cloud9.cfn.yaml

---
AWSTemplateFormatVersion: '2010-09-09'
Description: >-
  (WWPS-GWF-NEXTFLOW-CLOUD9) Creates a Cloud9 environment for developing genomics
  workflows using Nextflow

Parameters:
  EnvironmentOwnerIAMType:
    Type: String
    AllowedValues:
      - user
      - assumed-role
    Default: user
  EnvironmentOwnerIAMName:
    Type: String
    Description: >-
      IAM user name or assumed-role name that will be set as the environment owner.
      Note: This cannot be "*"
  
Resources:
  Cloud9Environment:
    Type: AWS::Cloud9::EnvironmentEC2
    Properties: 
      Name: genomics-workflows
      Description: Development environment for building genomics workflows with Nextflow
      InstanceType: m4.large
      AutomaticStopTimeMinutes: 30
      OwnerArn:
        Fn::Join:
          - ":"
          - - !Sub "arn:aws:iam::${AWS::AccountId}"
            - !Join ["/", [!Ref "EnvironmentOwnerIAMType", !Ref "EnvironmentOwnerIAMName"]]
      Repositories:
        # despite the docs saying that this should be a CodeCommit repository
        # it seems to work with any publically accessible git repository with an HTTPS url
        - RepositoryUrl: https://github.com/wleepang/demo-genomics-workflows.git
          PathComponent: genomics-workflows
...