pgo.sht

#!/bin/sh

# Purpose:
# Make workspace 'temp' and then call ptest.
#
# > ptestx za.ia^zb.ib -d=temp -prm=matchparams.txt
#
# Options:
# -idb=idb0				;path to IDB
# -ima=path				;path to image a
# -imb=path				;path to image b
# -fma=path				;path to foldmask a
# -fmb=path				;path to foldmask b
# -clr					;erase current -d=temp
#
# {ima, imb, fma, fmb} override IDB.
#
# ptest Options:
# -jtilea=URL			;URL to tile-A JSON
# -jtileb=URL			;URL to tile-B JSON
# -prm=path				;path to matchparams.txt
# -Tdfm=1,0,0,0,1,0		;deformation a to b
# -Tab=1,0,0,0,1,0		;transform a to b
# -Ta=1,0,0,0,1,0		;alt Tab=Tb-inv * Ta
# -Tb=1,0,0,0,1,0		;alt Tab=Tb-inv * Ta
# -SCALE=1.0			;a/b
# -XSCALE=1.0			;a/b
# -YSCALE=1.0			;a/b
# -SKEW=0.0				;a/b (yskew)
# -FLD=%c				;Y=use, N=none, X=XL only
# -MODE=%c				;see matchparams.txt
# -CTR=0.0				;ang0
# -tr					;transpose
# -nf					;no folds (prefer -FLD=N)
# -sf					;single fold
# -Tmsh=1,0,0,0,1,0		;bypass thumbs, start mesh here
# -XYexp=0.0,0.0		;final mesh expected XY
# -json					;output JSON format
# -v					;registered & comp images
# -comp_png=path		;path to comp.png
# -registered_png=path	;path to registered.png
# -heatmap				;qual.tif
# -dbgcor				;stop at correlation images
#

ptestx 624.16^623.10 -ima=/groups/apig/tomo/BBB_107/temp/624/16/nmrc_624_16.png -imb=/groups/apig/tomo/BBB_107/temp/623/10/nmrc_623_10.png -clr -d=temp -prm=matchparams.txt -CTR=0