Error related to tutorial of SandiaD case in pdfFoam #2
Comments
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Sorry for the late answer, I missed the notification... You'll have to run the |
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Thanks for your reply. Please have a look and help me. Can I have your mail-Id So I can able to communicate easily? |
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Without the output I won't be able to help much. If you use the |
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And please refrain from posting the same message or typo fixes as new messages. With the three dots you can edit a previous message. |
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Sorry, I am new to this platform, therefore, not aware of the full features of GitHub. I used the Allrun scripts. But the simulation is not yet started. Please look at the attached zip file (full case with output log files). Please advise rectifying the error shown in the log files. |
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Has this problem been resolved? In fact, I have just encountered the same problem as you. I only ran Allrun without making any changes to the code, but it also displayed "cannot find file/public21/home/sc1/bxy/tpdf/pdfFoam-master/tutorials/SandiaD/constant/boundaryData/jet/points at line 0.". Below are some of my output files attached. slurm.out(Output run through script files) log.blockMesh log.pdfSimpleFoam |
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Dear,
Nope, it is showing the same error as I didn't change anything in the code
after compiling it in openFoam.
Infact, I really interested to use this code for flames. Then after, I
would modified it for turbulent compressible reactive flows.
…On Thu, Dec 21, 2023, 11:55 AM Rockbeth ***@***.***> wrote:
Has this problem been resolved? In fact, I have just encountered the same
problem as you. I only ran Allrun without making any changes to the code,
but it also displayed "cannot find
file/public21/home/sc1/bxy/tpdf/pdfFoam-master/tutorials/SandiaD/constant/boundaryData/jet/points
at line 0.". Below are some of my output files attached.
slurm.out(Output run through script files)
WARNING: $LD_LIBRARY_PATH does not agree with $LD_LIBRARY_PATH_modshare counter. The following directories' usage counters were adjusted to match. Note that this may mean that module unloading may not work correctly.
Compiling ../tools/Rtime application
Making dependency list for source file R.C
SOURCE=R.C ; g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNoRepository -ftemplate-depth-100 -I/public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/turbulenceModels -I/public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/turbulenceModels/incompressible/RAS/RASModel -I/public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/transportModels -I/public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/finiteVolume/lnInclude -IlnInclude -I. -I/public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/OpenFOAM/lnInclude -I/public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/OSspecific/POSIX/lnInclude -fPIC -c $SOURCE -o Make/linux64GccDPOpt/R.o
In file included from /public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/OpenFOAM/lnInclude/Field.H:360:0,
from /public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/OpenFOAM/lnInclude/labelField.H:39,
from /public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/OpenFOAM/lnInclude/primitiveFields.H:37,
from /public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/OpenFOAM/lnInclude/pointField.H:36,
from /public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/OpenFOAM/lnInclude/edge.H:40,
from /public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/OpenFOAM/lnInclude/edgeList.H:32,
from /public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/OpenFOAM/lnInclude/primitiveMesh.H:57,
from /public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/OpenFOAM/lnInclude/polyMesh.H:44,
from /public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/finiteVolume/lnInclude/fvMesh.H:50,
from /public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/finiteVolume/lnInclude/fvCFD.H:7,
from R.C:36:
/public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/OpenFOAM/lnInclude/Field.C: In member function ‘void Foam::Field<Type>::operator=(const Foam::VectorSpace<Form, Cmpt, nCmpt>&)’:
/public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/OpenFOAM/lnInclude/Field.C:680:42: warning: typedef ‘VSType’ locally defined but not used [-Wunused-local-typedefs]
typedef VectorSpace<Form,Cmpt,nCmpt> VSType;
^
In file included from R.C:52:0:
/public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/OpenFOAM/lnInclude/checkTimeOptions.H: In function ‘int main(int, char**)’:
/public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/OpenFOAM/lnInclude/checkTimeOptions.H:6:13: warning: variable ‘endTime’ set but not used [-Wunused-but-set-variable]
Foam::label endTime = Times.size();
^
g++ -m64 -Dlinux64 -DWM_DP -Wall -Wextra -Wno-unused-parameter -Wold-style-cast -Wnon-virtual-dtor -O3 -DNoRepository -ftemplate-depth-100 -I/public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/turbulenceModels -I/public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/turbulenceModels/incompressible/RAS/RASModel -I/public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/transportModels -I/public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/finiteVolume/lnInclude -IlnInclude -I. -I/public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/OpenFOAM/lnInclude -I/public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/src/OSspecific/POSIX/lnInclude -fPIC -Xlinker --add-needed -Xlinker --no-as-needed Make/linux64GccDPOpt/R.o -L/public21/home/sc1/OpenFOAM/OpenFOAM-2.1.1/platforms/linux64GccDPOpt/lib \
-lincompressibleRASModels -lincompressibleTransportModels -lfiniteVolume -lgenericPatchFields -lOpenFOAM -ldl -lm -o /public21/home/sc1/OpenFOAM/sc1-2.1.1/platforms/linux64GccDPOpt/bin/Rtime
Running blockMesh on /public21/home/sc1/bxy/tpdf/pdfFoam-master/tutorials/SandiaD
Running pdfSimpleFoam on /public21/home/sc1/bxy/tpdf/pdfFoam-master/tutorials/SandiaD
Running Rtime on /public21/home/sc1/bxy/tpdf/pdfFoam-master/tutorials/SandiaD
Running sample on /public21/home/sc1/bxy/tpdf/pdfFoam-master/tutorials/SandiaD
Running ../tools/createPlots on /public21/home/sc1/bxy/tpdf/pdfFoam-master/tutorials/SandiaD
Running ../tools/plotConvergence on /public21/home/sc1/bxy/tpdf/pdfFoam-master/tutorials/SandiaD
log.blockMesh
/*---------------------------------------------------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: 2.1.1 |
| \\ / A nd | Web: www.OpenFOAM.org |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
Build : 2.1.1-221db2718bbb
Exec : blockMesh
Date : Dec 21 2023
Time : 14:03:38
Host : "y2215.para.bscc"
PID : 6839
Case : /public21/home/sc1/bxy/tpdf/pdfFoam-master/tutorials/SandiaD
nProcs : 1
sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
fileModificationChecking : Monitoring run-time modified files using timeStampMaster
allowSystemOperations : Disallowing user-supplied system call operations
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Create time
Creating block mesh from
"/public21/home/sc1/bxy/tpdf/pdfFoam-master/tutorials/SandiaD/constant/polyMesh/blockMeshDict"
Creating curved edges
Creating topology blocks
Creating topology patches
Reading patches section
Creating block mesh topology
Reading physicalType from existing boundary file
Default patch type set to empty
Check topology
Basic statistics
Number of internal faces : 2
Number of boundary faces : 14
Number of defined boundary faces : 14
Number of undefined boundary faces : 0
Checking patch -> block consistency
Creating block offsets
Creating merge list .
Creating polyMesh from blockMesh
Creating patches
Creating cells
Creating points with scale 0.001
There are no merge patch pairs edges
Writing polyMesh
----------------
Mesh Information
----------------
boundingBox: (0 0.000149429 -0.0130734) (0.8 0.149429 0.0130734)
nPoints: 3850
nCells: 1836
nFaces: 7432
nInternalFaces: 3584
----------------
Patches
----------------
patch 0 (start: 3584 size: 1836) name: front
patch 1 (start: 5420 size: 1836) name: back
patch 2 (start: 7256 size: 8) name: jet
patch 3 (start: 7264 size: 6) name: pilot
patch 4 (start: 7270 size: 20) name: coflow
patch 5 (start: 7290 size: 54) name: outerWall
patch 6 (start: 7344 size: 34) name: outflow
patch 7 (start: 7378 size: 54) name: axis
End
log.pdfSimpleFoam
/*---------------------------------------------------------------------------*\
| ========= | |
| \\ / F ield | OpenFOAM: The Open Source CFD Toolbox |
| \\ / O peration | Version: 2.1.1 |
| \\ / A nd | Web: www.OpenFOAM.org |
| \\/ M anipulation | |
\*---------------------------------------------------------------------------*/
Build : 2.1.1-221db2718bbb
Exec : pdfSimpleFoam
Date : Dec 21 2023
Time : 14:03:40
Host : "y2215.para.bscc"
PID : 6842
Case : /public21/home/sc1/bxy/tpdf/pdfFoam-master/tutorials/SandiaD
nProcs : 1
sigFpe : Enabling floating point exception trapping (FOAM_SIGFPE).
fileModificationChecking : Monitoring run-time modified files using timeStampMaster
allowSystemOperations : Disallowing user-supplied system call operations
// * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * * //
Create time
Create mesh for time = 0
Reading field U
--> FOAM FATAL IO ERROR:
cannot find file
file: /public21/home/sc1/bxy/tpdf/pdfFoam-master/tutorials/SandiaD/constant/boundaryData/jet/points at line 0.
From function regIOobject::readStream()
in file db/regIOobject/regIOobjectRead.C at line 73.
FOAM exiting
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Thank you for your answer! In fact, I also want to do something just similar to you. I wanna learn and add this module to the project I am working on. It seems that I need to work harder : ). |
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May I ask if the code related to this part of your project can be made public? If possible, I would greatly appreciate it. If you think this is inappropriate, I apologize for my reckless behavior. |
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Yes, we can do that. But for that we have to modify the code.
…On Thu, Dec 21, 2023 at 12:40 PM Rockbeth ***@***.***> wrote:
May I ask if the code related to this part of your project can be made
public? If possible, I would greatly appreciate it. If you think this is
inappropriate, I apologize for my reckless behavior.
—
Reply to this email directly, view it on GitHub
<#2 (comment)>,
or unsubscribe
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--
*Regards*
*Naveen Kumar*
*Computational Fluid Dynamics Lab*
*PhD in Mechanical Engineering *
*IIT Roorkee, INDIA*
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If this doesn't disturb you, I am honored to have further communication and learning with you! I am a new graduate student from China, and this is my personal email. [email protected] |
Sorry to bother you! Would you mind if I refer to your code content? I really want to cooperate with you! |
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Sorry to bother you again. Unfortunately, I haven't solved this problem yet. Could I seek your help? |
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I had successfully installed the pdfFoam in OpenFOAM-2.1.x. I tried to run the default SandiaD case given in the tutorial of pdfFoam. The simulation is not running because some files are missed (SandiaD/constant/boundaryData/jet/points). I have attached the screenshots of the error shown while simulating the SadiaD case.
Please have a look. I am positively looking for your valuable inputs.
Error.pdf
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