- WikiPathways: WP4
- Scholia: WP4
- WPRDF file: wp/Human/WP4.ttl
- GPMLRDF file: wp/gpml/Human/WP4.ttl
- SBML file: sbml/WP4.sbml (SVG) (conversion notes)
- CASMetabolitesTests: all 2 tests OK!
- ChEBIMetabolitesTests: all 4 tests OK!
- ChemSpiderTests: all 2 tests OK!
- CovidDiseaseMapsTests
- interactionsWithoutReferences: .x we found 1 problem(s):
- missingHGNC: .. all OK!
- DataNodesTests
- dataNodesWithoutIdentifier: .x we found 1 problem(s):
- unknownTypes_knownDatasource: .. all OK!
- unknownTypes: .. all OK!
- unknownTypes_Reactome: .. all OK!
- EnsemblTests: all 5 tests OK!
- GeneralTests
- titlesShortEnough: .. all OK!
- weirdCharacterTitles: .. all OK!
- duplicateTitles: .. all OK!
- curationAndHypothetical: .. all OK!
- curationAndNeedsWork: .. all OK!
- curationAndReactome: .. all OK!
- noTags: .. all OK!
- nullDataSources: .. all OK!
- undefinedDataSources: .. all OK!
- undefinedIdentifier: .x we found 1 problem(s):
- emptyLabelOfNodeWithIdentifier: .. all OK!
- dataNodeWithoutGraphId: .. all OK!
- groupsHaveDetail: .. all OK!
- GeneTests: all 3 tests OK!
- HMDBMetabolitesTests: all 2 tests OK!
- HMDBSecMetabolitesTests: all 3 tests OK!
- InteractionTests: all 7 tests OK!
- KEGGMetaboliteTests: all 2 tests OK!
- LIPIDMAPSTests: all 1 tests OK!
- MetabolitesTests
- metaboliteAlsoOtherType: .. all OK!
- casNumbersNotMarkedAsMetabolite: .. all OK!
- chemspiderIDsNotMarkedAsMetabolite: .. all OK!
- HMDBIDsNotMarkedAsMetabolite: .. all OK!
- KEGGIDsNotMarkedAsMetabolite: .. all OK!
- metabolitesWithAnEnsembleID: .x we found 1 problem(s):
- metabolitesWithAnEntrezGeneID: .. all OK!
- metabolitesWithDbButNoIdentifier: .. all OK!
- metabolitesWithIdentifierButNoDb: .. all OK!
- ChEBIIDsNotMarkedAsMetabolite: .. all OK!
- PubChemIDsNotMarkedAsMetabolite: .. all OK!
- PubChemSubstanceIDsNotMarkedAsMetabolite: .. all OK!
- PubChemIDsNotNumbers: .. all OK!
- PubChemSubstanceIDsNotNumbers: .. all OK!
- MetaboliteStructureTests: all 2 tests OK!
- OudatedDataSourcesTests: all 7 tests OK!
- PathwayTests
- deletedPathways: .. all OK!
- linksToDeletedPathways: .. all OK!
- speciesMismatch: .. all OK!
- testRoundedRectangle: .x we found 1 problem(s):
- youMustCite: .. all OK!
- ProteinsTests: all 2 tests OK!
- PubChemMetabolitesTests: all 3 tests OK!
- ReferencesTests: all 3 tests OK!
- UniProtTests: all 4 tests OK!
- WikidataTests: all 14 tests OK!
- Number of test classes: 22
- Number of tests: 104
- Number of assertions: 210
- Number of fails: 5
Interactions without literature references: 4
http://www.wikipathways.org/instance/WP4.gp_r119193 -> http://rdf.wikipathways.org/Pathway/WP4.gp_r119193/ComplexBinding/aa28d
http://www.wikipathways.org/instance/WP4.gp_r119193 -> http://rdf.wikipathways.org/Pathway/WP4.gp_r119193/WP/Interaction/iddb017374
http://www.wikipathways.org/instance/WP4.gp_r119193 -> http://rdf.wikipathways.org/Pathway/WP4.gp_r119193/WP/Interaction/id1b82938b
http://www.wikipathways.org/instance/WP4.gp_r119193 -> http://rdf.wikipathways.org/Pathway/WP4.gp_r119193/WP/Interaction/idd31b36db
More details at https://wikipathways.github.io/WikiPathwaysCurator/CovidDiseaseMapsTests/interactionsWithoutReferences
The following DataNodes have no identifier: 3
http://www.wikipathways.org/instance/WP4.gp_r119193 http://rdf.wikipathways.org/Pathway/WP4.gp_r119193/DataNode/d6c00 (ATP)
http://www.wikipathways.org/instance/WP4.gp_r119193 http://rdf.wikipathways.org/Pathway/WP4.gp_r119193/DataNode/f9e19 (Alpha-D-Glucose)
http://www.wikipathways.org/instance/WP4.gp_r119193 http://rdf.wikipathways.org/Pathway/WP4.gp_r119193/DataNode/da9a8 (D-Glucose)
Data nodes with an 'undefined' identifier: 1
[["mb","homepage","label"],
["http://rdf.wikipathways.org/Pathway/WP4.gp_r119193/DataNode/a489f","http://www.wikipathways.org/instance/WP4.gp_r119193","Substrate é"]
]
Unexpected metabolites with an Ensemble identifier: 3
[["mb","label","identifier","pathway"],
["https://identifiers.org/ensembl/undefined","Substrate é","undefined","http://rdf.wikipathways.org/Pathway/WP4.gp_r119193/Complex/aa28d"],
["https://identifiers.org/ensembl/undefined","Substrate é","undefined","http://rdf.wikipathways.org/Pathway/WP4.gp_r119193/WP/Interaction/idd31b36db"],
["https://identifiers.org/ensembl/undefined","Substrate é","undefined","https://identifiers.org/wikipathways/WP4.gp_r119193"]
]
Pathways DataNodes with WikiPathways ID that can be converted to have a RoundedRectangle StyleType so that they become clickable: 1
http://www.wikipathways.org/instance/WP4.gp_r119193 -> d8bae, WP78