From e0ff34c9b395d19e2e726bc562128481157d4196 Mon Sep 17 00:00:00 2001
From: Levi Waldron <lwaldron.research@gmail.com>
Date: Fri, 17 May 2024 17:48:26 -0700
Subject: [PATCH] get rid of codecov because it isn't working :O

---
 .github/workflows/test-coverage.yaml | 61 ----------------------------
 README.md                            |  1 -
 index.md                             |  1 -
 3 files changed, 63 deletions(-)
 delete mode 100644 .github/workflows/test-coverage.yaml

diff --git a/.github/workflows/test-coverage.yaml b/.github/workflows/test-coverage.yaml
deleted file mode 100644
index 572b3f1..0000000
--- a/.github/workflows/test-coverage.yaml
+++ /dev/null
@@ -1,61 +0,0 @@
-# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
-# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
-on:
-  push:
-    branches: [devel]
-  pull_request:
-    branches: [devel]
-
-name: test-coverage
-
-permissions: read-all
-
-jobs:
-  test-coverage:
-    runs-on: ubuntu-latest
-    env:
-      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-
-    steps:
-      - uses: actions/checkout@v4
-
-      - uses: r-lib/actions/setup-r@v2
-        with:
-          use-public-rspm: true
-
-      - uses: r-lib/actions/setup-r-dependencies@v2
-        with:
-          extra-packages: any::covr, any::xml2
-          needs: coverage
-
-      - name: Test coverage
-        run: |
-          cov <- covr::package_coverage(
-            quiet = FALSE,
-            clean = FALSE,
-            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
-          )
-          covr::to_cobertura(cov)
-        shell: Rscript {0}
-
-      - uses: codecov/codecov-action@v4
-        with:
-          fail_ci_if_error: ${{ github.event_name != 'pull_request' && true || false }}
-          file: ./cobertura.xml
-          plugin: noop
-          disable_search: true
-          token: ${{ secrets.CODECOV_TOKEN }}
-
-      - name: Show testthat output
-        if: always()
-        run: |
-          ## --------------------------------------------------------------------
-          find '${{ runner.temp }}/package' -name 'testthat.Rout*' -exec cat '{}' \; || true
-        shell: bash
-
-      - name: Upload test results
-        if: failure()
-        uses: actions/upload-artifact@v4
-        with:
-          name: coverage-test-failures
-          path: ${{ runner.temp }}/package
diff --git a/README.md b/README.md
index 886e0ea..2dc26b5 100644
--- a/README.md
+++ b/README.md
@@ -1,6 +1,5 @@
 [![R build status](https://github.com/waldronlab/HGNChelper/workflows/R-CMD-check/badge.svg)](https://github.com/waldronlab/HGNChelper/actions)
 [![](https://cranlogs.r-pkg.org/badges/HGNChelper)](https://cran.r-project.org/package=HGNChelper)
-[![Coverage Status](https://codecov.io/github/waldronlab/HGNChelper/coverage.svg?branch=master)](https://codecov.io/github/waldronlab/HGNChelper?branch=master)
 [![DOI](https://zenodo.org/badge/139589811.svg)](https://zenodo.org/badge/latestdoi/139589811)
 
 
diff --git a/index.md b/index.md
index cbaf430..fed6cad 100644
--- a/index.md
+++ b/index.md
@@ -1,6 +1,5 @@
 [![R build status](https://github.com/waldronlab/HGNChelper/workflows/R-CMD-check/badge.svg)](https://github.com/waldronlab/HGNChelper/actions)
 [![](https://cranlogs.r-pkg.org/badges/HGNChelper)](https://cran.r-project.org/package=HGNChelper)
-[![Coverage Status](https://codecov.io/github/waldronlab/HGNChelper/coverage.svg?branch=master)](https://codecov.io/github/waldronlab/HGNChelper?branch=master)
 [![DOI](https://zenodo.org/badge/139589811.svg)](https://zenodo.org/badge/latestdoi/139589811)
 
 # HGNChelper: Identification and correction of invalid gene symbols for human and mouse