diff --git a/examples/HorizontalCell.py b/examples/HorizontalCell.py index fc3fbca..1d71008 100644 --- a/examples/HorizontalCell.py +++ b/examples/HorizontalCell.py @@ -203,7 +203,7 @@ mosaic = pattern.new_mosaic(scope=scope) mosaic, losses = pattern.simulate(mosaic=mosaic, interaction_func=h_func, features=None, schedule=AdaptiveSchedule(), - max_step=None, update_ratop=None, + max_step=None, update_ratio=None, save_prefix="examples/simulated/HC/Sample", save_step=500, verbose=True) mosaic.draw_points() diff --git a/scripts/parallel_simulate.py b/scripts/parallel_simulate.py index 6278fc9..5298424 100644 --- a/scripts/parallel_simulate.py +++ b/scripts/parallel_simulate.py @@ -3,7 +3,7 @@ # select the pattern from examples.HorizontalCell import pattern as HC from examples.HorizontalCell import scope, h_func -features = ["nn", "vd"] +features = ["NN", "VD"] # set output files save_prefix = "examples/simulated/HC/W1" # chose a random seed diff --git a/tutorial/estimate_inter_ps.md b/tutorial/estimate_inter_ps.md index 74e5296..c530c55 100644 --- a/tutorial/estimate_inter_ps.md +++ b/tutorial/estimate_inter_ps.md @@ -22,7 +22,7 @@ The estimation requires the [spatstat](https://spatstat.org/) libaray in [R](htt install.packages('spatstat') ``` -We recommend learning the basic of the `R` language for further usage. In this part, we suppose you know the basic of a retinal mosaic and the usage of the `OPIPP` module. Furthermore, you need to modify R scripts for your simulations. +Here, we suppose you know the basic of a retinal mosaic and the usage of the `OPIPP` module. Furthermore, you need to modify R scripts for your applications. Therefore, We recommend learning the basic of the `R` language for further usage. # Save points into local files