NAMESPACE

# Generated by roxygen2: do not edit by hand

export(F_beta_score)
export(LOO_CV_with_BM)
export(LOO_CV_with_PE)
export(analyzeResidualErrorByCI)
export(analyzeResidualErrorByHeteroscedasticity)
export(analyzeResidualErrorByPPplot)
export(calculateBinomRSS)
export(calculateHeteroscedasticity)
export(calculate_CI_from_error_distribution)
export(calculate_R2cv)
export(calculate_error_mean_and_var)
export(compoundNormalMoments)
export(continuousAceByPIC)
export(crossValidationWithPE)
export(dMixNormal)
export(dPEpoisnorm)
export(discretizeResult)
export(findBestNormalApproximation1)
export(findBestNormalApproximation2)
export(findEdges)
export(findSisters)
export(findTerminalPIC)
export(fit.model.byNM)
export(fit.model.byNM.2step)
export(fitPE)
export(fitPE.phy)
export(fullMarginalReconstructionWithPE)
export(get.AIC)
export(get.params)
export(getAncestor)
export(getConnected)
export(getLatestAncestor)
export(getNextDescendants)
export(getRoot)
export(get_descendant_nodes_for_each_node)
export(get_descendant_tips_for_each_node)
export(globalReconstructionWithPE)
export(initialize.parameters.SP)
export(locate_query_sequences)
export(logitSigmoid)
export(make_traceable_edge_label)
export(marginalReconstruction)
export(marginalReconstructionWithPE)
export(mix_errors_by_weight)
export(normalize.AIC)
export(pMixNormal)
export(pPEpoisnorm)
export(partition_test_set_with_minimum_distance)
export(precision_recall)
export(predTraitByPIC)
export(predictHiddenStateWithPE)
export(predict_hidden_state_by_pic)
export(productNormalDensity)
export(pseudo.Z.score)
export(pseudo.pic)
export(rMixNormal)
export(rPEpoisnorm)
export(reconstructAncestralStates)
export(reroot_tree_at_tip)
export(reverse.logitSigmoid)
export(simulatePET)
export(simulatePET.phy)
export(sort_and_digest)
export(summarize.model.parameter)
export(total.process.variance)
import(ape)
import(bbmle)
import(parallel)
import(pracma)