var react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__ = __webpack_require__(/*! react/jsx-runtime */ "./node_modules/react/jsx-runtime.js");
+function _typeof(o) { "@babel/helpers - typeof"; return _typeof = "function" == typeof Symbol && "symbol" == typeof Symbol.iterator ? function (o) { return typeof o; } : function (o) { return o && "function" == typeof Symbol && o.constructor === Symbol && o !== Symbol.prototype ? "symbol" : typeof o; }, _typeof(o); }
+function _regeneratorRuntime() { "use strict"; /*! regenerator-runtime -- Copyright (c) 2014-present, Facebook, Inc. -- license (MIT): https://github.com/facebook/regenerator/blob/main/LICENSE */ _regeneratorRuntime = function _regeneratorRuntime() { return e; }; var t, e = {}, r = Object.prototype, n = r.hasOwnProperty, o = Object.defineProperty || function (t, e, r) { t[e] = r.value; }, i = "function" == typeof Symbol ? Symbol : {}, a = i.iterator || "@@iterator", c = i.asyncIterator || "@@asyncIterator", u = i.toStringTag || "@@toStringTag"; function define(t, e, r) { return Object.defineProperty(t, e, { value: r, enumerable: !0, configurable: !0, writable: !0 }), t[e]; } try { define({}, ""); } catch (t) { define = function define(t, e, r) { return t[e] = r; }; } function wrap(t, e, r, n) { var i = e && e.prototype instanceof Generator ? e : Generator, a = Object.create(i.prototype), c = new Context(n || []); return o(a, "_invoke", { value: makeInvokeMethod(t, r, c) }), a; } function tryCatch(t, e, r) { try { return { type: "normal", arg: t.call(e, r) }; } catch (t) { return { type: "throw", arg: t }; } } e.wrap = wrap; var h = "suspendedStart", l = "suspendedYield", f = "executing", s = "completed", y = {}; function Generator() {} function GeneratorFunction() {} function GeneratorFunctionPrototype() {} var p = {}; define(p, a, function () { return this; }); var d = Object.getPrototypeOf, v = d && d(d(values([]))); v && v !== r && n.call(v, a) && (p = v); var g = GeneratorFunctionPrototype.prototype = Generator.prototype = Object.create(p); function defineIteratorMethods(t) { ["next", "throw", "return"].forEach(function (e) { define(t, e, function (t) { return this._invoke(e, t); }); }); } function AsyncIterator(t, e) { function invoke(r, o, i, a) { var c = tryCatch(t[r], t, o); if ("throw" !== c.type) { var u = c.arg, h = u.value; return h && "object" == _typeof(h) && n.call(h, "__await") ? e.resolve(h.__await).then(function (t) { invoke("next", t, i, a); }, function (t) { invoke("throw", t, i, a); }) : e.resolve(h).then(function (t) { u.value = t, i(u); }, function (t) { return invoke("throw", t, i, a); }); } a(c.arg); } var r; o(this, "_invoke", { value: function value(t, n) { function callInvokeWithMethodAndArg() { return new e(function (e, r) { invoke(t, n, e, r); }); } return r = r ? r.then(callInvokeWithMethodAndArg, callInvokeWithMethodAndArg) : callInvokeWithMethodAndArg(); } }); } function makeInvokeMethod(e, r, n) { var o = h; return function (i, a) { if (o === f) throw Error("Generator is already running"); if (o === s) { if ("throw" === i) throw a; return { value: t, done: !0 }; } for (n.method = i, n.arg = a;;) { var c = n.delegate; if (c) { var u = maybeInvokeDelegate(c, n); if (u) { if (u === y) continue; return u; } } if ("next" === n.method) n.sent = n._sent = n.arg;else if ("throw" === n.method) { if (o === h) throw o = s, n.arg; n.dispatchException(n.arg); } else "return" === n.method && n.abrupt("return", n.arg); o = f; var p = tryCatch(e, r, n); if ("normal" === p.type) { if (o = n.done ? s : l, p.arg === y) continue; return { value: p.arg, done: n.done }; } "throw" === p.type && (o = s, n.method = "throw", n.arg = p.arg); } }; } function maybeInvokeDelegate(e, r) { var n = r.method, o = e.iterator[n]; if (o === t) return r.delegate = null, "throw" === n && e.iterator["return"] && (r.method = "return", r.arg = t, maybeInvokeDelegate(e, r), "throw" === r.method) || "return" !== n && (r.method = "throw", r.arg = new TypeError("The iterator does not provide a '" + n + "' method")), y; var i = tryCatch(o, e.iterator, r.arg); if ("throw" === i.type) return r.method = "throw", r.arg = i.arg, r.delegate = null, y; var a = i.arg; return a ? a.done ? (r[e.resultName] = a.value, r.next = e.nextLoc, "return" !== r.method && (r.method = "next", r.arg = t), r.delegate = null, y) : a : (r.method = "throw", r.arg = new TypeError("iterator result is not an object"), r.delegate = null, y); } function pushTryEntry(t) { var e = { tryLoc: t[0] }; 1 in t && (e.catchLoc = t[1]), 2 in t && (e.finallyLoc = t[2], e.afterLoc = t[3]), this.tryEntries.push(e); } function resetTryEntry(t) { var e = t.completion || {}; e.type = "normal", delete e.arg, t.completion = e; } function Context(t) { this.tryEntries = [{ tryLoc: "root" }], t.forEach(pushTryEntry, this), this.reset(!0); } function values(e) { if (e || "" === e) { var r = e[a]; if (r) return r.call(e); if ("function" == typeof e.next) return e; if (!isNaN(e.length)) { var o = -1, i = function next() { for (; ++o < e.length;) if (n.call(e, o)) return next.value = e[o], next.done = !1, next; return next.value = t, next.done = !0, next; }; return i.next = i; } } throw new TypeError(_typeof(e) + " is not iterable"); } return GeneratorFunction.prototype = GeneratorFunctionPrototype, o(g, "constructor", { value: GeneratorFunctionPrototype, configurable: !0 }), o(GeneratorFunctionPrototype, "constructor", { value: GeneratorFunction, configurable: !0 }), GeneratorFunction.displayName = define(GeneratorFunctionPrototype, u, "GeneratorFunction"), e.isGeneratorFunction = function (t) { var e = "function" == typeof t && t.constructor; return !!e && (e === GeneratorFunction || "GeneratorFunction" === (e.displayName || e.name)); }, e.mark = function (t) { return Object.setPrototypeOf ? Object.setPrototypeOf(t, GeneratorFunctionPrototype) : (t.__proto__ = GeneratorFunctionPrototype, define(t, u, "GeneratorFunction")), t.prototype = Object.create(g), t; }, e.awrap = function (t) { return { __await: t }; }, defineIteratorMethods(AsyncIterator.prototype), define(AsyncIterator.prototype, c, function () { return this; }), e.AsyncIterator = AsyncIterator, e.async = function (t, r, n, o, i) { void 0 === i && (i = Promise); var a = new AsyncIterator(wrap(t, r, n, o), i); return e.isGeneratorFunction(r) ? a : a.next().then(function (t) { return t.done ? t.value : a.next(); }); }, defineIteratorMethods(g), define(g, u, "Generator"), define(g, a, function () { return this; }), define(g, "toString", function () { return "[object Generator]"; }), e.keys = function (t) { var e = Object(t), r = []; for (var n in e) r.push(n); return r.reverse(), function next() { for (; r.length;) { var t = r.pop(); if (t in e) return next.value = t, next.done = !1, next; } return next.done = !0, next; }; }, e.values = values, Context.prototype = { constructor: Context, reset: function reset(e) { if (this.prev = 0, this.next = 0, this.sent = this._sent = t, this.done = !1, this.delegate = null, this.method = "next", this.arg = t, this.tryEntries.forEach(resetTryEntry), !e) for (var r in this) "t" === r.charAt(0) && n.call(this, r) && !isNaN(+r.slice(1)) && (this[r] = t); }, stop: function stop() { this.done = !0; var t = this.tryEntries[0].completion; if ("throw" === t.type) throw t.arg; return this.rval; }, dispatchException: function dispatchException(e) { if (this.done) throw e; var r = this; function handle(n, o) { return a.type = "throw", a.arg = e, r.next = n, o && (r.method = "next", r.arg = t), !!o; } for (var o = this.tryEntries.length - 1; o >= 0; --o) { var i = this.tryEntries[o], a = i.completion; if ("root" === i.tryLoc) return handle("end"); if (i.tryLoc <= this.prev) { var c = n.call(i, "catchLoc"), u = n.call(i, "finallyLoc"); if (c && u) { if (this.prev < i.catchLoc) return handle(i.catchLoc, !0); if (this.prev < i.finallyLoc) return handle(i.finallyLoc); } else if (c) { if (this.prev < i.catchLoc) return handle(i.catchLoc, !0); } else { if (!u) throw Error("try statement without catch or finally"); if (this.prev < i.finallyLoc) return handle(i.finallyLoc); } } } }, abrupt: function abrupt(t, e) { for (var r = this.tryEntries.length - 1; r >= 0; --r) { var o = this.tryEntries[r]; if (o.tryLoc <= this.prev && n.call(o, "finallyLoc") && this.prev < o.finallyLoc) { var i = o; break; } } i && ("break" === t || "continue" === t) && i.tryLoc <= e && e <= i.finallyLoc && (i = null); var a = i ? i.completion : {}; return a.type = t, a.arg = e, i ? (this.method = "next", this.next = i.finallyLoc, y) : this.complete(a); }, complete: function complete(t, e) { if ("throw" === t.type) throw t.arg; return "break" === t.type || "continue" === t.type ? this.next = t.arg : "return" === t.type ? (this.rval = this.arg = t.arg, this.method = "return", this.next = "end") : "normal" === t.type && e && (this.next = e), y; }, finish: function finish(t) { for (var e = this.tryEntries.length - 1; e >= 0; --e) { var r = this.tryEntries[e]; if (r.finallyLoc === t) return this.complete(r.completion, r.afterLoc), resetTryEntry(r), y; } }, "catch": function _catch(t) { for (var e = this.tryEntries.length - 1; e >= 0; --e) { var r = this.tryEntries[e]; if (r.tryLoc === t) { var n = r.completion; if ("throw" === n.type) { var o = n.arg; resetTryEntry(r); } return o; } } throw Error("illegal catch attempt"); }, delegateYield: function delegateYield(e, r, n) { return this.delegate = { iterator: values(e), resultName: r, nextLoc: n }, "next" === this.method && (this.arg = t), y; } }, e; }
+function asyncGeneratorStep(n, t, e, r, o, a, c) { try { var i = n[a](c), u = i.value; } catch (n) { return void e(n); } i.done ? t(u) : Promise.resolve(u).then(r, o); }
+function _asyncToGenerator(n) { return function () { var t = this, e = arguments; return new Promise(function (r, o) { var a = n.apply(t, e); function _next(n) { asyncGeneratorStep(a, r, o, _next, _throw, "next", n); } function _throw(n) { asyncGeneratorStep(a, r, o, _next, _throw, "throw", n); } _next(void 0); }); }; }
+function _classCallCheck(a, n) { if (!(a instanceof n)) throw new TypeError("Cannot call a class as a function"); }
+function _defineProperties(e, r) { for (var t = 0; t < r.length; t++) { var o = r[t]; o.enumerable = o.enumerable || !1, o.configurable = !0, "value" in o && (o.writable = !0), Object.defineProperty(e, _toPropertyKey(o.key), o); } }
+function _createClass(e, r, t) { return r && _defineProperties(e.prototype, r), t && _defineProperties(e, t), Object.defineProperty(e, "prototype", { writable: !1 }), e; }
+function _callSuper(t, o, e) { return o = _getPrototypeOf(o), _possibleConstructorReturn(t, _isNativeReflectConstruct() ? Reflect.construct(o, e || [], _getPrototypeOf(t).constructor) : o.apply(t, e)); }
+function _possibleConstructorReturn(t, e) { if (e && ("object" == _typeof(e) || "function" == typeof e)) return e; if (void 0 !== e) throw new TypeError("Derived constructors may only return object or undefined"); return _assertThisInitialized(t); }
+function _assertThisInitialized(e) { if (void 0 === e) throw new ReferenceError("this hasn't been initialised - super() hasn't been called"); return e; }
+function _isNativeReflectConstruct() { try { var t = !Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); } catch (t) {} return (_isNativeReflectConstruct = function _isNativeReflectConstruct() { return !!t; })(); }
+function _getPrototypeOf(t) { return _getPrototypeOf = Object.setPrototypeOf ? Object.getPrototypeOf.bind() : function (t) { return t.__proto__ || Object.getPrototypeOf(t); }, _getPrototypeOf(t); }
+function _inherits(t, e) { if ("function" != typeof e && null !== e) throw new TypeError("Super expression must either be null or a function"); t.prototype = Object.create(e && e.prototype, { constructor: { value: t, writable: !0, configurable: !0 } }), Object.defineProperty(t, "prototype", { writable: !1 }), e && _setPrototypeOf(t, e); }
+function _setPrototypeOf(t, e) { return _setPrototypeOf = Object.setPrototypeOf ? Object.setPrototypeOf.bind() : function (t, e) { return t.__proto__ = e, t; }, _setPrototypeOf(t, e); }
+function _defineProperty(e, r, t) { return (r = _toPropertyKey(r)) in e ? Object.defineProperty(e, r, { value: t, enumerable: !0, configurable: !0, writable: !0 }) : e[r] = t, e; }
+function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == _typeof(i) ? i : i + ""; }
+function _toPrimitive(t, r) { if ("object" != _typeof(t) || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != _typeof(i)) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
+
+
+
+
+/**
+ * Takes sequence accession as props, fetches the sequence from the server, and
+ * displays it in a modal.
+ */
+
+var SequenceModal = /*#__PURE__*/function (_React$Component) {
+ function SequenceModal(props) {
+ var _this;
+ _classCallCheck(this, SequenceModal);
+ _this = _callSuper(this, SequenceModal, [props]);
+ /**
+ * Shows sequence viewer.
+ */
+ _defineProperty(_this, "show", function (url) {
+ var _this$modalRef$curren;
+ (_this$modalRef$curren = _this.modalRef.current) === null || _this$modalRef$curren === void 0 || _this$modalRef$curren.showModal();
+ _this.setState({
+ requestCompleted: false
+ });
+ _this.loadJSON(url);
+ });
+ /**
+ * Hide sequence viewer.
+ */
+ _defineProperty(_this, "hide", function () {
+ var _this$modalRef$curren2;
+ (_this$modalRef$curren2 = _this.modalRef.current) === null || _this$modalRef$curren2 === void 0 || _this$modalRef$curren2.close();
+ });
+ _this.state = {
+ error_msgs: [],
+ sequences: [],
+ requestCompleted: false,
+ isModalVisible: false
+ };
+ _this.modalRef = /*#__PURE__*/(0,react__WEBPACK_IMPORTED_MODULE_1__.createRef)();
+ return _this;
+ }
+
+ // Lifecycle methods. //
+ _inherits(SequenceModal, _React$Component);
+ return _createClass(SequenceModal, [{
+ key: "render",
+ value: function render() {
+ var _this$state = this.state,
+ isModalVisible = _this$state.isModalVisible,
+ requestCompleted = _this$state.requestCompleted;
+ return /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsx)("div", {
+ className: "relative sequence-viewer-wrap",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsx)("dialog", {
+ ref: this.modalRef,
+ className: "sequence-viewer fixed p-4 w-full max-w-2xl bg-transparent focus:outline-none overflow-visible z-50",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsxs)("div", {
+ className: "relative flex flex-col rounded-lg bg-white shadow",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsxs)("div", {
+ className: "flex items-start justify-between rounded-t border-b p-5",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsx)("h3", {
+ className: "text-xl font-medium text-gray-900",
+ children: "View sequence"
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsx)("button", {
+ className: "sequence-viewer-close ml-auto inline-flex items-center rounded-lg bg-transparent p-1.5 text-gray-400 hover:bg-gray-200",
+ onClick: this.hide,
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsx)("i", {
+ className: "fa-solid fa-xmark hover:text-black"
+ })
+ })]
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsx)("div", {
+ className: "sequence-viewer-content max-h-[80vh] overflow-y-scroll",
+ children: requestCompleted && this.resultsJSX() || this.loadingJSX()
+ })]
+ })
+ })
+ });
+ }
+ }, {
+ key: "loadJSON",
+ value: (
+ /**
+ * Loads sequence using AJAX and updates modal state.
+ */
+ function () {
+ var _loadJSON = _asyncToGenerator( /*#__PURE__*/_regeneratorRuntime().mark(function _callee(url) {
+ var response, data;
+ return _regeneratorRuntime().wrap(function _callee$(_context) {
+ while (1) switch (_context.prev = _context.next) {
+ case 0:
+ _context.prev = 0;
+ _context.next = 3;
+ return fetch(url);
+ case 3:
+ response = _context.sent;
+ _context.next = 6;
+ return response.json();
+ case 6:
+ data = _context.sent;
+ this.setState({
+ sequences: data.sequences,
+ error_msgs: data.error_msgs,
+ requestCompleted: true
+ });
+ _context.next = 15;
+ break;
+ case 10:
+ _context.prev = 10;
+ _context.t0 = _context["catch"](0);
+ console.log('Error fetching sequence:', _context.t0);
+ this.hide();
+ this.props.showErrorModal(_context.t0);
+ case 15:
+ case "end":
+ return _context.stop();
+ }
+ }, _callee, this, [[0, 10]]);
+ }));
+ function loadJSON(_x) {
+ return _loadJSON.apply(this, arguments);
+ }
+ return loadJSON;
+ }())
+ }, {
+ key: "resultsJSX",
+ value: function resultsJSX() {
+ return /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsxs)("div", {
+ className: "pt-2 px-6 pb-6 mt-2",
+ children: [this.state.error_msgs.map(function (error_msg, index) {
+ return /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsxs)("div", {
+ className: "fastan",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsx)("div", {
+ className: "section-header border-b border-seqorange pl-px table mb-0 w-full pb-2",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsx)("h4", {
+ className: "text-sm table-cell",
+ children: error_msg[0]
+ })
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsx)("div", {
+ className: "pt-0 px-0 pb-px",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsx)("pre", {
+ className: "m-0 p-0 rounded-none border-0 bg-inherit whitespace-pre-wrap break-keep",
+ children: error_msg[1]
+ })
+ })]
+ }, "error-message-".concat(index));
+ }), this.state.sequences.map(function (sequence, index) {
+ return /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsx)(SequenceViewer, {
+ sequence: sequence
+ }, "sequence-viewer-".concat(index));
+ })]
+ });
+ }
+ }, {
+ key: "loadingJSX",
+ value: function loadingJSX() {
+ return /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsx)("div", {
+ className: "my-4 text-center",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsx)("i", {
+ className: "fa fa-spinner fa-3x fa-spin"
+ })
+ });
+ }
+ }]);
+}((react__WEBPACK_IMPORTED_MODULE_1___default().Component));
+
+var SequenceViewer = /*#__PURE__*/function (_React$Component2) {
+ function SequenceViewer() {
+ _classCallCheck(this, SequenceViewer);
+ return _callSuper(this, SequenceViewer, arguments);
+ }
+ _inherits(SequenceViewer, _React$Component2);
+ return _createClass(SequenceViewer, [{
+ key: "render",
+ value: function render() {
+ this.widgetID = this.widgetClass + "-" + new Date().getUTCMilliseconds();
+ return /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsxs)("div", {
+ className: "fastan",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsx)("div", {
+ className: "section-header border-b border-seqorange pl-px table mb-0 w-full pb-2",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsxs)("h4", {
+ className: "text-sm table-cell",
+ children: [this.props.sequence.id, /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsxs)("small", {
+ className: "text-inherit",
+ children: ["\xA0 ", this.props.sequence.title]
+ })]
+ })
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsx)("div", {
+ className: "fastan-content relative pt-0 px-0 pb-px",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_3__.jsx)("div", {
+ className: this.widgetClass,
+ id: this.widgetID
+ })
+ })]
+ });
+ }
+ }, {
+ key: "componentDidMount",
+ value: function componentDidMount() {
+ // attach BioJS sequence viewer
+ var widget = new Sequence({
+ sequence: this.props.sequence.value,
+ target: this.widgetID,
+ format: "PRIDE",
+ columns: {
+ size: 40,
+ spacedEach: 0
+ },
+ formatOptions: {
+ title: false,
+ footer: false
+ }
+ });
+ setTimeout(function () {
+ requestAnimationFrame(function () {
+ widget.hideFormatSelector();
+ }); // ensure React is done painting the DOM of the element before calling a function on it.
+ });
+ }
+ }], [{
+ key: "widgetClass",
+ value:
+ /**
+ * The CSS class name that will be assigned to the widget container. ID
+ * assigned to the widget container is derived from the same.
+ */
+ function widgetClass() {
+ return "biojs-vis-sequence";
+ }
+ }]);
+}((react__WEBPACK_IMPORTED_MODULE_1___default().Component));
+
+/***/ }),
+
+/***/ "./public/js/share_url.js":
+/*!********************************!*\
+ !*** ./public/js/share_url.js ***!
+ \********************************/
+/***/ ((__unused_webpack_module, __webpack_exports__, __webpack_require__) => {
+
+"use strict";
+__webpack_require__.r(__webpack_exports__);
+/* harmony export */ __webpack_require__.d(__webpack_exports__, {
+/* harmony export */ "default": () => (__WEBPACK_DEFAULT_EXPORT__)
+/* harmony export */ });
+/* harmony import */ var react__WEBPACK_IMPORTED_MODULE_0__ = __webpack_require__(/*! react */ "./node_modules/react/index.js");
+/* harmony import */ var react__WEBPACK_IMPORTED_MODULE_0___default = /*#__PURE__*/__webpack_require__.n(react__WEBPACK_IMPORTED_MODULE_0__);
+/* harmony import */ var _mailto__WEBPACK_IMPORTED_MODULE_1__ = __webpack_require__(/*! ./mailto */ "./public/js/mailto.js");
+/* harmony import */ var react_jsx_runtime__WEBPACK_IMPORTED_MODULE_2__ = __webpack_require__(/*! react/jsx-runtime */ "./node_modules/react/jsx-runtime.js");
+function _slicedToArray(r, e) { return _arrayWithHoles(r) || _iterableToArrayLimit(r, e) || _unsupportedIterableToArray(r, e) || _nonIterableRest(); }
+function _nonIterableRest() { throw new TypeError("Invalid attempt to destructure non-iterable instance.\nIn order to be iterable, non-array objects must have a [Symbol.iterator]() method."); }
+function _unsupportedIterableToArray(r, a) { if (r) { if ("string" == typeof r) return _arrayLikeToArray(r, a); var t = {}.toString.call(r).slice(8, -1); return "Object" === t && r.constructor && (t = r.constructor.name), "Map" === t || "Set" === t ? Array.from(r) : "Arguments" === t || /^(?:Ui|I)nt(?:8|16|32)(?:Clamped)?Array$/.test(t) ? _arrayLikeToArray(r, a) : void 0; } }
+function _arrayLikeToArray(r, a) { (null == a || a > r.length) && (a = r.length); for (var e = 0, n = Array(a); e < a; e++) n[e] = r[e]; return n; }
+function _iterableToArrayLimit(r, l) { var t = null == r ? null : "undefined" != typeof Symbol && r[Symbol.iterator] || r["@@iterator"]; if (null != t) { var e, n, i, u, a = [], f = !0, o = !1; try { if (i = (t = t.call(r)).next, 0 === l) { if (Object(t) !== t) return; f = !1; } else for (; !(f = (e = i.call(t)).done) && (a.push(e.value), a.length !== l); f = !0); } catch (r) { o = !0, n = r; } finally { try { if (!f && null != t["return"] && (u = t["return"](), Object(u) !== u)) return; } finally { if (o) throw n; } } return a; } }
+function _arrayWithHoles(r) { if (Array.isArray(r)) return r; }
+
+
+
+var ShareURLComponent = function ShareURLComponent(_ref) {
+ var querydb = _ref.querydb,
+ program = _ref.program,
+ queryLength = _ref.queryLength,
+ url = _ref.url;
+ var _useState = (0,react__WEBPACK_IMPORTED_MODULE_0__.useState)(false),
+ _useState2 = _slicedToArray(_useState, 2),
+ copied = _useState2[0],
+ setCopied = _useState2[1];
+ var copyToClipboard = function copyToClipboard() {
+ navigator.clipboard.writeText(url);
+ setCopied(true);
+ };
+ return /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_2__.jsxs)("div", {
+ className: "px-6 share-url-component",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_2__.jsx)("input", {
+ className: "w-full mb-3 pt-3",
+ name: "shareableUrl",
+ type: "text",
+ value: url,
+ readOnly: true
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_2__.jsxs)("div", {
+ className: "py-4 flex justify-between items-center",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_2__.jsx)("button", {
+ className: "py-2 px-3 border border-transparent rounded-md shadow-sm text-white bg-seqblue hover:bg-seqorange focus:outline-none focus:ring-2 focus:ring-offset-2 focus:ring-seqorange",
+ onClick: copyToClipboard,
+ children: copied ? 'Copied!' : 'Copy to Clipboard'
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_2__.jsx)("a", {
+ href: (0,_mailto__WEBPACK_IMPORTED_MODULE_1__["default"])(querydb, program, queryLength, url, true),
+ children: "Share via email"
+ })]
+ })]
+ });
+};
+/* harmony default export */ const __WEBPACK_DEFAULT_EXPORT__ = (ShareURLComponent);
+
+/***/ }),
+
+/***/ "./public/js/sidebar.js":
+/*!******************************!*\
+ !*** ./public/js/sidebar.js ***!
+ \******************************/
+/***/ ((__unused_webpack_module, __webpack_exports__, __webpack_require__) => {
+
+"use strict";
+__webpack_require__.r(__webpack_exports__);
+/* harmony export */ __webpack_require__.d(__webpack_exports__, {
+/* harmony export */ "default": () => (/* binding */ _default)
+/* harmony export */ });
+/* harmony import */ var react__WEBPACK_IMPORTED_MODULE_0__ = __webpack_require__(/*! react */ "./node_modules/react/index.js");
+/* harmony import */ var react__WEBPACK_IMPORTED_MODULE_0___default = /*#__PURE__*/__webpack_require__.n(react__WEBPACK_IMPORTED_MODULE_0__);
+/* harmony import */ var underscore__WEBPACK_IMPORTED_MODULE_1__ = __webpack_require__(/*! underscore */ "./node_modules/underscore/modules/index-all.js");
+/* harmony import */ var _download_fasta__WEBPACK_IMPORTED_MODULE_2__ = __webpack_require__(/*! ./download_fasta */ "./public/js/download_fasta.js");
+/* harmony import */ var _mailto__WEBPACK_IMPORTED_MODULE_3__ = __webpack_require__(/*! ./mailto */ "./public/js/mailto.js");
+/* harmony import */ var _cloud_share_modal__WEBPACK_IMPORTED_MODULE_4__ = __webpack_require__(/*! ./cloud_share_modal */ "./public/js/cloud_share_modal.js");
+/* harmony import */ var download_links__WEBPACK_IMPORTED_MODULE_5__ = __webpack_require__(/*! download_links */ "./public/js/null_plugins/download_links.js");
+/* harmony import */ var react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__ = __webpack_require__(/*! react/jsx-runtime */ "./node_modules/react/jsx-runtime.js");
+/* provided dependency */ var $ = __webpack_require__(/*! jquery */ "./node_modules/jquery/dist/jquery.js");
+function _typeof(o) { "@babel/helpers - typeof"; return _typeof = "function" == typeof Symbol && "symbol" == typeof Symbol.iterator ? function (o) { return typeof o; } : function (o) { return o && "function" == typeof Symbol && o.constructor === Symbol && o !== Symbol.prototype ? "symbol" : typeof o; }, _typeof(o); }
+function _classCallCheck(a, n) { if (!(a instanceof n)) throw new TypeError("Cannot call a class as a function"); }
+function _defineProperties(e, r) { for (var t = 0; t < r.length; t++) { var o = r[t]; o.enumerable = o.enumerable || !1, o.configurable = !0, "value" in o && (o.writable = !0), Object.defineProperty(e, _toPropertyKey(o.key), o); } }
+function _createClass(e, r, t) { return r && _defineProperties(e.prototype, r), t && _defineProperties(e, t), Object.defineProperty(e, "prototype", { writable: !1 }), e; }
+function _toPropertyKey(t) { var i = _toPrimitive(t, "string"); return "symbol" == _typeof(i) ? i : i + ""; }
+function _toPrimitive(t, r) { if ("object" != _typeof(t) || !t) return t; var e = t[Symbol.toPrimitive]; if (void 0 !== e) { var i = e.call(t, r || "default"); if ("object" != _typeof(i)) return i; throw new TypeError("@@toPrimitive must return a primitive value."); } return ("string" === r ? String : Number)(t); }
+function _callSuper(t, o, e) { return o = _getPrototypeOf(o), _possibleConstructorReturn(t, _isNativeReflectConstruct() ? Reflect.construct(o, e || [], _getPrototypeOf(t).constructor) : o.apply(t, e)); }
+function _possibleConstructorReturn(t, e) { if (e && ("object" == _typeof(e) || "function" == typeof e)) return e; if (void 0 !== e) throw new TypeError("Derived constructors may only return object or undefined"); return _assertThisInitialized(t); }
+function _assertThisInitialized(e) { if (void 0 === e) throw new ReferenceError("this hasn't been initialised - super() hasn't been called"); return e; }
+function _isNativeReflectConstruct() { try { var t = !Boolean.prototype.valueOf.call(Reflect.construct(Boolean, [], function () {})); } catch (t) {} return (_isNativeReflectConstruct = function _isNativeReflectConstruct() { return !!t; })(); }
+function _getPrototypeOf(t) { return _getPrototypeOf = Object.setPrototypeOf ? Object.getPrototypeOf.bind() : function (t) { return t.__proto__ || Object.getPrototypeOf(t); }, _getPrototypeOf(t); }
+function _inherits(t, e) { if ("function" != typeof e && null !== e) throw new TypeError("Super expression must either be null or a function"); t.prototype = Object.create(e && e.prototype, { constructor: { value: t, writable: !0, configurable: !0 } }), Object.defineProperty(t, "prototype", { writable: !1 }), e && _setPrototypeOf(t, e); }
+function _setPrototypeOf(t, e) { return _setPrototypeOf = Object.setPrototypeOf ? Object.setPrototypeOf.bind() : function (t, e) { return t.__proto__ = e, t; }, _setPrototypeOf(t, e); }
+
+
+
+
+
+
+/**
+ * checks whether code is being run by jest
+ */
+// eslint-disable-next-line no-undef
+
+var isTestMode = function isTestMode() {
+ return ({}).JEST_WORKER_ID !== undefined || "development" === 'test';
+};
+/**
+ * Renders links for downloading hit information in different formats.
+ * Renders links for navigating to each query.
+ */
+var _default = /*#__PURE__*/function (_Component) {
+ function _default(props) {
+ var _this;
+ _classCallCheck(this, _default);
+ _this = _callSuper(this, _default, [props]);
+ _this.downloadFastaOfAll = _this.downloadFastaOfAll.bind(_this);
+ _this.downloadFastaOfSelected = _this.downloadFastaOfSelected.bind(_this);
+ _this.topPanelJSX = _this.topPanelJSX.bind(_this);
+ _this.summaryString = _this.summaryString.bind(_this);
+ _this.indexJSX = _this.indexJSX.bind(_this);
+ _this.downloadsPanelJSX = _this.downloadsPanelJSX.bind(_this);
+ _this.handleQueryIndexChange = _this.handleQueryIndexChange.bind(_this);
+ _this.isElementInViewPort = _this.isElementInViewPort.bind(_this);
+ _this.setVisibleQueryIndex = _this.setVisibleQueryIndex.bind(_this);
+ _this.debounceScrolling = _this.debounceScrolling.bind(_this);
+ _this.scrollListener = _this.scrollListener.bind(_this);
+ _this.copyURL = _this.copyURL.bind(_this);
+ _this.shareCloudInit = _this.shareCloudInit.bind(_this);
+ _this.sharingPanelJSX = _this.sharingPanelJSX.bind(_this);
+ _this.cloudShareModal = /*#__PURE__*/react__WEBPACK_IMPORTED_MODULE_0___default().createRef();
+ _this.timeout = null;
+ _this.queryElems = [];
+ _this.state = {
+ queryIndex: 1
+ };
+ return _this;
+ }
+ _inherits(_default, _Component);
+ return _createClass(_default, [{
+ key: "componentDidMount",
+ value: function componentDidMount() {
+ //keep track of the current queryIndex so it doesn't get lost on page reload
+ var urlMatch = window.location.href.match(/#Query_(\d+)/);
+ if (urlMatch && urlMatch.length > 1) {
+ var queryNumber = +urlMatch[1];
+ var index = this.props.data.queries.findIndex(function (query) {
+ return query.number === queryNumber;
+ });
+ this.setState({
+ queryIndex: index + 1
+ });
+ }
+ window.addEventListener('scroll', this.scrollListener);
+ $('a[href^="#Query_"]').on('click', this.animateAnchorElements);
+ }
+ }, {
+ key: "componentWillUnmount",
+ value: function componentWillUnmount() {
+ window.removeEventListener('scroll', this.scrollListener);
+ }
+ }, {
+ key: "componentDidUpdate",
+ value: function componentDidUpdate(prevProps) {
+ if (this.props.allQueriesLoaded && !prevProps.allQueriesLoaded) {
+ /**
+ * storing all query elements in this variable once they all become available so we don't have to fetch them all over again
+ */
+ this.queryElems = Array.from(document.querySelectorAll('.resultn'));
+ }
+ }
+
+ /**
+ * to avoid unnecessary computations, we debounce the scroll listener so it only fires after user has stopped scrolling for some milliseconds
+ */
+ }, {
+ key: "scrollListener",
+ value: function scrollListener() {
+ this.debounceScrolling(this.setVisibleQueryIndex, 500);
+ }
+ }, {
+ key: "debounceScrolling",
+ value: function debounceScrolling(callback, timer) {
+ if (this.timeout) {
+ clearTimeout(this.timeout);
+ }
+ this.timeout = setTimeout(callback, timer);
+ }
+
+ /**
+ * This method makes the page aware of what query is visible so that clicking previous / next button at any point
+ * navigates to the proper query
+ */
+ }, {
+ key: "setVisibleQueryIndex",
+ value: function setVisibleQueryIndex() {
+ var queryElems = this.queryElems.length ? this.queryElems : Array.from(document.querySelectorAll('.resultn'));
+ var hits = Array.from(document.querySelectorAll('.hit[id^=Query_]'));
+ // get the first visible element and marks it as the current query
+ var topmostEl = queryElems.find(this.isElementInViewPort) || hits.find(this.isElementInViewPort);
+ if (topmostEl) {
+ var queryIndex = Number(topmostEl.id.match(/Query_(\d+)/)[1]);
+ var hash = "#Query_".concat(queryIndex);
+ // if we can guarantee that the browser can handle change in url hash without the page jumping,
+ // then we update the url hash after scroll. else, hash is only updated on click of next or prev button
+ if (window.history.pushState) {
+ window.history.pushState(null, null, hash);
+ }
+ this.setState({
+ queryIndex: queryIndex
+ });
+ }
+ }
+ }, {
+ key: "animateAnchorElements",
+ value: function animateAnchorElements(e) {
+ // allow normal behavior in test mode to prevent warnings or errors from jquery
+ if (isTestMode()) return;
+ e.preventDefault();
+ $('html, body').animate({
+ scrollTop: $(this.hash).offset().top
+ }, 300);
+ if (window.history.pushState) {
+ window.history.pushState(null, null, this.hash);
+ } else {
+ window.location.hash = this.hash;
+ }
+ }
+ }, {
+ key: "isElementInViewPort",
+ value: function isElementInViewPort(elem) {
+ var _elem$getBoundingClie = elem.getBoundingClientRect(),
+ top = _elem$getBoundingClie.top,
+ left = _elem$getBoundingClie.left,
+ right = _elem$getBoundingClie.right,
+ bottom = _elem$getBoundingClie.bottom;
+ return top >= 0 && left >= 0 && bottom <= (window.innerHeight || document.documentElement.clientHeight) && right <= (window.innerWidth || document.documentElement.clientWidth);
+ }
+ /**
+ * Clear sessionStorage - useful to initiate a new search in the same tab.
+ * Passing sessionStorage.clear directly as onclick callback didn't work
+ * (on macOS Chrome).
+ */
+ }, {
+ key: "clearSession",
+ value: function clearSession() {
+ sessionStorage.clear();
+ }
+ /**
+ *
+ * handle next and previous query button clicks
+ */
+ }, {
+ key: "handleQueryIndexChange",
+ value: function handleQueryIndexChange(nextQuery) {
+ if (nextQuery < 1 || nextQuery > this.props.data.queries.length) return;
+ var anchorEl = document.createElement('a');
+ //indexing at [nextQuery - 1] because array is 0-indexed
+ anchorEl.setAttribute('href', '#Query_' + this.props.data.queries[nextQuery - 1].number);
+ anchorEl.setAttribute('hidden', true);
+ document.body.appendChild(anchorEl);
+ // add smooth scrolling animation with jquery
+ $(anchorEl).on('click', this.animateAnchorElements);
+ anchorEl.click();
+ document.body.removeChild(anchorEl);
+ this.setState({
+ queryIndex: nextQuery
+ });
+ }
+ /**
+ * Event-handler for downloading fasta of all hits.
+ */
+ }, {
+ key: "downloadFastaOfAll",
+ value: function downloadFastaOfAll() {
+ var sequence_ids = [];
+ this.props.data.queries.forEach(function (query) {
+ return query.hits.forEach(function (hit) {
+ return sequence_ids.push(hit.id);
+ });
+ });
+ var database_ids = this.props.data.querydb.map(function (querydb) {
+ return querydb.id;
+ });
+ (0,_download_fasta__WEBPACK_IMPORTED_MODULE_2__["default"])(sequence_ids, database_ids);
+ return false;
+ }
+
+ /**
+ * Handles downloading fasta of selected hits.
+ */
+ }, {
+ key: "downloadFastaOfSelected",
+ value: function downloadFastaOfSelected() {
+ var sequence_ids = $('.hit-links :checkbox:checked').map(function () {
+ return this.value;
+ }).get();
+ if (sequence_ids.length === 0) {
+ return false;
+ }
+ var database_ids = underscore__WEBPACK_IMPORTED_MODULE_1__["default"].map(this.props.data.querydb, underscore__WEBPACK_IMPORTED_MODULE_1__["default"].iteratee('id'));
+ (0,_download_fasta__WEBPACK_IMPORTED_MODULE_2__["default"])(sequence_ids, database_ids);
+ return false;
+ }
+
+ /**
+ * Handles copying the URL into the user's clipboard. Modified from: https://stackoverflow.com/a/49618964/18117380
+ * Hides the 'Copied!' tooltip after 3 seconds
+ */
+ }, {
+ key: "copyURL",
+ value: function copyURL() {
+ var element = document.createElement('input');
+ var url = window.location.href;
+ document.body.appendChild(element);
+ element.value = url;
+ element.select();
+ document.execCommand('copy');
+ document.body.removeChild(element);
+ var tooltip = document.getElementById('tooltip');
+ tooltip.classList.remove('hidden');
+ setTimeout(function () {
+ tooltip.classList.add('hidden');
+ }, 3000);
+ }
+ }, {
+ key: "shareCloudInit",
+ value: function shareCloudInit() {
+ this.cloudShareModal.current.show();
+ }
+ }, {
+ key: "topPanelJSX",
+ value: function topPanelJSX() {
+ var path = location.pathname.split('/');
+ // Get job id.
+ var job_id = path.pop();
+ // Deriving rootURL this way is required for subURI deployments
+ // - we cannot just send to '/'.
+ var rootURL = path.join('/');
+ return /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "sidebar-top-panel",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("div", {
+ className: "pl-px table mb-0 w-full",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("h4", {
+ className: "text-sm font-bold mb-0 mt-0.5",
+ children: this.summaryString()
+ })
+ }), this.props.data.queries.length > 12 && this.queryIndexButtons(), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("a", {
+ href: "".concat(rootURL, "/?job_id=").concat(job_id),
+ className: "text-sm text-seqblue hover:text-seqorange cursor-pointer",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("i", {
+ className: "fa fa-pencil"
+ }), " Edit search"]
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("span", {
+ className: "text-seqorange px-1",
+ children: "|"
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("a", {
+ href: "".concat(rootURL, "/"),
+ onClick: this.clearSession,
+ className: "text-sm text-seqblue hover:text-seqorange cursor-pointer",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("i", {
+ className: "fa-regular fa-file"
+ }), " New search"]
+ })]
+ }), this.props.shouldShowIndex && this.indexJSX()]
+ });
+ }
+ }, {
+ key: "summaryString",
+ value: function summaryString() {
+ var program = this.props.data.program;
+ var numqueries = this.props.data.queries.length;
+ var numquerydb = this.props.data.querydb.length;
+ return program.toUpperCase() + ': ' + numqueries + ' ' + (numqueries > 1 ? 'queries' : 'query') + ', ' + numquerydb + ' ' + (numquerydb > 1 ? 'databases' : 'database');
+ }
+ }, {
+ key: "queryIndexButtons",
+ value: function queryIndexButtons() {
+ var _this2 = this;
+ var buttonStyle = {
+ outline: 'none',
+ border: 'none',
+ background: 'none'
+ };
+ var buttonClasses = 'text-sm text-seqblue hover:text-seqorange hover:bg-gray-200';
+ var handlePreviousBtnClick = function handlePreviousBtnClick() {
+ return _this2.handleQueryIndexChange(_this2.state.queryIndex - 1);
+ };
+ var handleNextBtnClick = function handleNextBtnClick() {
+ return _this2.handleQueryIndexChange(_this2.state.queryIndex + 1);
+ };
+
+ // eslint-disable-next-line no-unused-vars
+ var NavButton = function NavButton(_ref) {
+ var text = _ref.text,
+ onClick = _ref.onClick;
+ return /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("button", {
+ className: buttonClasses,
+ onClick: onClick,
+ style: buttonStyle,
+ children: text
+ });
+ };
+ return /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ style: {
+ display: 'flex',
+ width: '100%',
+ margin: '7px 0'
+ },
+ children: [this.state.queryIndex > 1 && /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)(NavButton, {
+ text: "Previous Query",
+ onClick: handlePreviousBtnClick
+ }), this.state.queryIndex > 1 && this.state.queryIndex < this.props.data.queries.length && /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("span", {
+ className: "text-seqorange px-1",
+ children: "|"
+ }), this.state.queryIndex < this.props.data.queries.length && /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)(NavButton, {
+ onClick: handleNextBtnClick,
+ text: "Next Query"
+ })]
+ });
+ }
+ }, {
+ key: "indexJSX",
+ value: function indexJSX() {
+ return /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("ul", {
+ className: "w-full",
+ children: [" ", underscore__WEBPACK_IMPORTED_MODULE_1__["default"].map(this.props.data.queries, function (query) {
+ return /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("li", {
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("a", {
+ className: "side-nav text-sm text-seqblue hover:text-seqorange focus:text-seqorange active:text-seqorange cursor-pointer hover-bold line-clamp-1 mb-1.5",
+ title: 'Query= ' + query.id + ' ' + query.title,
+ href: '#Query_' + query.number,
+ children: 'Query= ' + query.id
+ })
+ }, 'Side_bar_' + query.id);
+ })]
+ });
+ }
+ }, {
+ key: "downloadsPanelJSX",
+ value: function downloadsPanelJSX() {
+ return /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "downloads",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("div", {
+ className: "pl-px table mb-0 w-full",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("h4", {
+ className: "text-sm font-bold mb-0 mt-2.5",
+ children: "Download FASTA, XML, TSV"
+ })
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("ul", {
+ children: [!(this.props.data.imported_xml || this.props.data.non_parse_seqids) && /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("li", {
+ className: "hover:bg-gray-200 mb-1",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("a", {
+ href: "#",
+ className: "text-sm text-seqblue download-fasta-of-all hover:text-seqorange cursor-pointer py-0.5 px-0.5 ".concat(!this.props.atLeastOneHit && 'disabled'),
+ onClick: this.props.atLeastOneHit ? this.downloadFastaOfAll : function (e) {
+ return e.preventDefault();
+ },
+ children: "FASTA of all hits"
+ })
+ }), !(this.props.data.imported_xml || this.props.data.non_parse_seqids) && /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("li", {
+ className: "mb-1",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("a", {
+ href: "#",
+ className: "flex text-sm download-fasta-of-selected text-seqblue disabled py-0.5 px-0.5",
+ onClick: this.downloadFastaOfSelected,
+ children: ["FASTA of ", /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("span", {
+ className: "font-bold px-0.5"
+ }), " selected hit(s)"]
+ })
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("li", {
+ className: "hover:bg-gray-200 mb-1",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("a", {
+ href: "#",
+ className: "text-sm text-seqblue download-alignment-of-all hover:text-seqorange cursor-pointer py-0.5 px-0.5 ".concat(!this.props.atLeastOneHit && 'disabled'),
+ children: "Alignment of all hits"
+ })
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("li", {
+ className: "mb-1",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("a", {
+ href: "#",
+ className: "flex text-sm download-alignment-of-selected text-seqblue disabled py-0.5 px-0.5",
+ children: ["Alignment of ", /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("span", {
+ className: "font-bold px-0.5"
+ }), " selected hit(s)"]
+ })
+ }), !this.props.data.imported_xml && /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("li", {
+ className: "hover:bg-gray-200 mb-1",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("a", {
+ href: 'download/' + this.props.data.search_id + '.std_tsv',
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("div", {
+ className: "relative flex flex-col items-center group",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "flex items-center w-full",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("span", {
+ className: "w-full text-sm text-seqblue hover:text-seqorange download cursor-pointer py-0.5 px-0.5",
+ children: "Standard tabular report"
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "absolute hidden left-full ml-2 items-center group-hover:flex tooltip-wrap",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("div", {
+ className: "w-0 h-0 border-y-8 border-r-8 border-t-transparent border-b-transparent border-r-black -mr-px"
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("span", {
+ className: "relative z-10 p-2 side-tooltip-text leading-4 text-center text-white whitespace-no-wrap bg-black shadow-lg rounded-md",
+ children: "15 columns: query and subject ID; scientific name, alignment length, mismatches, gaps, identity, start and end coordinates, e value, bitscore, query coverage per subject and per HSP."
+ })]
+ })]
+ })
+ })
+ })
+ }), !this.props.data.imported_xml && /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("li", {
+ className: "hover:bg-gray-200 mb-1",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("a", {
+ href: 'download/' + this.props.data.search_id + '.full_tsv',
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("div", {
+ className: "relative flex flex-col items-center group",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "flex items-center w-full",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("span", {
+ className: "w-full text-sm text-seqblue hover:text-seqorange download cursor-pointer py-0.5 px-0.5",
+ children: "Full tabular report"
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "absolute hidden left-full ml-2 items-center group-hover:flex tooltip-wrap",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("div", {
+ className: "w-0 h-0 border-y-8 border-r-8 border-t-transparent border-b-transparent border-r-black -mr-px"
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("span", {
+ className: "relative z-10 p-2 side-tooltip-text leading-4 text-center text-white whitespace-no-wrap bg-black shadow-lg rounded-md",
+ children: "44 columns: query and subject ID, GI, accessions, and length; alignment details; taxonomy details of subject sequence(s) and query coverage per subject and per HSP."
+ })]
+ })]
+ })
+ })
+ })
+ }), !this.props.data.imported_xml && /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("li", {
+ className: "hover:bg-gray-200 mb-1",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("a", {
+ href: 'download/' + this.props.data.search_id + '.xml',
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("div", {
+ className: "relative flex flex-col items-center group",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "flex items-center w-full",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("span", {
+ className: "w-full text-sm text-seqblue hover:text-seqorange download cursor-pointer py-0.5 px-0.5",
+ children: "Full XML report"
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "absolute hidden left-full ml-2 items-center group-hover:flex tooltip-wrap",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("div", {
+ className: "w-0 h-0 border-y-8 border-r-8 border-t-transparent border-b-transparent border-r-black -mr-px"
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("span", {
+ className: "relative z-10 p-2 side-tooltip-text leading-4 text-center text-white whitespace-no-wrap bg-black shadow-lg rounded-md",
+ children: "Results in XML format."
+ })]
+ })]
+ })
+ })
+ })
+ }), !this.props.data.imported_xml && /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("li", {
+ className: "hover:bg-gray-200 mb-1",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("a", {
+ href: 'download/' + this.props.data.search_id + '.pairwise',
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("div", {
+ className: "relative flex flex-col items-center group",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "flex items-center w-full",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("span", {
+ className: "w-full text-sm text-seqblue hover:text-seqorange download cursor-pointer py-0.5 px-0.5",
+ children: "Full Text report"
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "absolute hidden left-full ml-2 items-center group-hover:flex tooltip-wrap",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("div", {
+ className: "w-0 h-0 border-y-8 border-r-8 border-t-transparent border-b-transparent border-r-black -mr-px"
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("span", {
+ className: "relative z-10 p-2 side-tooltip-text leading-4 text-center text-white whitespace-no-wrap bg-black shadow-lg rounded-md",
+ children: "Results in text format."
+ })]
+ })]
+ })
+ })
+ })
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)(download_links__WEBPACK_IMPORTED_MODULE_5__["default"], {
+ imported_xml: this.props.data.imported_xml,
+ search_id: this.props.data.search_id
+ })]
+ })]
+ });
+ }
+ }, {
+ key: "sharingPanelJSX",
+ value: function sharingPanelJSX() {
+ return /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "sharing-panel",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("div", {
+ className: "pl-px table mb-0 w-full",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("h4", {
+ className: "text-sm font-bold mb-0 mt-2.5",
+ children: "Share results"
+ })
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("ul", {
+ children: [!this.props.cloudSharingEnabled && /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("li", {
+ className: "hover:text-seqorange hover:bg-gray-200",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("a", {
+ id: "copyURL",
+ className: "flex text-sm text-seqblue hover:text-seqorange copy-URL cursor-pointer py-0.5 px-0.5 w-full",
+ onClick: this.copyURL,
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "relative flex gap-2 items-center group w-full",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("i", {
+ className: "fa fa-copy"
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "flex items-center",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("span", {
+ className: "w-full",
+ children: "Copy URL to clipboard"
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("div", {
+ id: "tooltip",
+ className: "absolute hidden left-full ml-2 items-center",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "flex items-center",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("div", {
+ className: "w-0 h-0 border-y-8 border-r-8 border-t-transparent border-b-transparent border-r-black -mr-px"
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("span", {
+ className: "relative z-10 p-2 side-tooltip-text leading-4 text-center text-white whitespace-no-wrap bg-black shadow-lg rounded-md",
+ children: "Copied!"
+ })]
+ })
+ })]
+ })]
+ })
+ })
+ }), !this.props.cloudSharingEnabled && /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("li", {
+ className: "hover:text-seqorange hover:bg-gray-200",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("a", {
+ id: "sendEmail",
+ className: "flex text-sm text-seqblue hover:text-seqorange email-URL cursor-pointer py-0.5 px-0.5 w-full",
+ href: (0,_mailto__WEBPACK_IMPORTED_MODULE_3__["default"])(this.props.data.querydb, this.props.data.program, this.props.data.queries.length, window.location.href),
+ target: "_blank",
+ rel: "noopener noreferrer",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "relative flex gap-2 items-center group w-full",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("i", {
+ className: "fa fa-envelope"
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "flex items-center w-full",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("span", {
+ className: "w-full",
+ children: "Send by email"
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "absolute hidden left-full ml-2 items-center group-hover:flex tooltip-wrap",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("div", {
+ className: "w-0 h-0 border-y-8 border-r-8 border-t-transparent border-b-transparent border-r-black -mr-px"
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("span", {
+ className: "relative z-10 p-2 side-tooltip-text leading-4 text-center text-white whitespace-no-wrap bg-black shadow-lg rounded-md",
+ children: "Send by email"
+ })]
+ })]
+ })]
+ })
+ })
+ }), this.props.cloudSharingEnabled && /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("li", {
+ className: "hover:text-seqorange hover:bg-gray-200",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("button", {
+ className: "flex text-sm text-seqblue hover:text-seqorange cloud-Post cursor-pointer py-0.5 px-0.5 w-full",
+ onClick: this.shareCloudInit,
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "relative flex gap-2 items-center group w-full",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("i", {
+ className: "fa fa-cloud"
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "flex items-center",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("span", {
+ className: "w-full",
+ children: "Share to cloud"
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "absolute hidden left-full ml-2 items-center group-hover:flex tooltip-wrap",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("div", {
+ className: "w-0 h-0 border-y-8 border-r-8 border-t-transparent border-b-transparent border-r-black -mr-px"
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("span", {
+ className: "relative z-10 p-2 side-tooltip-text leading-4 text-center text-white whitespace-no-wrap bg-black shadow-lg rounded-md",
+ children: "Results in pairwise format Upload results to SequenceServer Cloud where it will become accessable to everyone who has a link."
+ })]
+ })]
+ })]
+ })
+ })
+ })]
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)(_cloud_share_modal__WEBPACK_IMPORTED_MODULE_4__["default"], {
+ ref: this.cloudShareModal,
+ querydb: this.props.data.querydb,
+ program: this.props.data.program,
+ queryLength: this.props.data.queries.length
+ })]
+ });
+ }
+ }, {
+ key: "render",
+ value: function render() {
+ return /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "sidebar sticky top-0",
+ children: [this.topPanelJSX(), this.downloadsPanelJSX(), this.sharingPanelJSX(), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("div", {
+ className: "referral-panel",
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsxs)("div", {
+ className: "pl-px table mb-0 w-full text-sm",
+ children: [/*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("h4", {
+ className: "font-bold mb-0 mt-2.5",
+ children: "Recommend SequenceServer"
+ }), /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("p", {
+ children: /*#__PURE__*/(0,react_jsx_runtime__WEBPACK_IMPORTED_MODULE_6__.jsx)("a", {
+ href: "https://sequenceserver.com/referral-program",
+ target: "_blank",
+ className: "text-seqblue hover:text-seqorange",
+ children: "Earn up to $400 per signup"
+ })
+ })]
+ })
+ })]
+ });
+ }
+ }]);
+}(react__WEBPACK_IMPORTED_MODULE_0__.Component);
+
+
+/***/ }),
+
+/***/ "./public/js/svgExporter.js":
+/*!**********************************!*\
+ !*** ./public/js/svgExporter.js ***!
+ \**********************************/
+/***/ ((__unused_webpack_module, __webpack_exports__, __webpack_require__) => {
+
+"use strict";
+__webpack_require__.r(__webpack_exports__);
+/* harmony import */ var _exporter__WEBPACK_IMPORTED_MODULE_0__ = __webpack_require__(/*! ./exporter */ "./public/js/exporter.js");
+/* harmony import */ var d3__WEBPACK_IMPORTED_MODULE_1__ = __webpack_require__(/*! d3 */ "./node_modules/d3/src/index.js");
+/* provided dependency */ var $ = __webpack_require__(/*! jquery */ "./node_modules/jquery/dist/jquery.js");
+/**
+ * svgExporter.js
+ *
+ * Exports ").addClass("ui-effects-wrapper").css({fontSize:"100%",background:"transparent",border:"none",margin:0,padding:0}),// Store the size in case width/height are defined in % - Fixes #5245
+size={width:element.width(),height:element.height()},active=document.activeElement;// Support: Firefox
+// Firefox incorrectly exposes anonymous content
+// https://bugzilla.mozilla.org/show_bug.cgi?id=561664
+try{// eslint-disable-next-line no-unused-expressions
+active.id;}catch(e){active=document.body;}element.wrap(wrapper);// Fixes #7595 - Elements lose focus when wrapped.
+if(element[0]===active||$.contains(element[0],active)){$(active).trigger("focus");}// Hotfix for jQuery 1.4 since some change in wrap() seems to actually
+// lose the reference to the wrapped element
+wrapper=element.parent();// Transfer positioning properties to the wrapper
+if(element.css("position")==="static"){wrapper.css({position:"relative"});element.css({position:"relative"});}else{$.extend(props,{position:element.css("position"),zIndex:element.css("z-index")});$.each(["top","left","bottom","right"],function(i,pos){props[pos]=element.css(pos);if(isNaN(parseInt(props[pos],10))){props[pos]="auto";}});element.css({position:"relative",top:0,left:0,right:"auto",bottom:"auto"});}element.css(size);return wrapper.css(props).show();},removeWrapper:function removeWrapper(element){var active=document.activeElement;if(element.parent().is(".ui-effects-wrapper")){element.parent().replaceWith(element);// Fixes #7595 - Elements lose focus when wrapped.
+if(element[0]===active||$.contains(element[0],active)){$(active).trigger("focus");}}return element;}});}$.extend($.effects,{version:"1.13.3",define:function define(name,mode,effect){if(!effect){effect=mode;mode="effect";}$.effects.effect[name]=effect;$.effects.effect[name].mode=mode;return effect;},scaledDimensions:function scaledDimensions(element,percent,direction){if(percent===0){return{height:0,width:0,outerHeight:0,outerWidth:0};}var x=direction!=="horizontal"?(percent||100)/100:1,y=direction!=="vertical"?(percent||100)/100:1;return{height:element.height()*y,width:element.width()*x,outerHeight:element.outerHeight()*y,outerWidth:element.outerWidth()*x};},clipToBox:function clipToBox(animation){return{width:animation.clip.right-animation.clip.left,height:animation.clip.bottom-animation.clip.top,left:animation.clip.left,top:animation.clip.top};},// Injects recently queued functions to be first in line (after "inprogress")
+unshift:function unshift(element,queueLength,count){var queue=element.queue();if(queueLength>1){queue.splice.apply(queue,[1,0].concat(queue.splice(queueLength,count)));}element.dequeue();},saveStyle:function saveStyle(element){element.data(dataSpaceStyle,element[0].style.cssText);},restoreStyle:function restoreStyle(element){element[0].style.cssText=element.data(dataSpaceStyle)||"";element.removeData(dataSpaceStyle);},mode:function mode(element,_mode){var hidden=element.is(":hidden");if(_mode==="toggle"){_mode=hidden?"show":"hide";}if(hidden?_mode==="hide":_mode==="show"){_mode="none";}return _mode;},// Translates a [top,left] array into a baseline value
+getBaseline:function getBaseline(origin,original){var y,x;switch(origin[0]){case"top":y=0;break;case"middle":y=0.5;break;case"bottom":y=1;break;default:y=origin[0]/original.height;}switch(origin[1]){case"left":x=0;break;case"center":x=0.5;break;case"right":x=1;break;default:x=origin[1]/original.width;}return{x:x,y:y};},// Creates a placeholder element so that the original element can be made absolute
+createPlaceholder:function createPlaceholder(element){var placeholder,cssPosition=element.css("position"),position=element.position();// Lock in margins first to account for form elements, which
+// will change margin if you explicitly set height
+// see: https://jsfiddle.net/JZSMt/3/ https://bugs.webkit.org/show_bug.cgi?id=107380
+// Support: Safari
+element.css({marginTop:element.css("marginTop"),marginBottom:element.css("marginBottom"),marginLeft:element.css("marginLeft"),marginRight:element.css("marginRight")}).outerWidth(element.outerWidth()).outerHeight(element.outerHeight());if(/^(static|relative)/.test(cssPosition)){cssPosition="absolute";placeholder=$("<"+element[0].nodeName+">").insertAfter(element).css({// Convert inline to inline block to account for inline elements
+// that turn to inline block based on content (like img)
+display:/^(inline|ruby)/.test(element.css("display"))?"inline-block":"block",visibility:"hidden",// Margins need to be set to account for margin collapse
+marginTop:element.css("marginTop"),marginBottom:element.css("marginBottom"),marginLeft:element.css("marginLeft"),marginRight:element.css("marginRight"),"float":element.css("float")}).outerWidth(element.outerWidth()).outerHeight(element.outerHeight()).addClass("ui-effects-placeholder");element.data(dataSpace+"placeholder",placeholder);}element.css({position:cssPosition,left:position.left,top:position.top});return placeholder;},removePlaceholder:function removePlaceholder(element){var dataKey=dataSpace+"placeholder",placeholder=element.data(dataKey);if(placeholder){placeholder.remove();element.removeData(dataKey);}},// Removes a placeholder if it exists and restores
+// properties that were modified during placeholder creation
+cleanUp:function cleanUp(element){$.effects.restoreStyle(element);$.effects.removePlaceholder(element);},setTransition:function setTransition(element,list,factor,value){value=value||{};$.each(list,function(i,x){var unit=element.cssUnit(x);if(unit[0]>0){value[x]=unit[0]*factor+unit[1];}});return value;}});// Return an effect options object for the given parameters:
+function _normalizeArguments(effect,options,speed,callback){// Allow passing all options as the first parameter
+if($.isPlainObject(effect)){options=effect;effect=effect.effect;}// Convert to an object
+effect={effect:effect};// Catch (effect, null, ...)
+if(options==null){options={};}// Catch (effect, callback)
+if(typeof options==="function"){callback=options;speed=null;options={};}// Catch (effect, speed, ?)
+if(typeof options==="number"||$.fx.speeds[options]){callback=speed;speed=options;options={};}// Catch (effect, options, callback)
+if(typeof speed==="function"){callback=speed;speed=null;}// Add options to effect
+if(options){$.extend(effect,options);}speed=speed||options.duration;effect.duration=$.fx.off?0:typeof speed==="number"?speed:speed in $.fx.speeds?$.fx.speeds[speed]:$.fx.speeds._default;effect.complete=callback||options.complete;return effect;}function standardAnimationOption(option){// Valid standard speeds (nothing, number, named speed)
+if(!option||typeof option==="number"||$.fx.speeds[option]){return true;}// Invalid strings - treat as "normal" speed
+if(typeof option==="string"&&!$.effects.effect[option]){return true;}// Complete callback
+if(typeof option==="function"){return true;}// Options hash (but not naming an effect)
+if(_typeof(option)==="object"&&!option.effect){return true;}// Didn't match any standard API
+return false;}$.fn.extend({effect:function effect(/* effect, options, speed, callback */){var args=_normalizeArguments.apply(this,arguments),effectMethod=$.effects.effect[args.effect],defaultMode=effectMethod.mode,queue=args.queue,queueName=queue||"fx",complete=args.complete,mode=args.mode,modes=[],prefilter=function prefilter(next){var el=$(this),normalizedMode=$.effects.mode(el,mode)||defaultMode;// Sentinel for duck-punching the :animated pseudo-selector
+el.data(dataSpaceAnimated,true);// Save effect mode for later use,
+// we can't just call $.effects.mode again later,
+// as the .show() below destroys the initial state
+modes.push(normalizedMode);// See $.uiBackCompat inside of run() for removal of defaultMode in 1.14
+if(defaultMode&&(normalizedMode==="show"||normalizedMode===defaultMode&&normalizedMode==="hide")){el.show();}if(!defaultMode||normalizedMode!=="none"){$.effects.saveStyle(el);}if(typeof next==="function"){next();}};if($.fx.off||!effectMethod){// Delegate to the original method (e.g., .show()) if possible
+if(mode){return this[mode](args.duration,complete);}else{return this.each(function(){if(complete){complete.call(this);}});}}function run(next){var elem=$(this);function cleanup(){elem.removeData(dataSpaceAnimated);$.effects.cleanUp(elem);if(args.mode==="hide"){elem.hide();}done();}function done(){if(typeof complete==="function"){complete.call(elem[0]);}if(typeof next==="function"){next();}}// Override mode option on a per element basis,
+// as toggle can be either show or hide depending on element state
+args.mode=modes.shift();if($.uiBackCompat!==false&&!defaultMode){if(elem.is(":hidden")?mode==="hide":mode==="show"){// Call the core method to track "olddisplay" properly
+elem[mode]();done();}else{effectMethod.call(elem[0],args,done);}}else{if(args.mode==="none"){// Call the core method to track "olddisplay" properly
+elem[mode]();done();}else{effectMethod.call(elem[0],args,cleanup);}}}// Run prefilter on all elements first to ensure that
+// any showing or hiding happens before placeholder creation,
+// which ensures that any layout changes are correctly captured.
+return queue===false?this.each(prefilter).each(run):this.queue(queueName,prefilter).queue(queueName,run);},show:function(orig){return function(option){if(standardAnimationOption(option)){return orig.apply(this,arguments);}else{var args=_normalizeArguments.apply(this,arguments);args.mode="show";return this.effect.call(this,args);}};}($.fn.show),hide:function(orig){return function(option){if(standardAnimationOption(option)){return orig.apply(this,arguments);}else{var args=_normalizeArguments.apply(this,arguments);args.mode="hide";return this.effect.call(this,args);}};}($.fn.hide),toggle:function(orig){return function(option){if(standardAnimationOption(option)||typeof option==="boolean"){return orig.apply(this,arguments);}else{var args=_normalizeArguments.apply(this,arguments);args.mode="toggle";return this.effect.call(this,args);}};}($.fn.toggle),cssUnit:function cssUnit(key){var style=this.css(key),val=[];$.each(["em","px","%","pt"],function(i,unit){if(style.indexOf(unit)>0){val=[parseFloat(style),unit];}});return val;},cssClip:function cssClip(clipObj){if(clipObj){return this.css("clip","rect("+clipObj.top+"px "+clipObj.right+"px "+clipObj.bottom+"px "+clipObj.left+"px)");}return parseClip(this.css("clip"),this);},transfer:function transfer(options,done){var element=$(this),target=$(options.to),targetFixed=target.css("position")==="fixed",body=$("body"),fixTop=targetFixed?body.scrollTop():0,fixLeft=targetFixed?body.scrollLeft():0,endPosition=target.offset(),animation={top:endPosition.top-fixTop,left:endPosition.left-fixLeft,height:target.innerHeight(),width:target.innerWidth()},startPosition=element.offset(),transfer=$("
");transfer.appendTo("body").addClass(options.className).css({top:startPosition.top-fixTop,left:startPosition.left-fixLeft,height:element.innerHeight(),width:element.innerWidth(),position:targetFixed?"fixed":"absolute"}).animate(animation,options.duration,options.easing,function(){transfer.remove();if(typeof done==="function"){done();}});}});function parseClip(str,element){var outerWidth=element.outerWidth(),outerHeight=element.outerHeight(),clipRegex=/^rect\((-?\d*\.?\d*px|-?\d+%|auto),?\s*(-?\d*\.?\d*px|-?\d+%|auto),?\s*(-?\d*\.?\d*px|-?\d+%|auto),?\s*(-?\d*\.?\d*px|-?\d+%|auto)\)$/,values=clipRegex.exec(str)||["",0,outerWidth,outerHeight,0];return{top:parseFloat(values[1])||0,right:values[2]==="auto"?outerWidth:parseFloat(values[2]),bottom:values[3]==="auto"?outerHeight:parseFloat(values[3]),left:parseFloat(values[4])||0};}$.fx.step.clip=function(fx){if(!fx.clipInit){fx.start=$(fx.elem).cssClip();if(typeof fx.end==="string"){fx.end=parseClip(fx.end,fx.elem);}fx.clipInit=true;}$(fx.elem).cssClip({top:fx.pos*(fx.end.top-fx.start.top)+fx.start.top,right:fx.pos*(fx.end.right-fx.start.right)+fx.start.right,bottom:fx.pos*(fx.end.bottom-fx.start.bottom)+fx.start.bottom,left:fx.pos*(fx.end.left-fx.start.left)+fx.start.left});};})();/******************************************************************************/ /*********************************** EASING ***********************************/ /******************************************************************************/(function(){// Based on easing equations from Robert Penner (http://robertpenner.com/easing)
+var baseEasings={};$.each(["Quad","Cubic","Quart","Quint","Expo"],function(i,name){baseEasings[name]=function(p){return Math.pow(p,i+2);};});$.extend(baseEasings,{Sine:function Sine(p){return 1-Math.cos(p*Math.PI/2);},Circ:function Circ(p){return 1-Math.sqrt(1-p*p);},Elastic:function Elastic(p){return p===0||p===1?p:-Math.pow(2,8*(p-1))*Math.sin(((p-1)*80-7.5)*Math.PI/15);},Back:function Back(p){return p*p*(3*p-2);},Bounce:function Bounce(p){var pow2,bounce=4;while(p<((pow2=Math.pow(2,--bounce))-1)/11){}return 1/Math.pow(4,3-bounce)-7.5625*Math.pow((pow2*3-2)/22-p,2);}});$.each(baseEasings,function(name,easeIn){$.easing["easeIn"+name]=easeIn;$.easing["easeOut"+name]=function(p){return 1-easeIn(1-p);};$.easing["easeInOut"+name]=function(p){return p<0.5?easeIn(p*2)/2:1-easeIn(p*-2+2)/2;};});})();var effect=$.effects;/*!
+ * jQuery UI Effects Blind 1.13.3
+ * https://jqueryui.com
+ *
+ * Copyright OpenJS Foundation and other contributors
+ * Released under the MIT license.
+ * https://jquery.org/license
+ */ //>>label: Blind Effect
+//>>group: Effects
+//>>description: Blinds the element.
+//>>docs: https://api.jqueryui.com/blind-effect/
+//>>demos: https://jqueryui.com/effect/
+var effectsEffectBlind=$.effects.define("blind","hide",function(options,done){var map={up:["bottom","top"],vertical:["bottom","top"],down:["top","bottom"],left:["right","left"],horizontal:["right","left"],right:["left","right"]},element=$(this),direction=options.direction||"up",start=element.cssClip(),animate={clip:$.extend({},start)},placeholder=$.effects.createPlaceholder(element);animate.clip[map[direction][0]]=animate.clip[map[direction][1]];if(options.mode==="show"){element.cssClip(animate.clip);if(placeholder){placeholder.css($.effects.clipToBox(animate));}animate.clip=start;}if(placeholder){placeholder.animate($.effects.clipToBox(animate),options.duration,options.easing);}element.animate(animate,{queue:false,duration:options.duration,easing:options.easing,complete:done});});/*!
+ * jQuery UI Effects Bounce 1.13.3
+ * https://jqueryui.com
+ *
+ * Copyright OpenJS Foundation and other contributors
+ * Released under the MIT license.
+ * https://jquery.org/license
+ */ //>>label: Bounce Effect
+//>>group: Effects
+//>>description: Bounces an element horizontally or vertically n times.
+//>>docs: https://api.jqueryui.com/bounce-effect/
+//>>demos: https://jqueryui.com/effect/
+var effectsEffectBounce=$.effects.define("bounce",function(options,done){var upAnim,downAnim,refValue,element=$(this),// Defaults:
+mode=options.mode,hide=mode==="hide",show=mode==="show",direction=options.direction||"up",distance=options.distance,times=options.times||5,// Number of internal animations
+anims=times*2+(show||hide?1:0),speed=options.duration/anims,easing=options.easing,// Utility:
+ref=direction==="up"||direction==="down"?"top":"left",motion=direction==="up"||direction==="left",i=0,queuelen=element.queue().length;$.effects.createPlaceholder(element);refValue=element.css(ref);// Default distance for the BIGGEST bounce is the outer Distance / 3
+if(!distance){distance=element[ref==="top"?"outerHeight":"outerWidth"]()/3;}if(show){downAnim={opacity:1};downAnim[ref]=refValue;// If we are showing, force opacity 0 and set the initial position
+// then do the "first" animation
+element.css("opacity",0).css(ref,motion?-distance*2:distance*2).animate(downAnim,speed,easing);}// Start at the smallest distance if we are hiding
+if(hide){distance=distance/Math.pow(2,times-1);}downAnim={};downAnim[ref]=refValue;// Bounces up/down/left/right then back to 0 -- times * 2 animations happen here
+for(;i
>label: Clip Effect
+//>>group: Effects
+//>>description: Clips the element on and off like an old TV.
+//>>docs: https://api.jqueryui.com/clip-effect/
+//>>demos: https://jqueryui.com/effect/
+var effectsEffectClip=$.effects.define("clip","hide",function(options,done){var start,animate={},element=$(this),direction=options.direction||"vertical",both=direction==="both",horizontal=both||direction==="horizontal",vertical=both||direction==="vertical";start=element.cssClip();animate.clip={top:vertical?(start.bottom-start.top)/2:start.top,right:horizontal?(start.right-start.left)/2:start.right,bottom:vertical?(start.bottom-start.top)/2:start.bottom,left:horizontal?(start.right-start.left)/2:start.left};$.effects.createPlaceholder(element);if(options.mode==="show"){element.cssClip(animate.clip);animate.clip=start;}element.animate(animate,{queue:false,duration:options.duration,easing:options.easing,complete:done});});/*!
+ * jQuery UI Effects Drop 1.13.3
+ * https://jqueryui.com
+ *
+ * Copyright OpenJS Foundation and other contributors
+ * Released under the MIT license.
+ * https://jquery.org/license
+ */ //>>label: Drop Effect
+//>>group: Effects
+//>>description: Moves an element in one direction and hides it at the same time.
+//>>docs: https://api.jqueryui.com/drop-effect/
+//>>demos: https://jqueryui.com/effect/
+var effectsEffectDrop=$.effects.define("drop","hide",function(options,done){var distance,element=$(this),mode=options.mode,show=mode==="show",direction=options.direction||"left",ref=direction==="up"||direction==="down"?"top":"left",motion=direction==="up"||direction==="left"?"-=":"+=",oppositeMotion=motion==="+="?"-=":"+=",animation={opacity:0};$.effects.createPlaceholder(element);distance=options.distance||element[ref==="top"?"outerHeight":"outerWidth"](true)/2;animation[ref]=motion+distance;if(show){element.css(animation);animation[ref]=oppositeMotion+distance;animation.opacity=1;}// Animate
+element.animate(animation,{queue:false,duration:options.duration,easing:options.easing,complete:done});});/*!
+ * jQuery UI Effects Explode 1.13.3
+ * https://jqueryui.com
+ *
+ * Copyright OpenJS Foundation and other contributors
+ * Released under the MIT license.
+ * https://jquery.org/license
+ */ //>>label: Explode Effect
+//>>group: Effects
+/* eslint-disable max-len */ //>>description: Explodes an element in all directions into n pieces. Implodes an element to its original wholeness.
+/* eslint-enable max-len */ //>>docs: https://api.jqueryui.com/explode-effect/
+//>>demos: https://jqueryui.com/effect/
+var effectsEffectExplode=$.effects.define("explode","hide",function(options,done){var i,j,left,top,mx,my,rows=options.pieces?Math.round(Math.sqrt(options.pieces)):3,cells=rows,element=$(this),mode=options.mode,show=mode==="show",// Show and then visibility:hidden the element before calculating offset
+offset=element.show().css("visibility","hidden").offset(),// Width and height of a piece
+width=Math.ceil(element.outerWidth()/cells),height=Math.ceil(element.outerHeight()/rows),pieces=[];// Children animate complete:
+function childComplete(){pieces.push(this);if(pieces.length===rows*cells){animComplete();}}// Clone the element for each row and cell.
+for(i=0;i
+top=offset.top+i*height;my=i-(rows-1)/2;for(j=0;j").css({position:"absolute",visibility:"visible",left:-j*width,top:-i*height})// Select the wrapper - make it overflow: hidden and absolute positioned based on
+// where the original was located +left and +top equal to the size of pieces
+.parent().addClass("ui-effects-explode").css({position:"absolute",overflow:"hidden",width:width,height:height,left:left+(show?mx*width:0),top:top+(show?my*height:0),opacity:show?0:1}).animate({left:left+(show?0:mx*width),top:top+(show?0:my*height),opacity:show?1:0},options.duration||500,options.easing,childComplete);}}function animComplete(){element.css({visibility:"visible"});$(pieces).remove();done();}});/*!
+ * jQuery UI Effects Fade 1.13.3
+ * https://jqueryui.com
+ *
+ * Copyright OpenJS Foundation and other contributors
+ * Released under the MIT license.
+ * https://jquery.org/license
+ */ //>>label: Fade Effect
+//>>group: Effects
+//>>description: Fades the element.
+//>>docs: https://api.jqueryui.com/fade-effect/
+//>>demos: https://jqueryui.com/effect/
+var effectsEffectFade=$.effects.define("fade","toggle",function(options,done){var show=options.mode==="show";$(this).css("opacity",show?0:1).animate({opacity:show?1:0},{queue:false,duration:options.duration,easing:options.easing,complete:done});});/*!
+ * jQuery UI Effects Fold 1.13.3
+ * https://jqueryui.com
+ *
+ * Copyright OpenJS Foundation and other contributors
+ * Released under the MIT license.
+ * https://jquery.org/license
+ */ //>>label: Fold Effect
+//>>group: Effects
+//>>description: Folds an element first horizontally and then vertically.
+//>>docs: https://api.jqueryui.com/fold-effect/
+//>>demos: https://jqueryui.com/effect/
+var effectsEffectFold=$.effects.define("fold","hide",function(options,done){// Create element
+var element=$(this),mode=options.mode,show=mode==="show",hide=mode==="hide",size=options.size||15,percent=/([0-9]+)%/.exec(size),horizFirst=!!options.horizFirst,ref=horizFirst?["right","bottom"]:["bottom","right"],duration=options.duration/2,placeholder=$.effects.createPlaceholder(element),start=element.cssClip(),animation1={clip:$.extend({},start)},animation2={clip:$.extend({},start)},distance=[start[ref[0]],start[ref[1]]],queuelen=element.queue().length;if(percent){size=parseInt(percent[1],10)/100*distance[hide?0:1];}animation1.clip[ref[0]]=size;animation2.clip[ref[0]]=size;animation2.clip[ref[1]]=0;if(show){element.cssClip(animation2.clip);if(placeholder){placeholder.css($.effects.clipToBox(animation2));}animation2.clip=start;}// Animate
+element.queue(function(next){if(placeholder){placeholder.animate($.effects.clipToBox(animation1),duration,options.easing).animate($.effects.clipToBox(animation2),duration,options.easing);}next();}).animate(animation1,duration,options.easing).animate(animation2,duration,options.easing).queue(done);$.effects.unshift(element,queuelen,4);});/*!
+ * jQuery UI Effects Highlight 1.13.3
+ * https://jqueryui.com
+ *
+ * Copyright OpenJS Foundation and other contributors
+ * Released under the MIT license.
+ * https://jquery.org/license
+ */ //>>label: Highlight Effect
+//>>group: Effects
+//>>description: Highlights the background of an element in a defined color for a custom duration.
+//>>docs: https://api.jqueryui.com/highlight-effect/
+//>>demos: https://jqueryui.com/effect/
+var effectsEffectHighlight=$.effects.define("highlight","show",function(options,done){var element=$(this),animation={backgroundColor:element.css("backgroundColor")};if(options.mode==="hide"){animation.opacity=0;}$.effects.saveStyle(element);element.css({backgroundImage:"none",backgroundColor:options.color||"#ffff99"}).animate(animation,{queue:false,duration:options.duration,easing:options.easing,complete:done});});/*!
+ * jQuery UI Effects Size 1.13.3
+ * https://jqueryui.com
+ *
+ * Copyright OpenJS Foundation and other contributors
+ * Released under the MIT license.
+ * https://jquery.org/license
+ */ //>>label: Size Effect
+//>>group: Effects
+//>>description: Resize an element to a specified width and height.
+//>>docs: https://api.jqueryui.com/size-effect/
+//>>demos: https://jqueryui.com/effect/
+var effectsEffectSize=$.effects.define("size",function(options,done){// Create element
+var baseline,factor,temp,element=$(this),// Copy for children
+cProps=["fontSize"],vProps=["borderTopWidth","borderBottomWidth","paddingTop","paddingBottom"],hProps=["borderLeftWidth","borderRightWidth","paddingLeft","paddingRight"],// Set options
+mode=options.mode,restore=mode!=="effect",scale=options.scale||"both",origin=options.origin||["middle","center"],position=element.css("position"),pos=element.position(),original=$.effects.scaledDimensions(element),from=options.from||original,to=options.to||$.effects.scaledDimensions(element,0);$.effects.createPlaceholder(element);if(mode==="show"){temp=from;from=to;to=temp;}// Set scaling factor
+factor={from:{y:from.height/original.height,x:from.width/original.width},to:{y:to.height/original.height,x:to.width/original.width}};// Scale the css box
+if(scale==="box"||scale==="both"){// Vertical props scaling
+if(factor.from.y!==factor.to.y){from=$.effects.setTransition(element,vProps,factor.from.y,from);to=$.effects.setTransition(element,vProps,factor.to.y,to);}// Horizontal props scaling
+if(factor.from.x!==factor.to.x){from=$.effects.setTransition(element,hProps,factor.from.x,from);to=$.effects.setTransition(element,hProps,factor.to.x,to);}}// Scale the content
+if(scale==="content"||scale==="both"){// Vertical props scaling
+if(factor.from.y!==factor.to.y){from=$.effects.setTransition(element,cProps,factor.from.y,from);to=$.effects.setTransition(element,cProps,factor.to.y,to);}}// Adjust the position properties based on the provided origin points
+if(origin){baseline=$.effects.getBaseline(origin,original);from.top=(original.outerHeight-from.outerHeight)*baseline.y+pos.top;from.left=(original.outerWidth-from.outerWidth)*baseline.x+pos.left;to.top=(original.outerHeight-to.outerHeight)*baseline.y+pos.top;to.left=(original.outerWidth-to.outerWidth)*baseline.x+pos.left;}delete from.outerHeight;delete from.outerWidth;element.css(from);// Animate the children if desired
+if(scale==="content"||scale==="both"){vProps=vProps.concat(["marginTop","marginBottom"]).concat(cProps);hProps=hProps.concat(["marginLeft","marginRight"]);// Only animate children with width attributes specified
+// TODO: is this right? should we include anything with css width specified as well
+element.find("*[width]").each(function(){var child=$(this),childOriginal=$.effects.scaledDimensions(child),childFrom={height:childOriginal.height*factor.from.y,width:childOriginal.width*factor.from.x,outerHeight:childOriginal.outerHeight*factor.from.y,outerWidth:childOriginal.outerWidth*factor.from.x},childTo={height:childOriginal.height*factor.to.y,width:childOriginal.width*factor.to.x,outerHeight:childOriginal.height*factor.to.y,outerWidth:childOriginal.width*factor.to.x};// Vertical props scaling
+if(factor.from.y!==factor.to.y){childFrom=$.effects.setTransition(child,vProps,factor.from.y,childFrom);childTo=$.effects.setTransition(child,vProps,factor.to.y,childTo);}// Horizontal props scaling
+if(factor.from.x!==factor.to.x){childFrom=$.effects.setTransition(child,hProps,factor.from.x,childFrom);childTo=$.effects.setTransition(child,hProps,factor.to.x,childTo);}if(restore){$.effects.saveStyle(child);}// Animate children
+child.css(childFrom);child.animate(childTo,options.duration,options.easing,function(){// Restore children
+if(restore){$.effects.restoreStyle(child);}});});}// Animate
+element.animate(to,{queue:false,duration:options.duration,easing:options.easing,complete:function complete(){var offset=element.offset();if(to.opacity===0){element.css("opacity",from.opacity);}if(!restore){element.css("position",position==="static"?"relative":position).offset(offset);// Need to save style here so that automatic style restoration
+// doesn't restore to the original styles from before the animation.
+$.effects.saveStyle(element);}done();}});});/*!
+ * jQuery UI Effects Scale 1.13.3
+ * https://jqueryui.com
+ *
+ * Copyright OpenJS Foundation and other contributors
+ * Released under the MIT license.
+ * https://jquery.org/license
+ */ //>>label: Scale Effect
+//>>group: Effects
+//>>description: Grows or shrinks an element and its content.
+//>>docs: https://api.jqueryui.com/scale-effect/
+//>>demos: https://jqueryui.com/effect/
+var effectsEffectScale=$.effects.define("scale",function(options,done){// Create element
+var el=$(this),mode=options.mode,percent=parseInt(options.percent,10)||(parseInt(options.percent,10)===0?0:mode!=="effect"?0:100),newOptions=$.extend(true,{from:$.effects.scaledDimensions(el),to:$.effects.scaledDimensions(el,percent,options.direction||"both"),origin:options.origin||["middle","center"]},options);// Fade option to support puff
+if(options.fade){newOptions.from.opacity=1;newOptions.to.opacity=0;}$.effects.effect.size.call(this,newOptions,done);});/*!
+ * jQuery UI Effects Puff 1.13.3
+ * https://jqueryui.com
+ *
+ * Copyright OpenJS Foundation and other contributors
+ * Released under the MIT license.
+ * https://jquery.org/license
+ */ //>>label: Puff Effect
+//>>group: Effects
+//>>description: Creates a puff effect by scaling the element up and hiding it at the same time.
+//>>docs: https://api.jqueryui.com/puff-effect/
+//>>demos: https://jqueryui.com/effect/
+var effectsEffectPuff=$.effects.define("puff","hide",function(options,done){var newOptions=$.extend(true,{},options,{fade:true,percent:parseInt(options.percent,10)||150});$.effects.effect.scale.call(this,newOptions,done);});/*!
+ * jQuery UI Effects Pulsate 1.13.3
+ * https://jqueryui.com
+ *
+ * Copyright OpenJS Foundation and other contributors
+ * Released under the MIT license.
+ * https://jquery.org/license
+ */ //>>label: Pulsate Effect
+//>>group: Effects
+//>>description: Pulsates an element n times by changing the opacity to zero and back.
+//>>docs: https://api.jqueryui.com/pulsate-effect/
+//>>demos: https://jqueryui.com/effect/
+var effectsEffectPulsate=$.effects.define("pulsate","show",function(options,done){var element=$(this),mode=options.mode,show=mode==="show",hide=mode==="hide",showhide=show||hide,// Showing or hiding leaves off the "last" animation
+anims=(options.times||5)*2+(showhide?1:0),duration=options.duration/anims,animateTo=0,i=1,queuelen=element.queue().length;if(show||!element.is(":visible")){element.css("opacity",0).show();animateTo=1;}// Anims - 1 opacity "toggles"
+for(;i
>label: Shake Effect
+//>>group: Effects
+//>>description: Shakes an element horizontally or vertically n times.
+//>>docs: https://api.jqueryui.com/shake-effect/
+//>>demos: https://jqueryui.com/effect/
+var effectsEffectShake=$.effects.define("shake",function(options,done){var i=1,element=$(this),direction=options.direction||"left",distance=options.distance||20,times=options.times||3,anims=times*2+1,speed=Math.round(options.duration/anims),ref=direction==="up"||direction==="down"?"top":"left",positiveMotion=direction==="up"||direction==="left",animation={},animation1={},animation2={},queuelen=element.queue().length;$.effects.createPlaceholder(element);// Animation
+animation[ref]=(positiveMotion?"-=":"+=")+distance;animation1[ref]=(positiveMotion?"+=":"-=")+distance*2;animation2[ref]=(positiveMotion?"-=":"+=")+distance*2;// Animate
+element.animate(animation,speed,options.easing);// Shakes
+for(;i
>label: Slide Effect
+//>>group: Effects
+//>>description: Slides an element in and out of the viewport.
+//>>docs: https://api.jqueryui.com/slide-effect/
+//>>demos: https://jqueryui.com/effect/
+var effectsEffectSlide=$.effects.define("slide","show",function(options,done){var startClip,startRef,element=$(this),map={up:["bottom","top"],down:["top","bottom"],left:["right","left"],right:["left","right"]},mode=options.mode,direction=options.direction||"left",ref=direction==="up"||direction==="down"?"top":"left",positiveMotion=direction==="up"||direction==="left",distance=options.distance||element[ref==="top"?"outerHeight":"outerWidth"](true),animation={};$.effects.createPlaceholder(element);startClip=element.cssClip();startRef=element.position()[ref];// Define hide animation
+animation[ref]=(positiveMotion?-1:1)*distance+startRef;animation.clip=element.cssClip();animation.clip[map[direction][1]]=animation.clip[map[direction][0]];// Reverse the animation if we're showing
+if(mode==="show"){element.cssClip(animation.clip);element.css(ref,animation[ref]);animation.clip=startClip;animation[ref]=startRef;}// Actually animate
+element.animate(animation,{queue:false,duration:options.duration,easing:options.easing,complete:done});});/*!
+ * jQuery UI Effects Transfer 1.13.3
+ * https://jqueryui.com
+ *
+ * Copyright OpenJS Foundation and other contributors
+ * Released under the MIT license.
+ * https://jquery.org/license
+ */ //>>label: Transfer Effect
+//>>group: Effects
+//>>description: Displays a transfer effect from one element to another.
+//>>docs: https://api.jqueryui.com/transfer-effect/
+//>>demos: https://jqueryui.com/effect/
+var effect;if($.uiBackCompat!==false){effect=$.effects.define("transfer",function(options,done){$(this).transfer(options,done);});}var effectsEffectTransfer=effect;/*!
+ * jQuery UI Focusable 1.13.3
+ * https://jqueryui.com
+ *
+ * Copyright OpenJS Foundation and other contributors
+ * Released under the MIT license.
+ * https://jquery.org/license
+ */ //>>label: :focusable Selector
+//>>group: Core
+//>>description: Selects elements which can be focused.
+//>>docs: https://api.jqueryui.com/focusable-selector/
+// Selectors
+$.ui.focusable=function(element,hasTabindex){var map,mapName,img,focusableIfVisible,fieldset,nodeName=element.nodeName.toLowerCase();if("area"===nodeName){map=element.parentNode;mapName=map.name;if(!element.href||!mapName||map.nodeName.toLowerCase()!=="map"){return false;}img=$("img[usemap='#"+mapName+"']");return img.length>0&&img.is(":visible");}if(/^(input|select|textarea|button|object)$/.test(nodeName)){focusableIfVisible=!element.disabled;if(focusableIfVisible){// Form controls within a disabled fieldset are disabled.
+// However, controls within the fieldset's legend do not get disabled.
+// Since controls generally aren't placed inside legends, we skip
+// this portion of the check.
+fieldset=$(element).closest("fieldset")[0];if(fieldset){focusableIfVisible=!fieldset.disabled;}}}else if("a"===nodeName){focusableIfVisible=element.href||hasTabindex;}else{focusableIfVisible=hasTabindex;}return focusableIfVisible&&$(element).is(":visible")&&visible($(element));};// Support: IE 8 only
+// IE 8 doesn't resolve inherit to visible/hidden for computed values
+function visible(element){var visibility=element.css("visibility");while(visibility==="inherit"){element=element.parent();visibility=element.css("visibility");}return visibility==="visible";}$.extend($.expr.pseudos,{focusable:function focusable(element){return $.ui.focusable(element,$.attr(element,"tabindex")!=null);}});var focusable=$.ui.focusable;// Support: IE8 Only
+// IE8 does not support the form attribute and when it is supplied. It overwrites the form prop
+// with a string, so we need to find the proper form.
+var form=$.fn._form=function(){return typeof this[0].form==="string"?this.closest("form"):$(this[0].form);};/*!
+ * jQuery UI Form Reset Mixin 1.13.3
+ * https://jqueryui.com
+ *
+ * Copyright OpenJS Foundation and other contributors
+ * Released under the MIT license.
+ * https://jquery.org/license
+ */ //>>label: Form Reset Mixin
+//>>group: Core
+//>>description: Refresh input widgets when their form is reset
+//>>docs: https://api.jqueryui.com/form-reset-mixin/
+var formResetMixin=$.ui.formResetMixin={_formResetHandler:function _formResetHandler(){var form=$(this);// Wait for the form reset to actually happen before refreshing
+setTimeout(function(){var instances=form.data("ui-form-reset-instances");$.each(instances,function(){this.refresh();});});},_bindFormResetHandler:function _bindFormResetHandler(){this.form=this.element._form();if(!this.form.length){return;}var instances=this.form.data("ui-form-reset-instances")||[];if(!instances.length){// We don't use _on() here because we use a single event handler per form
+this.form.on("reset.ui-form-reset",this._formResetHandler);}instances.push(this);this.form.data("ui-form-reset-instances",instances);},_unbindFormResetHandler:function _unbindFormResetHandler(){if(!this.form.length){return;}var instances=this.form.data("ui-form-reset-instances");instances.splice($.inArray(this,instances),1);if(instances.length){this.form.data("ui-form-reset-instances",instances);}else{this.form.removeData("ui-form-reset-instances").off("reset.ui-form-reset");}}};/*!
+ * jQuery UI Support for jQuery core 1.8.x and newer 1.13.3
+ * https://jqueryui.com
+ *
+ * Copyright OpenJS Foundation and other contributors
+ * Released under the MIT license.
+ * https://jquery.org/license
+ *
+ */ //>>label: jQuery 1.8+ Support
+//>>group: Core
+//>>description: Support version 1.8.x and newer of jQuery core
+// Support: jQuery 1.9.x or older
+// $.expr[ ":" ] is deprecated.
+if(!$.expr.pseudos){$.expr.pseudos=$.expr[":"];}// Support: jQuery 1.11.x or older
+// $.unique has been renamed to $.uniqueSort
+if(!$.uniqueSort){$.uniqueSort=$.unique;}// Support: jQuery 2.2.x or older.
+// This method has been defined in jQuery 3.0.0.
+// Code from https://github.com/jquery/jquery/blob/e539bac79e666bba95bba86d690b4e609dca2286/src/selector/escapeSelector.js
+if(!$.escapeSelector){// CSS string/identifier serialization
+// https://drafts.csswg.org/cssom/#common-serializing-idioms
+var rcssescape=/([\0-\x1f\x7f]|^-?\d)|^-$|[^\x80-\uFFFF\w-]/g;var fcssescape=function fcssescape(ch,asCodePoint){if(asCodePoint){// U+0000 NULL becomes U+FFFD REPLACEMENT CHARACTER
+if(ch==="\0"){return"\uFFFD";}// Control characters and (dependent upon position) numbers get escaped as code points
+return ch.slice(0,-1)+"\\"+ch.charCodeAt(ch.length-1).toString(16)+" ";}// Other potentially-special ASCII characters get backslash-escaped
+return"\\"+ch;};$.escapeSelector=function(sel){return(sel+"").replace(rcssescape,fcssescape);};}// Support: jQuery 3.4.x or older
+// These methods have been defined in jQuery 3.5.0.
+if(!$.fn.even||!$.fn.odd){$.fn.extend({even:function even(){return this.filter(function(i){return i%2===0;});},odd:function odd(){return this.filter(function(i){return i%2===1;});}});};/*!
+ * jQuery UI Keycode 1.13.3
+ * https://jqueryui.com
+ *
+ * Copyright OpenJS Foundation and other contributors
+ * Released under the MIT license.
+ * https://jquery.org/license
+ */ //>>label: Keycode
+//>>group: Core
+//>>description: Provide keycodes as keynames
+//>>docs: https://api.jqueryui.com/jQuery.ui.keyCode/
+var keycode=$.ui.keyCode={BACKSPACE:8,COMMA:188,DELETE:46,DOWN:40,END:35,ENTER:13,ESCAPE:27,HOME:36,LEFT:37,PAGE_DOWN:34,PAGE_UP:33,PERIOD:190,RIGHT:39,SPACE:32,TAB:9,UP:38};/*!
+ * jQuery UI Labels 1.13.3
+ * https://jqueryui.com
+ *
+ * Copyright OpenJS Foundation and other contributors
+ * Released under the MIT license.
+ * https://jquery.org/license
+ */ //>>label: labels
+//>>group: Core
+//>>description: Find all the labels associated with a given input
+//>>docs: https://api.jqueryui.com/labels/
+var labels=$.fn.labels=function(){var ancestor,selector,id,labels,ancestors;if(!this.length){return this.pushStack([]);}// Check control.labels first
+if(this[0].labels&&this[0].labels.length){return this.pushStack(this[0].labels);}// Support: IE <= 11, FF <= 37, Android <= 2.3 only
+// Above browsers do not support control.labels. Everything below is to support them
+// as well as document fragments. control.labels does not work on document fragments
+labels=this.eq(0).parents("label");// Look for the label based on the id
+id=this.attr("id");if(id){// We don't search against the document in case the element
+// is disconnected from the DOM
+ancestor=this.eq(0).parents().last();// Get a full set of top level ancestors
+ancestors=ancestor.add(ancestor.length?ancestor.siblings():this.siblings());// Create a selector for the label based on the id
+selector="label[for='"+$.escapeSelector(id)+"']";labels=labels.add(ancestors.find(selector).addBack(selector));}// Return whatever we have found for labels
+return this.pushStack(labels);};/*!
+ * jQuery UI Scroll Parent 1.13.3
+ * https://jqueryui.com
+ *
+ * Copyright OpenJS Foundation and other contributors
+ * Released under the MIT license.
+ * https://jquery.org/license
+ */ //>>label: scrollParent
+//>>group: Core
+//>>description: Get the closest ancestor element that is scrollable.
+//>>docs: https://api.jqueryui.com/scrollParent/
+var scrollParent=$.fn.scrollParent=function(includeHidden){var position=this.css("position"),excludeStaticParent=position==="absolute",overflowRegex=includeHidden?/(auto|scroll|hidden)/:/(auto|scroll)/,scrollParent=this.parents().filter(function(){var parent=$(this);if(excludeStaticParent&&parent.css("position")==="static"){return false;}return overflowRegex.test(parent.css("overflow")+parent.css("overflow-y")+parent.css("overflow-x"));}).eq(0);return position==="fixed"||!scrollParent.length?$(this[0].ownerDocument||document):scrollParent;};/*!
+ * jQuery UI Tabbable 1.13.3
+ * https://jqueryui.com
+ *
+ * Copyright OpenJS Foundation and other contributors
+ * Released under the MIT license.
+ * https://jquery.org/license
+ */ //>>label: :tabbable Selector
+//>>group: Core
+//>>description: Selects elements which can be tabbed to.
+//>>docs: https://api.jqueryui.com/tabbable-selector/
+var tabbable=$.extend($.expr.pseudos,{tabbable:function tabbable(element){var tabIndex=$.attr(element,"tabindex"),hasTabindex=tabIndex!=null;return(!hasTabindex||tabIndex>=0)&&$.ui.focusable(element,hasTabindex);}});/*!
+ * jQuery UI Unique ID 1.13.3
+ * https://jqueryui.com
+ *
+ * Copyright OpenJS Foundation and other contributors
+ * Released under the MIT license.
+ * https://jquery.org/license
+ */ //>>label: uniqueId
+//>>group: Core
+//>>description: Functions to generate and remove uniqueId's
+//>>docs: https://api.jqueryui.com/uniqueId/
+var uniqueId=$.fn.extend({uniqueId:function(){var uuid=0;return function(){return this.each(function(){if(!this.id){this.id="ui-id-"+ ++uuid;}});};}(),removeUniqueId:function removeUniqueId(){return this.each(function(){if(/^ui-id-\d+$/.test(this.id)){$(this).removeAttr("id");}});}});/*!
+ * jQuery UI Accordion 1.13.3
+ * https://jqueryui.com
+ *
+ * Copyright OpenJS Foundation and other contributors
+ * Released under the MIT license.
+ * https://jquery.org/license
+ */ //>>label: Accordion
+//>>group: Widgets
+/* eslint-disable max-len */ //>>description: Displays collapsible content panels for presenting information in a limited amount of space.
+/* eslint-enable max-len */ //>>docs: https://api.jqueryui.com/accordion/
+//>>demos: https://jqueryui.com/accordion/
+//>>css.structure: ../../themes/base/core.css
+//>>css.structure: ../../themes/base/accordion.css
+//>>css.theme: ../../themes/base/theme.css
+var widgetsAccordion=$.widget("ui.accordion",{version:"1.13.3",options:{active:0,animate:{},classes:{"ui-accordion-header":"ui-corner-top","ui-accordion-header-collapsed":"ui-corner-all","ui-accordion-content":"ui-corner-bottom"},collapsible:false,event:"click",header:function header(elem){return elem.find("> li > :first-child").add(elem.find("> :not(li)").even());},heightStyle:"auto",icons:{activeHeader:"ui-icon-triangle-1-s",header:"ui-icon-triangle-1-e"},// Callbacks
+activate:null,beforeActivate:null},hideProps:{borderTopWidth:"hide",borderBottomWidth:"hide",paddingTop:"hide",paddingBottom:"hide",height:"hide"},showProps:{borderTopWidth:"show",borderBottomWidth:"show",paddingTop:"show",paddingBottom:"show",height:"show"},_create:function _create(){var options=this.options;this.prevShow=this.prevHide=$();this._addClass("ui-accordion","ui-widget ui-helper-reset");this.element.attr("role","tablist");// Don't allow collapsible: false and active: false / null
+if(!options.collapsible&&(options.active===false||options.active==null)){options.active=0;}this._processPanels();// handle negative values
+if(options.active<0){options.active+=this.headers.length;}this._refresh();},_getCreateEventData:function _getCreateEventData(){return{header:this.active,panel:!this.active.length?$():this.active.next()};},_createIcons:function _createIcons(){var icon,children,icons=this.options.icons;if(icons){icon=$("
");this._addClass(icon,"ui-accordion-header-icon","ui-icon "+icons.header);icon.prependTo(this.headers);children=this.active.children(".ui-accordion-header-icon");this._removeClass(children,icons.header)._addClass(children,null,icons.activeHeader)._addClass(this.headers,"ui-accordion-icons");}},_destroyIcons:function _destroyIcons(){this._removeClass(this.headers,"ui-accordion-icons");this.headers.children(".ui-accordion-header-icon").remove();},_destroy:function _destroy(){var contents;// Clean up main element
+this.element.removeAttr("role");// Clean up headers
+this.headers.removeAttr("role aria-expanded aria-selected aria-controls tabIndex").removeUniqueId();this._destroyIcons();// Clean up content panels
+contents=this.headers.next().css("display","").removeAttr("role aria-hidden aria-labelledby").removeUniqueId();if(this.options.heightStyle!=="content"){contents.css("height","");}},_setOption:function _setOption(key,value){if(key==="active"){// _activate() will handle invalid values and update this.options
+this._activate(value);return;}if(key==="event"){if(this.options.event){this._off(this.headers,this.options.event);}this._setupEvents(value);}this._super(key,value);// Setting collapsible: false while collapsed; open first panel
+if(key==="collapsible"&&!value&&this.options.active===false){this._activate(0);}if(key==="icons"){this._destroyIcons();if(value){this._createIcons();}}},_setOptionDisabled:function _setOptionDisabled(value){this._super(value);this.element.attr("aria-disabled",value);// Support: IE8 Only
+// #5332 / #6059 - opacity doesn't cascade to positioned elements in IE
+// so we need to add the disabled class to the headers and panels
+this._toggleClass(null,"ui-state-disabled",!!value);this._toggleClass(this.headers.add(this.headers.next()),null,"ui-state-disabled",!!value);},_keydown:function _keydown(event){if(event.altKey||event.ctrlKey){return;}var keyCode=$.ui.keyCode,length=this.headers.length,currentIndex=this.headers.index(event.target),toFocus=false;switch(event.keyCode){case keyCode.RIGHT:case keyCode.DOWN:toFocus=this.headers[(currentIndex+1)%length];break;case keyCode.LEFT:case keyCode.UP:toFocus=this.headers[(currentIndex-1+length)%length];break;case keyCode.SPACE:case keyCode.ENTER:this._eventHandler(event);break;case keyCode.HOME:toFocus=this.headers[0];break;case keyCode.END:toFocus=this.headers[length-1];break;}if(toFocus){$(event.target).attr("tabIndex",-1);$(toFocus).attr("tabIndex",0);$(toFocus).trigger("focus");event.preventDefault();}},_panelKeyDown:function _panelKeyDown(event){if(event.keyCode===$.ui.keyCode.UP&&event.ctrlKey){$(event.currentTarget).prev().trigger("focus");}},refresh:function refresh(){var options=this.options;this._processPanels();// Was collapsed or no panel
+if(options.active===false&&options.collapsible===true||!this.headers.length){options.active=false;this.active=$();// active false only when collapsible is true
+}else if(options.active===false){this._activate(0);// was active, but active panel is gone
+}else if(this.active.length&&!$.contains(this.element[0],this.active[0])){// all remaining panel are disabled
+if(this.headers.length===this.headers.find(".ui-state-disabled").length){options.active=false;this.active=$();// activate previous panel
+}else{this._activate(Math.max(0,options.active-1));}// was active, active panel still exists
+}else{// make sure active index is correct
+options.active=this.headers.index(this.active);}this._destroyIcons();this._refresh();},_processPanels:function _processPanels(){var prevHeaders=this.headers,prevPanels=this.panels;if(typeof this.options.header==="function"){this.headers=this.options.header(this.element);}else{this.headers=this.element.find(this.options.header);}this._addClass(this.headers,"ui-accordion-header ui-accordion-header-collapsed","ui-state-default");this.panels=this.headers.next().filter(":not(.ui-accordion-content-active)").hide();this._addClass(this.panels,"ui-accordion-content","ui-helper-reset ui-widget-content");// Avoid memory leaks (#10056)
+if(prevPanels){this._off(prevHeaders.not(this.headers));this._off(prevPanels.not(this.panels));}},_refresh:function _refresh(){var maxHeight,options=this.options,heightStyle=options.heightStyle,parent=this.element.parent();this.active=this._findActive(options.active);this._addClass(this.active,"ui-accordion-header-active","ui-state-active")._removeClass(this.active,"ui-accordion-header-collapsed");this._addClass(this.active.next(),"ui-accordion-content-active");this.active.next().show();this.headers.attr("role","tab").each(function(){var header=$(this),headerId=header.uniqueId().attr("id"),panel=header.next(),panelId=panel.uniqueId().attr("id");header.attr("aria-controls",panelId);panel.attr("aria-labelledby",headerId);}).next().attr("role","tabpanel");this.headers.not(this.active).attr({"aria-selected":"false","aria-expanded":"false",tabIndex:-1}).next().attr({"aria-hidden":"true"}).hide();// Make sure at least one header is in the tab order
+if(!this.active.length){this.headers.eq(0).attr("tabIndex",0);}else{this.active.attr({"aria-selected":"true","aria-expanded":"true",tabIndex:0}).next().attr({"aria-hidden":"false"});}this._createIcons();this._setupEvents(options.event);if(heightStyle==="fill"){maxHeight=parent.height();this.element.siblings(":visible").each(function(){var elem=$(this),position=elem.css("position");if(position==="absolute"||position==="fixed"){return;}maxHeight-=elem.outerHeight(true);});this.headers.each(function(){maxHeight-=$(this).outerHeight(true);});this.headers.next().each(function(){$(this).height(Math.max(0,maxHeight-$(this).innerHeight()+$(this).height()));}).css("overflow","auto");}else if(heightStyle==="auto"){maxHeight=0;this.headers.next().each(function(){var isVisible=$(this).is(":visible");if(!isVisible){$(this).show();}maxHeight=Math.max(maxHeight,$(this).css("height","").height());if(!isVisible){$(this).hide();}}).height(maxHeight);}},_activate:function _activate(index){var active=this._findActive(index)[0];// Trying to activate the already active panel
+if(active===this.active[0]){return;}// Trying to collapse, simulate a click on the currently active header
+active=active||this.active[0];this._eventHandler({target:active,currentTarget:active,preventDefault:$.noop});},_findActive:function _findActive(selector){return typeof selector==="number"?this.headers.eq(selector):$();},_setupEvents:function _setupEvents(event){var events={keydown:"_keydown"};if(event){$.each(event.split(" "),function(index,eventName){events[eventName]="_eventHandler";});}this._off(this.headers.add(this.headers.next()));this._on(this.headers,events);this._on(this.headers.next(),{keydown:"_panelKeyDown"});this._hoverable(this.headers);this._focusable(this.headers);},_eventHandler:function _eventHandler(event){var activeChildren,clickedChildren,options=this.options,active=this.active,clicked=$(event.currentTarget),clickedIsActive=clicked[0]===active[0],collapsing=clickedIsActive&&options.collapsible,toShow=collapsing?$():clicked.next(),toHide=active.next(),eventData={oldHeader:active,oldPanel:toHide,newHeader:collapsing?$():clicked,newPanel:toShow};event.preventDefault();if(// click on active header, but not collapsible
+clickedIsActive&&!options.collapsible||// allow canceling activation
+this._trigger("beforeActivate",event,eventData)===false){return;}options.active=collapsing?false:this.headers.index(clicked);// When the call to ._toggle() comes after the class changes
+// it causes a very odd bug in IE 8 (see #6720)
+this.active=clickedIsActive?$():clicked;this._toggle(eventData);// Switch classes
+// corner classes on the previously active header stay after the animation
+this._removeClass(active,"ui-accordion-header-active","ui-state-active");if(options.icons){activeChildren=active.children(".ui-accordion-header-icon");this._removeClass(activeChildren,null,options.icons.activeHeader)._addClass(activeChildren,null,options.icons.header);}if(!clickedIsActive){this._removeClass(clicked,"ui-accordion-header-collapsed")._addClass(clicked,"ui-accordion-header-active","ui-state-active");if(options.icons){clickedChildren=clicked.children(".ui-accordion-header-icon");this._removeClass(clickedChildren,null,options.icons.header)._addClass(clickedChildren,null,options.icons.activeHeader);}this._addClass(clicked.next(),"ui-accordion-content-active");}},_toggle:function _toggle(data){var toShow=data.newPanel,toHide=this.prevShow.length?this.prevShow:data.oldPanel;// Handle activating a panel during the animation for another activation
+this.prevShow.add(this.prevHide).stop(true,true);this.prevShow=toShow;this.prevHide=toHide;if(this.options.animate){this._animate(toShow,toHide,data);}else{toHide.hide();toShow.show();this._toggleComplete(data);}toHide.attr({"aria-hidden":"true"});toHide.prev().attr({"aria-selected":"false","aria-expanded":"false"});// if we're switching panels, remove the old header from the tab order
+// if we're opening from collapsed state, remove the previous header from the tab order
+// if we're collapsing, then keep the collapsing header in the tab order
+if(toShow.length&&toHide.length){toHide.prev().attr({"tabIndex":-1,"aria-expanded":"false"});}else if(toShow.length){this.headers.filter(function(){return parseInt($(this).attr("tabIndex"),10)===0;}).attr("tabIndex",-1);}toShow.attr("aria-hidden","false").prev().attr({"aria-selected":"true","aria-expanded":"true",tabIndex:0});},_animate:function _animate(toShow,toHide,data){var total,easing,duration,that=this,adjust=0,boxSizing=toShow.css("box-sizing"),down=toShow.length&&(!toHide.length||toShow.index()
+try{activeElement=document.activeElement;}catch(error){activeElement=document.body;}// Support: IE 9 - 11 only
+// IE may return null instead of an element
+// Interestingly, this only seems to occur when NOT in an iframe
+if(!activeElement){activeElement=document.body;}// Support: IE 11 only
+// IE11 returns a seemingly empty object in some cases when accessing
+// document.activeElement from an