diff --git a/Documentation/Doxygen/Tutorial/Step09.dox b/Documentation/Doxygen/Tutorial/Step09.dox index f804f36bbab..616b1d1cf04 100644 --- a/Documentation/Doxygen/Tutorial/Step09.dox +++ b/Documentation/Doxygen/Tutorial/Step09.dox @@ -2,212 +2,71 @@ \page Step09Page MITK Tutorial - Step 9: A plug-in -MITK uses a very modular concept to maximize reusability and portability. You start an application (for example mitkWorkbench, the sample application provided by MITK). An application has several bundles (or plug-ins). A bundle can be a functionality, which in turn can be a view, each of these terms specifying certain behaviour and attributes. +MITK uses a very modular concept to maximize reusability and portability. A MITK application based on the BlueBerry +application framework (for example the MITK Workbench) consists of several bundles (or plug-ins). A bundle can contain +resources and program logic. It can also contribute so-called Views to the main application, which provide a specific +user interface for controlling the bundles functions. -The creation of a MITK plug-in is considerably facilitated by using the MITK BundleGenerator as described in \ref NewPluginPage . +The creation of a MITK plug-in is considerably facilitated by using the MITK PluginGenerator as described in \ref NewPluginPage . -The mentioned tool was used to create a plug-in QmitkRegionGrowing. -Let's first look at what files the BundleGenerator created: +The mentioned tool was used to create a plug-in called org.mitk.example.gui.regiongrowing. +Let's first look at what files the PluginGenerator created: \verbatim documentation\doxygen\ - modules.dox............................. Doxygen file for documenting your plug-in + modules.dox......................... Doxygen file for documenting your plug-in resources\ - icon.xpm................................ The icon of your plug-in. GIMP or other programs (including your text editor) - can be used to change this + icon.xpm............................ The icon of your plug-in. GIMP or other programs (including your text editor) + can be used to change this src\internal\ - QmitkMITKRegionGrowingView.cpp.......... The most important file, implementing behaviour - QmitkMITKRegionGrowingView.h............ Header file of the functionality - QmitkMITKRegionGrowingViewControls.ui... XML file of the Qt Designer, describes buttons, combo boxes, etc. of your controls + QmitkRegionGrowingView.cpp.......... The most important file, implementing behaviour + QmitkRegionGrowingView.h............ Header file of the functionality + QmitkRegionGrowingViewControls.ui... XML file of the Qt Designer, describes buttons, combo boxes, etc. of your controls -CMakeLists.txt \.......................... Build system related files for CMake +CMakeLists.txt \...................... Build system related files for CMake files.cmake / -manifest_headers.cmake.................... Information about your plug-in -plugin.xml ............................... BlueBerry integration +manifest_headers.cmake................ Information about your plug-in +plugin.xml ........................... BlueBerry integration \endverbatim If you are not familiar with Qt development, please look into -this Trolltech page describing .ui files (no, forget about the please, DO it!) +this Digia page describing .ui files (no, forget about the please, DO it!) The C++ files implement a subclass of QmitkAbstractView. In this special case of QmitkRegionGrowing, we added the ability to set some seed points and run a region grower. If you are interested in the concrete changes necessary to turn a freshly generated QmitkRegionGrowing into an integrated one: -Since an access to the StdMultiWidget is needed, manifest_headers.cmake has to be edited: -\verbatim -set(Require-Plugin org.mitk.gui.qt.common org.mitk.gui.qt.stdmultiwidgeteditor) -\endverbatim - -To add a PointSet for the seed points: +To add a mitk::PointSet for the seed points: QmitkRegionGrowingView.h -Add includes: -\verbatim -#include "QmitkPointListWidget.h" -#include "QmitkStdMultiWidget.h" -#include "QmitkStdMultiWidgetEditor.h" -\endverbatim +Add includes and forward declarations: +\snippet QmitkRegionGrowingView.h includes -Add the point set as protected object and add Pointers for a QmitkPointListWidget and a QmitkStdMultiWidget: -\verbatim -/// \brief This is the actual seed point data object -mitk::PointSet::Pointer m_PointSet; - -QmitkPointListWidget* lstPoints; -QmitkStdMultiWidget* m_MultiWidget; -\endverbatim +Add the point set and a pointer to a QmitkPointListWidget as a private member: +\snippet QmitkRegionGrowingView.h members QmitkRegionGrowingView.cpp CreateQtPartControl(): -\verbatim -// create a QmitkPointListWidget and add it to the widget created from .ui file -lstPoints = new QmitkPointListWidget(); -m_Controls.verticalLayout->addWidget(lstPoints); - -// get access to StdMultiWidget by using RenderWindowPart -QmitkStdMultiWidgetEditor* qSMWE = dynamic_cast(GetRenderWindowPart()); -m_MultiWidget = qSMWE->GetStdMultiWidget(); - -// let the point set widget know about the multi widget (crosshair updates) -lstPoints->SetMultiWidget( m_MultiWidget ); - -// create a new DataTreeNode containing a PointSet with some interaction -m_PointSet = mitk::PointSet::New(); - -mitk::DataNode::Pointer pointSetNode = mitk::DataNode::New(); -pointSetNode->SetData( m_PointSet ); -pointSetNode->SetName("seed points for region growing"); -pointSetNode->SetProperty("helper object", mitk::BoolProperty::New(true) ); -pointSetNode->SetProperty("layer", mitk::IntProperty::New(1024) ); - -// add the pointset to the data tree (for rendering and access by other modules) -GetDataStorage()->Add( pointSetNode ); - -// tell the GUI widget about out point set -lstPoints->SetPointSetNode( pointSetNode ); -\endverbatim +\snippet QmitkRegionGrowingView.cpp cpp-createqtpartcontrol To use the ITK region grower: QmitkRegionGrowingView.h -Add protected method: -\verbatim -/*! -\brief ITK image processing function - This function is templated like an ITK image. The MITK-Macro AccessByItk determines the actual pixel type and dimensionality of - a given MITK image and calls this function for further processing (in our case region growing) -*/ -template < typename TPixel, unsigned int VImageDimension > - void ItkImageProcessing( itk::Image< TPixel, VImageDimension >* itkImage, mitk::Geometry3D* imageGeometry ); -\endverbatim +Add the private method: +\snippet QmitkRegionGrowingView.h itkimageprocessing QmitkRegionGrowingView.cpp Add includes: -\verbatim -// MITK -#include "mitkImageAccessByItk.h" -#include "mitkITKImageImport.h" -#include "mitkProperties.h" -#include "mitkColorProperty.h" - -// ITK -#include +\snippet QmitkRegionGrowingView.cpp cpp-includes -\endverbatim - -DoImageProcessing(); -\verbatim -// So we have an image. Let's see if the user has set some seed points already -if ( m_PointSet->GetSize() == 0 ) -{ - // no points there. Not good for region growing - QMessageBox::information( NULL, "Region growing functionality", - "Please set some seed points inside the image first.\n" - "(hold Shift key and click left mouse button inside the image.)" - ); - return; -} - -// actually perform region growing. Here we have both an image and some seed points -AccessByItk_1( image, ItkImageProcessing, image->GetGeometry() ); // some magic to call the correctly templated function -\endverbatim +DoImageProcessing(): +\snippet QmitkRegionGrowingView.cpp cpp-doimageprocessing And add the new method: -\verbatim -template < typename TPixel, unsigned int VImageDimension > -void QmitkRegionGrowingView::ItkImageProcessing( itk::Image< TPixel, VImageDimension >* itkImage, mitk::Geometry3D* imageGeometry ) -{ - typedef itk::Image< TPixel, VImageDimension > InputImageType; - typedef typename InputImageType::IndexType IndexType; - - // instantiate an ITK region growing filter, set its parameters - typedef itk::ConnectedThresholdImageFilter RegionGrowingFilterType; - typename RegionGrowingFilterType::Pointer regionGrower = RegionGrowingFilterType::New(); - regionGrower->SetInput( itkImage ); // don't forget this - - // determine a thresholding interval - IndexType seedIndex; - TPixel min( std::numeric_limits::max() ); - TPixel max( std::numeric_limits::min() ); - mitk::PointSet::PointsContainer* points = m_PointSet->GetPointSet()->GetPoints(); - for ( mitk::PointSet::PointsConstIterator pointsIterator = points->Begin(); - pointsIterator != points->End(); - ++pointsIterator ) - { - // first test if this point is inside the image at all - if ( !imageGeometry->IsInside( pointsIterator.Value()) ) - { - continue; - } - - // convert world coordinates to image indices - imageGeometry->WorldToIndex( pointsIterator.Value(), seedIndex); - - // get the pixel value at this point - TPixel currentPixelValue = itkImage->GetPixel( seedIndex ); - - // adjust minimum and maximum values - if (currentPixelValue > max) - max = currentPixelValue; - - if (currentPixelValue < min) - min = currentPixelValue; - - regionGrower->AddSeed( seedIndex ); - } - - MITK_INFO << "Values between " << min << " and " << max; - - min -= 30; - max += 30; - - // set thresholds and execute filter - regionGrower->SetLower( min ); - regionGrower->SetUpper( max ); - - regionGrower->Update(); - - mitk::Image::Pointer resultImage = mitk::ImportItkImage( regionGrower->GetOutput() ); - mitk::DataNode::Pointer newNode = mitk::DataNode::New(); - newNode->SetData( resultImage ); - - // set some properties - newNode->SetProperty("binary", mitk::BoolProperty::New(true)); - newNode->SetProperty("name", mitk::StringProperty::New("dumb segmentation")); - newNode->SetProperty("color", mitk::ColorProperty::New(1.0,0.0,0.0)); - newNode->SetProperty("volumerendering", mitk::BoolProperty::New(true)); - newNode->SetProperty("layer", mitk::IntProperty::New(1)); - newNode->SetProperty("opacity", mitk::FloatProperty::New(0.5)); - - // add result to data tree - this->GetDataStorage()->Add( newNode ); - mitk::RenderingManager::GetInstance()->RequestUpdateAll(); -} - -\endverbatim +\snippet QmitkRegionGrowingView.cpp cpp-itkimageaccess Have fun using MITK! diff --git a/Examples/Plugins/PluginList.cmake b/Examples/Plugins/PluginList.cmake index b29ba568323..ceb74aeddee 100644 --- a/Examples/Plugins/PluginList.cmake +++ b/Examples/Plugins/PluginList.cmake @@ -11,4 +11,5 @@ set(MITK_EXAMPLE_PLUGINS org.mitk.example.gui.selectionservicemitk.views:ON org.mitk.example.gui.extensionpointdefinition:ON org.mitk.example.gui.extensionpointcontribution:ON + org.mitk.example.gui.regiongrowing:ON ) diff --git a/Examples/Plugins/org.mitk.example.gui.regiongrowing/CMakeLists.txt b/Examples/Plugins/org.mitk.example.gui.regiongrowing/CMakeLists.txt new file mode 100644 index 00000000000..315f17997a5 --- /dev/null +++ b/Examples/Plugins/org.mitk.example.gui.regiongrowing/CMakeLists.txt @@ -0,0 +1,7 @@ +project(org_mitk_example_gui_regiongrowing) + +MACRO_CREATE_MITK_CTK_PLUGIN( + EXPORT_DIRECTIVE REGIONGROWING_EXPORT + EXPORTED_INCLUDE_SUFFIXES src + MODULE_DEPENDENCIES QmitkExt +) diff --git a/Examples/Plugins/org.mitk.example.gui.regiongrowing/documentation/UserManual/Manual.dox b/Examples/Plugins/org.mitk.example.gui.regiongrowing/documentation/UserManual/Manual.dox new file mode 100644 index 00000000000..b81d4f1a265 --- /dev/null +++ b/Examples/Plugins/org.mitk.example.gui.regiongrowing/documentation/UserManual/Manual.dox @@ -0,0 +1,18 @@ +/** +\page org_mitk_example_gui_regiongrowing Region Grower Example + +\image html icon.xpm "Icon of Region Grower Example" + +Available sections: + - \ref org_mitk_example_gui_regiongrowingOverview + +\section org_mitk_example_gui_regiongrowingOverview +Describe the features of your awesome plugin here +
    +
  • Increases productivity +
  • Creates beautiful images +
  • Generates PhD thesis +
  • Brings world peace +
+ +*/ diff --git a/Examples/Plugins/org.mitk.example.gui.regiongrowing/documentation/UserManual/icon.xpm b/Examples/Plugins/org.mitk.example.gui.regiongrowing/documentation/UserManual/icon.xpm new file mode 100644 index 00000000000..9057c20bc6a --- /dev/null +++ b/Examples/Plugins/org.mitk.example.gui.regiongrowing/documentation/UserManual/icon.xpm @@ -0,0 +1,21 @@ +/* XPM */ +static const char * icon_xpm[] = { +"16 16 2 1", +" c #FF0000", +". c #000000", +" ", +" ", +" ", +" ", +" ", +" ", +" ", +" ", +" ", +" ", +" ", +" ", +" ", +" ", +" ", +" "}; diff --git a/Examples/Plugins/org.mitk.example.gui.regiongrowing/documentation/doxygen/modules.dox b/Examples/Plugins/org.mitk.example.gui.regiongrowing/documentation/doxygen/modules.dox new file mode 100644 index 00000000000..22b3a366c0f --- /dev/null +++ b/Examples/Plugins/org.mitk.example.gui.regiongrowing/documentation/doxygen/modules.dox @@ -0,0 +1,16 @@ +/** + \defgroup org_mitk_example_gui_regiongrowing org.mitk.example.gui.regiongrowing + \ingroup MITKPlugins + + \brief Describe your plugin here. + +*/ + +/** + \defgroup org_mitk_example_gui_regiongrowing_internal Internal + \ingroup org_mitk_example_gui_regiongrowing + + \brief This subcategory includes the internal classes of the org.mitk.example.gui.regiongrowing plugin. Other + plugins must not rely on these classes. They contain implementation details and their interface + may change at any time. We mean it. +*/ diff --git a/Examples/Plugins/org.mitk.example.gui.regiongrowing/files.cmake b/Examples/Plugins/org.mitk.example.gui.regiongrowing/files.cmake new file mode 100644 index 00000000000..527fc948ccd --- /dev/null +++ b/Examples/Plugins/org.mitk.example.gui.regiongrowing/files.cmake @@ -0,0 +1,42 @@ +set(SRC_CPP_FILES + +) + +set(INTERNAL_CPP_FILES + org_mitk_example_gui_regiongrowing_Activator.cpp + QmitkRegionGrowingView.cpp +) + +set(UI_FILES + src/internal/QmitkRegionGrowingViewControls.ui +) + +set(MOC_H_FILES + src/internal/org_mitk_example_gui_regiongrowing_Activator.h + src/internal/QmitkRegionGrowingView.h +) + +# list of resource files which can be used by the plug-in +# system without loading the plug-ins shared library, +# for example the icon used in the menu and tabs for the +# plug-in views in the workbench +set(CACHED_RESOURCE_FILES + resources/icon.xpm + plugin.xml +) + +# list of Qt .qrc files which contain additional resources +# specific to this plugin +set(QRC_FILES + +) + +set(CPP_FILES ) + +foreach(file ${SRC_CPP_FILES}) + set(CPP_FILES ${CPP_FILES} src/${file}) +endforeach(file ${SRC_CPP_FILES}) + +foreach(file ${INTERNAL_CPP_FILES}) + set(CPP_FILES ${CPP_FILES} src/internal/${file}) +endforeach(file ${INTERNAL_CPP_FILES}) diff --git a/Examples/Plugins/org.mitk.example.gui.regiongrowing/manifest_headers.cmake b/Examples/Plugins/org.mitk.example.gui.regiongrowing/manifest_headers.cmake new file mode 100644 index 00000000000..6698c3c0ec3 --- /dev/null +++ b/Examples/Plugins/org.mitk.example.gui.regiongrowing/manifest_headers.cmake @@ -0,0 +1,5 @@ +set(Plugin-Name "Region Grower Example") +set(Plugin-Version "0.1") +set(Plugin-Vendor "DKFZ, Medical and Biological Informatics") +set(Plugin-ContactAddress "") +set(Require-Plugin org.mitk.gui.qt.common) diff --git a/Examples/Plugins/org.mitk.example.gui.regiongrowing/plugin.xml b/Examples/Plugins/org.mitk.example.gui.regiongrowing/plugin.xml new file mode 100644 index 00000000000..2ce18af7c82 --- /dev/null +++ b/Examples/Plugins/org.mitk.example.gui.regiongrowing/plugin.xml @@ -0,0 +1,11 @@ + + + + + + + + diff --git a/Examples/Plugins/org.mitk.example.gui.regiongrowing/resources/icon.xpm b/Examples/Plugins/org.mitk.example.gui.regiongrowing/resources/icon.xpm new file mode 100644 index 00000000000..9057c20bc6a --- /dev/null +++ b/Examples/Plugins/org.mitk.example.gui.regiongrowing/resources/icon.xpm @@ -0,0 +1,21 @@ +/* XPM */ +static const char * icon_xpm[] = { +"16 16 2 1", +" c #FF0000", +". c #000000", +" ", +" ", +" ", +" ", +" ", +" ", +" ", +" ", +" ", +" ", +" ", +" ", +" ", +" ", +" ", +" "}; diff --git a/Examples/Plugins/org.mitk.example.gui.regiongrowing/src/internal/QmitkRegionGrowingView.cpp b/Examples/Plugins/org.mitk.example.gui.regiongrowing/src/internal/QmitkRegionGrowingView.cpp new file mode 100644 index 00000000000..fd5e271e720 --- /dev/null +++ b/Examples/Plugins/org.mitk.example.gui.regiongrowing/src/internal/QmitkRegionGrowingView.cpp @@ -0,0 +1,240 @@ +/*=================================================================== + +The Medical Imaging Interaction Toolkit (MITK) + +Copyright (c) German Cancer Research Center, +Division of Medical and Biological Informatics. +All rights reserved. + +This software is distributed WITHOUT ANY WARRANTY; without +even the implied warranty of MERCHANTABILITY or FITNESS FOR +A PARTICULAR PURPOSE. + +See LICENSE.txt or http://www.mitk.org for details. + +===================================================================*/ + + +// Blueberry +#include +#include + +// Qmitk +#include "QmitkRegionGrowingView.h" + +//! [cpp-includes] +// Qmitk +#include "QmitkPointListWidget.h" +#include "QmitkRenderWindow.h" + +// MITK +#include "mitkImageAccessByItk.h" +#include "mitkITKImageImport.h" +#include "mitkProperties.h" +#include "mitkColorProperty.h" + +// ITK +#include +//! [cpp-includes] + +// Qt +#include + + +const std::string QmitkRegionGrowingView::VIEW_ID = "org.mitk.views.example.regiongrowing"; + +QmitkRegionGrowingView::QmitkRegionGrowingView() + : m_PointListWidget(NULL) +{ +} + +void QmitkRegionGrowingView::SetFocus() +{ + m_Controls.buttonPerformImageProcessing->setFocus(); +} + +void QmitkRegionGrowingView::CreateQtPartControl( QWidget *parent ) +{ + // create GUI widgets from the Qt Designer's .ui file + m_Controls.setupUi( parent ); + connect( m_Controls.buttonPerformImageProcessing, SIGNAL(clicked()), this, SLOT(DoImageProcessing()) ); + + //! [cpp-createqtpartcontrol] + // create a QmitkPointListWidget and add it to the widget created from .ui file + m_PointListWidget = new QmitkPointListWidget(); + m_Controls.verticalLayout->addWidget(m_PointListWidget, 1); + + // retrieve a possibly existing IRenderWindowPart + if (mitk::IRenderWindowPart* renderWindowPart = GetRenderWindowPart()) + { + // let the point set widget know about the render window part (crosshair updates) + RenderWindowPartActivated(renderWindowPart); + } + + // create a new DataNode containing a PointSet with some interaction + m_PointSet = mitk::PointSet::New(); + mitk::DataNode::Pointer pointSetNode = mitk::DataNode::New(); + pointSetNode->SetData( m_PointSet ); + pointSetNode->SetName("seed points for region growing"); + pointSetNode->SetProperty("helper object", mitk::BoolProperty::New(true) ); + pointSetNode->SetProperty("layer", mitk::IntProperty::New(1024) ); + + // add the pointset to the data storage (for rendering and access by other modules) + GetDataStorage()->Add( pointSetNode ); + + // tell the GUI widget about the point set + m_PointListWidget->SetPointSetNode( pointSetNode ); + //! [cpp-createqtpartcontrol] +} + +void QmitkRegionGrowingView::OnSelectionChanged( berry::IWorkbenchPart::Pointer /*source*/, + const QList& nodes ) +{ + // iterate all selected objects, adjust warning visibility + foreach( mitk::DataNode::Pointer node, nodes ) + { + if( node.IsNotNull() && dynamic_cast(node->GetData()) ) + { + m_Controls.labelWarning->setVisible( false ); + m_Controls.buttonPerformImageProcessing->setEnabled( true ); + return; + } + } + + m_Controls.labelWarning->setVisible( true ); + m_Controls.buttonPerformImageProcessing->setEnabled( false ); +} + +void QmitkRegionGrowingView::RenderWindowPartActivated(mitk::IRenderWindowPart* renderWindowPart) +{ + // let the point set widget know about the slice navigation controllers + // in the active render window part (crosshair updates) + foreach(QmitkRenderWindow* renderWindow, renderWindowPart->GetQmitkRenderWindows().values()) + { + m_PointListWidget->AddSliceNavigationController(renderWindow->GetSliceNavigationController()); + } +} + +void QmitkRegionGrowingView::RenderWindowPartDeactivated(mitk::IRenderWindowPart* renderWindowPart) +{ + foreach(QmitkRenderWindow* renderWindow, renderWindowPart->GetQmitkRenderWindows().values()) + { + m_PointListWidget->RemoveSliceNavigationController(renderWindow->GetSliceNavigationController()); + } +} + +void QmitkRegionGrowingView::DoImageProcessing() +{ + QList nodes = this->GetDataManagerSelection(); + if (nodes.empty()) return; + + mitk::DataNode* node = nodes.front(); + + if (!node) + { + // Nothing selected. Inform the user and return + QMessageBox::information( NULL, "Template", "Please load and select an image before starting image processing."); + return; + } + + // here we have a valid mitk::DataNode + + // a node itself is not very useful, we need its data item (the image) + mitk::BaseData* data = node->GetData(); + if (data) + { + // test if this data item is an image or not (could also be a surface or something totally different) + mitk::Image* image = dynamic_cast( data ); + if (image) + { + //! [cpp-doimageprocessing] + // So we have an image. Let's see if the user has set some seed points already + if (m_PointSet->GetSize() == 0) + { + // no points there. Not good for region growing + QMessageBox::information( NULL, + "Region growing functionality", + "Please set some seed points inside the image first.\n" + "(hold Shift key and click left mouse button inside the image.)" + ); + return; + } + + // actually perform region growing. Here we have both an image and some seed points + AccessByItk_1( image, ItkImageProcessing, image->GetGeometry() ) // some magic to call the correctly templated function + //! [cpp-doimageprocessing] + } + } +} + +//! [cpp-itkimageaccess] +template < typename TPixel, unsigned int VImageDimension > +void QmitkRegionGrowingView::ItkImageProcessing( itk::Image< TPixel, VImageDimension >* itkImage, mitk::Geometry3D* imageGeometry ) +{ + typedef itk::Image< TPixel, VImageDimension > InputImageType; + typedef typename InputImageType::IndexType IndexType; + + // instantiate an ITK region growing filter, set its parameters + typedef itk::ConnectedThresholdImageFilter RegionGrowingFilterType; + typename RegionGrowingFilterType::Pointer regionGrower = RegionGrowingFilterType::New(); + regionGrower->SetInput( itkImage ); // don't forget this + + // determine a thresholding interval + IndexType seedIndex; + TPixel min( std::numeric_limits::max() ); + TPixel max( std::numeric_limits::min() ); + mitk::PointSet::PointsContainer* points = m_PointSet->GetPointSet()->GetPoints(); + for ( mitk::PointSet::PointsConstIterator pointsIterator = points->Begin(); + pointsIterator != points->End(); + ++pointsIterator ) + { + // first test if this point is inside the image at all + if ( !imageGeometry->IsInside( pointsIterator.Value()) ) + { + continue; + } + + // convert world coordinates to image indices + imageGeometry->WorldToIndex( pointsIterator.Value(), seedIndex); + + // get the pixel value at this point + TPixel currentPixelValue = itkImage->GetPixel( seedIndex ); + + // adjust minimum and maximum values + if (currentPixelValue > max) + max = currentPixelValue; + + if (currentPixelValue < min) + min = currentPixelValue; + + regionGrower->AddSeed( seedIndex ); + } + + MITK_INFO << "Values between " << min << " and " << max; + + min -= 30; + max += 30; + + // set thresholds and execute filter + regionGrower->SetLower( min ); + regionGrower->SetUpper( max ); + + regionGrower->Update(); + + mitk::Image::Pointer resultImage = mitk::ImportItkImage( regionGrower->GetOutput() ); + mitk::DataNode::Pointer newNode = mitk::DataNode::New(); + newNode->SetData( resultImage ); + + // set some properties + newNode->SetProperty("binary", mitk::BoolProperty::New(true)); + newNode->SetProperty("name", mitk::StringProperty::New("dumb segmentation")); + newNode->SetProperty("color", mitk::ColorProperty::New(1.0,0.0,0.0)); + newNode->SetProperty("volumerendering", mitk::BoolProperty::New(true)); + newNode->SetProperty("layer", mitk::IntProperty::New(1)); + newNode->SetProperty("opacity", mitk::FloatProperty::New(0.5)); + + // add result to data tree + this->GetDataStorage()->Add( newNode ); + mitk::RenderingManager::GetInstance()->RequestUpdateAll(); +} +//! [cpp-itkimageaccess] diff --git a/Examples/Plugins/org.mitk.example.gui.regiongrowing/src/internal/QmitkRegionGrowingView.h b/Examples/Plugins/org.mitk.example.gui.regiongrowing/src/internal/QmitkRegionGrowingView.h new file mode 100644 index 00000000000..2f5c998088f --- /dev/null +++ b/Examples/Plugins/org.mitk.example.gui.regiongrowing/src/internal/QmitkRegionGrowingView.h @@ -0,0 +1,97 @@ +/*=================================================================== + +The Medical Imaging Interaction Toolkit (MITK) + +Copyright (c) German Cancer Research Center, +Division of Medical and Biological Informatics. +All rights reserved. + +This software is distributed WITHOUT ANY WARRANTY; without +even the implied warranty of MERCHANTABILITY or FITNESS FOR +A PARTICULAR PURPOSE. + +See LICENSE.txt or http://www.mitk.org for details. + +===================================================================*/ + + +#ifndef QmitkRegionGrowingView_h +#define QmitkRegionGrowingView_h + +#include + +#include + +#include "ui_QmitkRegionGrowingViewControls.h" + +//! [includes] +#include "mitkPointSet.h" +#include "mitkIRenderWindowPartListener.h" + +class QmitkPointListWidget; +//! [includes] + +/** + \brief QmitkRegionGrowingView + + \warning This class is not yet documented. Use "git blame" and ask the author to provide basic documentation. + + \sa QmitkAbstractView + \ingroup ${plugin_target}_internal +*/ +class QmitkRegionGrowingView : public QmitkAbstractView, public mitk::IRenderWindowPartListener +{ + // this is needed for all Qt objects that should have a Qt meta-object + // (everything that derives from QObject and wants to have signal/slots) + Q_OBJECT + + public: + + static const std::string VIEW_ID; + + QmitkRegionGrowingView(); + + protected slots: + + /// \brief Called when the user clicks the GUI button + void DoImageProcessing(); + + protected: + + virtual void CreateQtPartControl(QWidget *parent); + + virtual void SetFocus(); + + /// \brief called by QmitkFunctionality when DataManager's selection has changed + virtual void OnSelectionChanged( berry::IWorkbenchPart::Pointer source, + const QList& nodes ); + + //! [render-window-part-listener] + void RenderWindowPartActivated(mitk::IRenderWindowPart* renderWindowPart); + void RenderWindowPartDeactivated(mitk::IRenderWindowPart* renderWindowPart); + //! [render-window-part-listener] + + Ui::QmitkRegionGrowingViewControls m_Controls; + + private: + + //! [itkimageprocessing] + /** + \brief ITK image processing function + This function is templated like an ITK image. The MITK-Macro AccessByItk determines the actual pixel type and dimensionality of + a given MITK image and calls this function for further processing (in our case region growing) + */ + template < typename TPixel, unsigned int VImageDimension > + void ItkImageProcessing( itk::Image< TPixel, VImageDimension >* itkImage, mitk::Geometry3D* imageGeometry ); + //! [itkimageprocessing] + + //! [members] + /// \brief This is the actual seed point data object + mitk::PointSet::Pointer m_PointSet; + + QmitkPointListWidget* m_PointListWidget; + //! [members] + +}; + +#endif // QmitkRegionGrowingView_h diff --git a/Examples/Plugins/org.mitk.example.gui.regiongrowing/src/internal/QmitkRegionGrowingViewControls.ui b/Examples/Plugins/org.mitk.example.gui.regiongrowing/src/internal/QmitkRegionGrowingViewControls.ui new file mode 100644 index 00000000000..af93c6a8aa3 --- /dev/null +++ b/Examples/Plugins/org.mitk.example.gui.regiongrowing/src/internal/QmitkRegionGrowingViewControls.ui @@ -0,0 +1,48 @@ + + + QmitkRegionGrowingViewControls + + + + 0 + 0 + 222 + 161 + + + + + 0 + 0 + + + + QmitkTemplate + + + + + + QLabel { color: rgb(255, 0, 0) } + + + Please select an image! + + + + + + + Do image processing + + + Do Something + + + + + + + + + diff --git a/Examples/Plugins/org.mitk.example.gui.regiongrowing/src/internal/org_mitk_example_gui_regiongrowing_Activator.cpp b/Examples/Plugins/org.mitk.example.gui.regiongrowing/src/internal/org_mitk_example_gui_regiongrowing_Activator.cpp new file mode 100644 index 00000000000..a0d3863e2ec --- /dev/null +++ b/Examples/Plugins/org.mitk.example.gui.regiongrowing/src/internal/org_mitk_example_gui_regiongrowing_Activator.cpp @@ -0,0 +1,38 @@ +/*=================================================================== + +The Medical Imaging Interaction Toolkit (MITK) + +Copyright (c) German Cancer Research Center, +Division of Medical and Biological Informatics. +All rights reserved. + +This software is distributed WITHOUT ANY WARRANTY; without +even the implied warranty of MERCHANTABILITY or FITNESS FOR +A PARTICULAR PURPOSE. + +See LICENSE.txt or http://www.mitk.org for details. + +===================================================================*/ + + +#include "org_mitk_example_gui_regiongrowing_Activator.h" + +#include + +#include "QmitkRegionGrowingView.h" + +namespace mitk { + +void org_mitk_example_gui_regiongrowing_Activator::start(ctkPluginContext* context) +{ + BERRY_REGISTER_EXTENSION_CLASS(QmitkRegionGrowingView, context) +} + +void org_mitk_example_gui_regiongrowing_Activator::stop(ctkPluginContext* context) +{ + Q_UNUSED(context) +} + +} + +Q_EXPORT_PLUGIN2(org_mitk_example_gui_regiongrowing, mitk::org_mitk_example_gui_regiongrowing_Activator) diff --git a/Examples/Plugins/org.mitk.example.gui.regiongrowing/src/internal/org_mitk_example_gui_regiongrowing_Activator.h b/Examples/Plugins/org.mitk.example.gui.regiongrowing/src/internal/org_mitk_example_gui_regiongrowing_Activator.h new file mode 100644 index 00000000000..29d561d6f54 --- /dev/null +++ b/Examples/Plugins/org.mitk.example.gui.regiongrowing/src/internal/org_mitk_example_gui_regiongrowing_Activator.h @@ -0,0 +1,40 @@ +/*=================================================================== + +The Medical Imaging Interaction Toolkit (MITK) + +Copyright (c) German Cancer Research Center, +Division of Medical and Biological Informatics. +All rights reserved. + +This software is distributed WITHOUT ANY WARRANTY; without +even the implied warranty of MERCHANTABILITY or FITNESS FOR +A PARTICULAR PURPOSE. + +See LICENSE.txt or http://www.mitk.org for details. + +===================================================================*/ + + +#ifndef org_mitk_example_gui_regiongrowing_Activator_h +#define org_mitk_example_gui_regiongrowing_Activator_h + +#include + +namespace mitk { + +class org_mitk_example_gui_regiongrowing_Activator : + public QObject, public ctkPluginActivator +{ + Q_OBJECT + Q_INTERFACES(ctkPluginActivator) + +public: + + void start(ctkPluginContext* context); + void stop(ctkPluginContext* context); + +}; // org_mitk_example_gui_regiongrowing_Activator + +} + +#endif // org_mitk_example_gui_regiongrowing_Activator_h