diff --git a/.classpath b/.classpath
new file mode 100755
index 0000000..1f4a216
--- /dev/null
+++ b/.classpath
@@ -0,0 +1,10 @@
+
+
+
+
+
+
+
+
+
+
diff --git a/.externalToolBuilders/New_Builder (1).launch b/.externalToolBuilders/New_Builder (1).launch
new file mode 100644
index 0000000..e0c0678
--- /dev/null
+++ b/.externalToolBuilders/New_Builder (1).launch
@@ -0,0 +1,15 @@
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
diff --git a/.gitignore b/.gitignore
new file mode 100644
index 0000000..685678b
--- /dev/null
+++ b/.gitignore
@@ -0,0 +1,3 @@
+bin/
+doc/
+Plugin_Telemicroscopia.jar
diff --git a/.project b/.project
new file mode 100644
index 0000000..82501f0
--- /dev/null
+++ b/.project
@@ -0,0 +1,27 @@
+
+
+ Plugin_Telemicroscopia
+
+
+
+
+
+ org.eclipse.jdt.core.javabuilder
+
+
+
+
+ org.eclipse.ui.externaltools.ExternalToolBuilder
+ auto,full,incremental,
+
+
+ LaunchConfigHandle
+ <project>/.externalToolBuilders/New_Builder (1).launch
+
+
+
+
+
+ org.eclipse.jdt.core.javanature
+
+
diff --git a/.settings/org.eclipse.jdt.core.prefs b/.settings/org.eclipse.jdt.core.prefs
new file mode 100644
index 0000000..7341ab1
--- /dev/null
+++ b/.settings/org.eclipse.jdt.core.prefs
@@ -0,0 +1,11 @@
+eclipse.preferences.version=1
+org.eclipse.jdt.core.compiler.codegen.inlineJsrBytecode=enabled
+org.eclipse.jdt.core.compiler.codegen.targetPlatform=1.7
+org.eclipse.jdt.core.compiler.codegen.unusedLocal=preserve
+org.eclipse.jdt.core.compiler.compliance=1.7
+org.eclipse.jdt.core.compiler.debug.lineNumber=generate
+org.eclipse.jdt.core.compiler.debug.localVariable=generate
+org.eclipse.jdt.core.compiler.debug.sourceFile=generate
+org.eclipse.jdt.core.compiler.problem.assertIdentifier=error
+org.eclipse.jdt.core.compiler.problem.enumIdentifier=error
+org.eclipse.jdt.core.compiler.source=1.7
diff --git a/LICENCSE.txt b/LICENCSE.txt
new file mode 100755
index 0000000..94a9ed0
--- /dev/null
+++ b/LICENCSE.txt
@@ -0,0 +1,674 @@
+ GNU GENERAL PUBLIC LICENSE
+ Version 3, 29 June 2007
+
+ Copyright (C) 2007 Free Software Foundation, Inc.
+ Everyone is permitted to copy and distribute verbatim copies
+ of this license document, but changing it is not allowed.
+
+ Preamble
+
+ The GNU General Public License is a free, copyleft license for
+software and other kinds of works.
+
+ The licenses for most software and other practical works are designed
+to take away your freedom to share and change the works. By contrast,
+the GNU General Public License is intended to guarantee your freedom to
+share and change all versions of a program--to make sure it remains free
+software for all its users. We, the Free Software Foundation, use the
+GNU General Public License for most of our software; it applies also to
+any other work released this way by its authors. You can apply it to
+your programs, too.
+
+ When we speak of free software, we are referring to freedom, not
+price. Our General Public Licenses are designed to make sure that you
+have the freedom to distribute copies of free software (and charge for
+them if you wish), that you receive source code or can get it if you
+want it, that you can change the software or use pieces of it in new
+free programs, and that you know you can do these things.
+
+ To protect your rights, we need to prevent others from denying you
+these rights or asking you to surrender the rights. Therefore, you have
+certain responsibilities if you distribute copies of the software, or if
+you modify it: responsibilities to respect the freedom of others.
+
+ For example, if you distribute copies of such a program, whether
+gratis or for a fee, you must pass on to the recipients the same
+freedoms that you received. You must make sure that they, too, receive
+or can get the source code. And you must show them these terms so they
+know their rights.
+
+ Developers that use the GNU GPL protect your rights with two steps:
+(1) assert copyright on the software, and (2) offer you this License
+giving you legal permission to copy, distribute and/or modify it.
+
+ For the developers' and authors' protection, the GPL clearly explains
+that there is no warranty for this free software. For both users' and
+authors' sake, the GPL requires that modified versions be marked as
+changed, so that their problems will not be attributed erroneously to
+authors of previous versions.
+
+ Some devices are designed to deny users access to install or run
+modified versions of the software inside them, although the manufacturer
+can do so. This is fundamentally incompatible with the aim of
+protecting users' freedom to change the software. The systematic
+pattern of such abuse occurs in the area of products for individuals to
+use, which is precisely where it is most unacceptable. Therefore, we
+have designed this version of the GPL to prohibit the practice for those
+products. If such problems arise substantially in other domains, we
+stand ready to extend this provision to those domains in future versions
+of the GPL, as needed to protect the freedom of users.
+
+ Finally, every program is threatened constantly by software patents.
+States should not allow patents to restrict development and use of
+software on general-purpose computers, but in those that do, we wish to
+avoid the special danger that patents applied to a free program could
+make it effectively proprietary. To prevent this, the GPL assures that
+patents cannot be used to render the program non-free.
+
+ The precise terms and conditions for copying, distribution and
+modification follow.
+
+ TERMS AND CONDITIONS
+
+ 0. Definitions.
+
+ "This License" refers to version 3 of the GNU General Public License.
+
+ "Copyright" also means copyright-like laws that apply to other kinds of
+works, such as semiconductor masks.
+
+ "The Program" refers to any copyrightable work licensed under this
+License. Each licensee is addressed as "you". "Licensees" and
+"recipients" may be individuals or organizations.
+
+ To "modify" a work means to copy from or adapt all or part of the work
+in a fashion requiring copyright permission, other than the making of an
+exact copy. The resulting work is called a "modified version" of the
+earlier work or a work "based on" the earlier work.
+
+ A "covered work" means either the unmodified Program or a work based
+on the Program.
+
+ To "propagate" a work means to do anything with it that, without
+permission, would make you directly or secondarily liable for
+infringement under applicable copyright law, except executing it on a
+computer or modifying a private copy. Propagation includes copying,
+distribution (with or without modification), making available to the
+public, and in some countries other activities as well.
+
+ To "convey" a work means any kind of propagation that enables other
+parties to make or receive copies. Mere interaction with a user through
+a computer network, with no transfer of a copy, is not conveying.
+
+ An interactive user interface displays "Appropriate Legal Notices"
+to the extent that it includes a convenient and prominently visible
+feature that (1) displays an appropriate copyright notice, and (2)
+tells the user that there is no warranty for the work (except to the
+extent that warranties are provided), that licensees may convey the
+work under this License, and how to view a copy of this License. If
+the interface presents a list of user commands or options, such as a
+menu, a prominent item in the list meets this criterion.
+
+ 1. Source Code.
+
+ The "source code" for a work means the preferred form of the work
+for making modifications to it. "Object code" means any non-source
+form of a work.
+
+ A "Standard Interface" means an interface that either is an official
+standard defined by a recognized standards body, or, in the case of
+interfaces specified for a particular programming language, one that
+is widely used among developers working in that language.
+
+ The "System Libraries" of an executable work include anything, other
+than the work as a whole, that (a) is included in the normal form of
+packaging a Major Component, but which is not part of that Major
+Component, and (b) serves only to enable use of the work with that
+Major Component, or to implement a Standard Interface for which an
+implementation is available to the public in source code form. A
+"Major Component", in this context, means a major essential component
+(kernel, window system, and so on) of the specific operating system
+(if any) on which the executable work runs, or a compiler used to
+produce the work, or an object code interpreter used to run it.
+
+ The "Corresponding Source" for a work in object code form means all
+the source code needed to generate, install, and (for an executable
+work) run the object code and to modify the work, including scripts to
+control those activities. However, it does not include the work's
+System Libraries, or general-purpose tools or generally available free
+programs which are used unmodified in performing those activities but
+which are not part of the work. For example, Corresponding Source
+includes interface definition files associated with source files for
+the work, and the source code for shared libraries and dynamically
+linked subprograms that the work is specifically designed to require,
+such as by intimate data communication or control flow between those
+subprograms and other parts of the work.
+
+ The Corresponding Source need not include anything that users
+can regenerate automatically from other parts of the Corresponding
+Source.
+
+ The Corresponding Source for a work in source code form is that
+same work.
+
+ 2. Basic Permissions.
+
+ All rights granted under this License are granted for the term of
+copyright on the Program, and are irrevocable provided the stated
+conditions are met. This License explicitly affirms your unlimited
+permission to run the unmodified Program. The output from running a
+covered work is covered by this License only if the output, given its
+content, constitutes a covered work. This License acknowledges your
+rights of fair use or other equivalent, as provided by copyright law.
+
+ You may make, run and propagate covered works that you do not
+convey, without conditions so long as your license otherwise remains
+in force. You may convey covered works to others for the sole purpose
+of having them make modifications exclusively for you, or provide you
+with facilities for running those works, provided that you comply with
+the terms of this License in conveying all material for which you do
+not control copyright. Those thus making or running the covered works
+for you must do so exclusively on your behalf, under your direction
+and control, on terms that prohibit them from making any copies of
+your copyrighted material outside their relationship with you.
+
+ Conveying under any other circumstances is permitted solely under
+the conditions stated below. Sublicensing is not allowed; section 10
+makes it unnecessary.
+
+ 3. Protecting Users' Legal Rights From Anti-Circumvention Law.
+
+ No covered work shall be deemed part of an effective technological
+measure under any applicable law fulfilling obligations under article
+11 of the WIPO copyright treaty adopted on 20 December 1996, or
+similar laws prohibiting or restricting circumvention of such
+measures.
+
+ When you convey a covered work, you waive any legal power to forbid
+circumvention of technological measures to the extent such circumvention
+is effected by exercising rights under this License with respect to
+the covered work, and you disclaim any intention to limit operation or
+modification of the work as a means of enforcing, against the work's
+users, your or third parties' legal rights to forbid circumvention of
+technological measures.
+
+ 4. Conveying Verbatim Copies.
+
+ You may convey verbatim copies of the Program's source code as you
+receive it, in any medium, provided that you conspicuously and
+appropriately publish on each copy an appropriate copyright notice;
+keep intact all notices stating that this License and any
+non-permissive terms added in accord with section 7 apply to the code;
+keep intact all notices of the absence of any warranty; and give all
+recipients a copy of this License along with the Program.
+
+ You may charge any price or no price for each copy that you convey,
+and you may offer support or warranty protection for a fee.
+
+ 5. Conveying Modified Source Versions.
+
+ You may convey a work based on the Program, or the modifications to
+produce it from the Program, in the form of source code under the
+terms of section 4, provided that you also meet all of these conditions:
+
+ a) The work must carry prominent notices stating that you modified
+ it, and giving a relevant date.
+
+ b) The work must carry prominent notices stating that it is
+ released under this License and any conditions added under section
+ 7. This requirement modifies the requirement in section 4 to
+ "keep intact all notices".
+
+ c) You must license the entire work, as a whole, under this
+ License to anyone who comes into possession of a copy. This
+ License will therefore apply, along with any applicable section 7
+ additional terms, to the whole of the work, and all its parts,
+ regardless of how they are packaged. This License gives no
+ permission to license the work in any other way, but it does not
+ invalidate such permission if you have separately received it.
+
+ d) If the work has interactive user interfaces, each must display
+ Appropriate Legal Notices; however, if the Program has interactive
+ interfaces that do not display Appropriate Legal Notices, your
+ work need not make them do so.
+
+ A compilation of a covered work with other separate and independent
+works, which are not by their nature extensions of the covered work,
+and which are not combined with it such as to form a larger program,
+in or on a volume of a storage or distribution medium, is called an
+"aggregate" if the compilation and its resulting copyright are not
+used to limit the access or legal rights of the compilation's users
+beyond what the individual works permit. Inclusion of a covered work
+in an aggregate does not cause this License to apply to the other
+parts of the aggregate.
+
+ 6. Conveying Non-Source Forms.
+
+ You may convey a covered work in object code form under the terms
+of sections 4 and 5, provided that you also convey the
+machine-readable Corresponding Source under the terms of this License,
+in one of these ways:
+
+ a) Convey the object code in, or embodied in, a physical product
+ (including a physical distribution medium), accompanied by the
+ Corresponding Source fixed on a durable physical medium
+ customarily used for software interchange.
+
+ b) Convey the object code in, or embodied in, a physical product
+ (including a physical distribution medium), accompanied by a
+ written offer, valid for at least three years and valid for as
+ long as you offer spare parts or customer support for that product
+ model, to give anyone who possesses the object code either (1) a
+ copy of the Corresponding Source for all the software in the
+ product that is covered by this License, on a durable physical
+ medium customarily used for software interchange, for a price no
+ more than your reasonable cost of physically performing this
+ conveying of source, or (2) access to copy the
+ Corresponding Source from a network server at no charge.
+
+ c) Convey individual copies of the object code with a copy of the
+ written offer to provide the Corresponding Source. This
+ alternative is allowed only occasionally and noncommercially, and
+ only if you received the object code with such an offer, in accord
+ with subsection 6b.
+
+ d) Convey the object code by offering access from a designated
+ place (gratis or for a charge), and offer equivalent access to the
+ Corresponding Source in the same way through the same place at no
+ further charge. You need not require recipients to copy the
+ Corresponding Source along with the object code. If the place to
+ copy the object code is a network server, the Corresponding Source
+ may be on a different server (operated by you or a third party)
+ that supports equivalent copying facilities, provided you maintain
+ clear directions next to the object code saying where to find the
+ Corresponding Source. Regardless of what server hosts the
+ Corresponding Source, you remain obligated to ensure that it is
+ available for as long as needed to satisfy these requirements.
+
+ e) Convey the object code using peer-to-peer transmission, provided
+ you inform other peers where the object code and Corresponding
+ Source of the work are being offered to the general public at no
+ charge under subsection 6d.
+
+ A separable portion of the object code, whose source code is excluded
+from the Corresponding Source as a System Library, need not be
+included in conveying the object code work.
+
+ A "User Product" is either (1) a "consumer product", which means any
+tangible personal property which is normally used for personal, family,
+or household purposes, or (2) anything designed or sold for incorporation
+into a dwelling. In determining whether a product is a consumer product,
+doubtful cases shall be resolved in favor of coverage. For a particular
+product received by a particular user, "normally used" refers to a
+typical or common use of that class of product, regardless of the status
+of the particular user or of the way in which the particular user
+actually uses, or expects or is expected to use, the product. A product
+is a consumer product regardless of whether the product has substantial
+commercial, industrial or non-consumer uses, unless such uses represent
+the only significant mode of use of the product.
+
+ "Installation Information" for a User Product means any methods,
+procedures, authorization keys, or other information required to install
+and execute modified versions of a covered work in that User Product from
+a modified version of its Corresponding Source. The information must
+suffice to ensure that the continued functioning of the modified object
+code is in no case prevented or interfered with solely because
+modification has been made.
+
+ If you convey an object code work under this section in, or with, or
+specifically for use in, a User Product, and the conveying occurs as
+part of a transaction in which the right of possession and use of the
+User Product is transferred to the recipient in perpetuity or for a
+fixed term (regardless of how the transaction is characterized), the
+Corresponding Source conveyed under this section must be accompanied
+by the Installation Information. But this requirement does not apply
+if neither you nor any third party retains the ability to install
+modified object code on the User Product (for example, the work has
+been installed in ROM).
+
+ The requirement to provide Installation Information does not include a
+requirement to continue to provide support service, warranty, or updates
+for a work that has been modified or installed by the recipient, or for
+the User Product in which it has been modified or installed. Access to a
+network may be denied when the modification itself materially and
+adversely affects the operation of the network or violates the rules and
+protocols for communication across the network.
+
+ Corresponding Source conveyed, and Installation Information provided,
+in accord with this section must be in a format that is publicly
+documented (and with an implementation available to the public in
+source code form), and must require no special password or key for
+unpacking, reading or copying.
+
+ 7. Additional Terms.
+
+ "Additional permissions" are terms that supplement the terms of this
+License by making exceptions from one or more of its conditions.
+Additional permissions that are applicable to the entire Program shall
+be treated as though they were included in this License, to the extent
+that they are valid under applicable law. If additional permissions
+apply only to part of the Program, that part may be used separately
+under those permissions, but the entire Program remains governed by
+this License without regard to the additional permissions.
+
+ When you convey a copy of a covered work, you may at your option
+remove any additional permissions from that copy, or from any part of
+it. (Additional permissions may be written to require their own
+removal in certain cases when you modify the work.) You may place
+additional permissions on material, added by you to a covered work,
+for which you have or can give appropriate copyright permission.
+
+ Notwithstanding any other provision of this License, for material you
+add to a covered work, you may (if authorized by the copyright holders of
+that material) supplement the terms of this License with terms:
+
+ a) Disclaiming warranty or limiting liability differently from the
+ terms of sections 15 and 16 of this License; or
+
+ b) Requiring preservation of specified reasonable legal notices or
+ author attributions in that material or in the Appropriate Legal
+ Notices displayed by works containing it; or
+
+ c) Prohibiting misrepresentation of the origin of that material, or
+ requiring that modified versions of such material be marked in
+ reasonable ways as different from the original version; or
+
+ d) Limiting the use for publicity purposes of names of licensors or
+ authors of the material; or
+
+ e) Declining to grant rights under trademark law for use of some
+ trade names, trademarks, or service marks; or
+
+ f) Requiring indemnification of licensors and authors of that
+ material by anyone who conveys the material (or modified versions of
+ it) with contractual assumptions of liability to the recipient, for
+ any liability that these contractual assumptions directly impose on
+ those licensors and authors.
+
+ All other non-permissive additional terms are considered "further
+restrictions" within the meaning of section 10. If the Program as you
+received it, or any part of it, contains a notice stating that it is
+governed by this License along with a term that is a further
+restriction, you may remove that term. If a license document contains
+a further restriction but permits relicensing or conveying under this
+License, you may add to a covered work material governed by the terms
+of that license document, provided that the further restriction does
+not survive such relicensing or conveying.
+
+ If you add terms to a covered work in accord with this section, you
+must place, in the relevant source files, a statement of the
+additional terms that apply to those files, or a notice indicating
+where to find the applicable terms.
+
+ Additional terms, permissive or non-permissive, may be stated in the
+form of a separately written license, or stated as exceptions;
+the above requirements apply either way.
+
+ 8. Termination.
+
+ You may not propagate or modify a covered work except as expressly
+provided under this License. Any attempt otherwise to propagate or
+modify it is void, and will automatically terminate your rights under
+this License (including any patent licenses granted under the third
+paragraph of section 11).
+
+ However, if you cease all violation of this License, then your
+license from a particular copyright holder is reinstated (a)
+provisionally, unless and until the copyright holder explicitly and
+finally terminates your license, and (b) permanently, if the copyright
+holder fails to notify you of the violation by some reasonable means
+prior to 60 days after the cessation.
+
+ Moreover, your license from a particular copyright holder is
+reinstated permanently if the copyright holder notifies you of the
+violation by some reasonable means, this is the first time you have
+received notice of violation of this License (for any work) from that
+copyright holder, and you cure the violation prior to 30 days after
+your receipt of the notice.
+
+ Termination of your rights under this section does not terminate the
+licenses of parties who have received copies or rights from you under
+this License. If your rights have been terminated and not permanently
+reinstated, you do not qualify to receive new licenses for the same
+material under section 10.
+
+ 9. Acceptance Not Required for Having Copies.
+
+ You are not required to accept this License in order to receive or
+run a copy of the Program. Ancillary propagation of a covered work
+occurring solely as a consequence of using peer-to-peer transmission
+to receive a copy likewise does not require acceptance. However,
+nothing other than this License grants you permission to propagate or
+modify any covered work. These actions infringe copyright if you do
+not accept this License. Therefore, by modifying or propagating a
+covered work, you indicate your acceptance of this License to do so.
+
+ 10. Automatic Licensing of Downstream Recipients.
+
+ Each time you convey a covered work, the recipient automatically
+receives a license from the original licensors, to run, modify and
+propagate that work, subject to this License. You are not responsible
+for enforcing compliance by third parties with this License.
+
+ An "entity transaction" is a transaction transferring control of an
+organization, or substantially all assets of one, or subdividing an
+organization, or merging organizations. If propagation of a covered
+work results from an entity transaction, each party to that
+transaction who receives a copy of the work also receives whatever
+licenses to the work the party's predecessor in interest had or could
+give under the previous paragraph, plus a right to possession of the
+Corresponding Source of the work from the predecessor in interest, if
+the predecessor has it or can get it with reasonable efforts.
+
+ You may not impose any further restrictions on the exercise of the
+rights granted or affirmed under this License. For example, you may
+not impose a license fee, royalty, or other charge for exercise of
+rights granted under this License, and you may not initiate litigation
+(including a cross-claim or counterclaim in a lawsuit) alleging that
+any patent claim is infringed by making, using, selling, offering for
+sale, or importing the Program or any portion of it.
+
+ 11. Patents.
+
+ A "contributor" is a copyright holder who authorizes use under this
+License of the Program or a work on which the Program is based. The
+work thus licensed is called the contributor's "contributor version".
+
+ A contributor's "essential patent claims" are all patent claims
+owned or controlled by the contributor, whether already acquired or
+hereafter acquired, that would be infringed by some manner, permitted
+by this License, of making, using, or selling its contributor version,
+but do not include claims that would be infringed only as a
+consequence of further modification of the contributor version. For
+purposes of this definition, "control" includes the right to grant
+patent sublicenses in a manner consistent with the requirements of
+this License.
+
+ Each contributor grants you a non-exclusive, worldwide, royalty-free
+patent license under the contributor's essential patent claims, to
+make, use, sell, offer for sale, import and otherwise run, modify and
+propagate the contents of its contributor version.
+
+ In the following three paragraphs, a "patent license" is any express
+agreement or commitment, however denominated, not to enforce a patent
+(such as an express permission to practice a patent or covenant not to
+sue for patent infringement). To "grant" such a patent license to a
+party means to make such an agreement or commitment not to enforce a
+patent against the party.
+
+ If you convey a covered work, knowingly relying on a patent license,
+and the Corresponding Source of the work is not available for anyone
+to copy, free of charge and under the terms of this License, through a
+publicly available network server or other readily accessible means,
+then you must either (1) cause the Corresponding Source to be so
+available, or (2) arrange to deprive yourself of the benefit of the
+patent license for this particular work, or (3) arrange, in a manner
+consistent with the requirements of this License, to extend the patent
+license to downstream recipients. "Knowingly relying" means you have
+actual knowledge that, but for the patent license, your conveying the
+covered work in a country, or your recipient's use of the covered work
+in a country, would infringe one or more identifiable patents in that
+country that you have reason to believe are valid.
+
+ If, pursuant to or in connection with a single transaction or
+arrangement, you convey, or propagate by procuring conveyance of, a
+covered work, and grant a patent license to some of the parties
+receiving the covered work authorizing them to use, propagate, modify
+or convey a specific copy of the covered work, then the patent license
+you grant is automatically extended to all recipients of the covered
+work and works based on it.
+
+ A patent license is "discriminatory" if it does not include within
+the scope of its coverage, prohibits the exercise of, or is
+conditioned on the non-exercise of one or more of the rights that are
+specifically granted under this License. You may not convey a covered
+work if you are a party to an arrangement with a third party that is
+in the business of distributing software, under which you make payment
+to the third party based on the extent of your activity of conveying
+the work, and under which the third party grants, to any of the
+parties who would receive the covered work from you, a discriminatory
+patent license (a) in connection with copies of the covered work
+conveyed by you (or copies made from those copies), or (b) primarily
+for and in connection with specific products or compilations that
+contain the covered work, unless you entered into that arrangement,
+or that patent license was granted, prior to 28 March 2007.
+
+ Nothing in this License shall be construed as excluding or limiting
+any implied license or other defenses to infringement that may
+otherwise be available to you under applicable patent law.
+
+ 12. No Surrender of Others' Freedom.
+
+ If conditions are imposed on you (whether by court order, agreement or
+otherwise) that contradict the conditions of this License, they do not
+excuse you from the conditions of this License. If you cannot convey a
+covered work so as to satisfy simultaneously your obligations under this
+License and any other pertinent obligations, then as a consequence you may
+not convey it at all. For example, if you agree to terms that obligate you
+to collect a royalty for further conveying from those to whom you convey
+the Program, the only way you could satisfy both those terms and this
+License would be to refrain entirely from conveying the Program.
+
+ 13. Use with the GNU Affero General Public License.
+
+ Notwithstanding any other provision of this License, you have
+permission to link or combine any covered work with a work licensed
+under version 3 of the GNU Affero General Public License into a single
+combined work, and to convey the resulting work. The terms of this
+License will continue to apply to the part which is the covered work,
+but the special requirements of the GNU Affero General Public License,
+section 13, concerning interaction through a network will apply to the
+combination as such.
+
+ 14. Revised Versions of this License.
+
+ The Free Software Foundation may publish revised and/or new versions of
+the GNU General Public License from time to time. Such new versions will
+be similar in spirit to the present version, but may differ in detail to
+address new problems or concerns.
+
+ Each version is given a distinguishing version number. If the
+Program specifies that a certain numbered version of the GNU General
+Public License "or any later version" applies to it, you have the
+option of following the terms and conditions either of that numbered
+version or of any later version published by the Free Software
+Foundation. If the Program does not specify a version number of the
+GNU General Public License, you may choose any version ever published
+by the Free Software Foundation.
+
+ If the Program specifies that a proxy can decide which future
+versions of the GNU General Public License can be used, that proxy's
+public statement of acceptance of a version permanently authorizes you
+to choose that version for the Program.
+
+ Later license versions may give you additional or different
+permissions. However, no additional obligations are imposed on any
+author or copyright holder as a result of your choosing to follow a
+later version.
+
+ 15. Disclaimer of Warranty.
+
+ THERE IS NO WARRANTY FOR THE PROGRAM, TO THE EXTENT PERMITTED BY
+APPLICABLE LAW. EXCEPT WHEN OTHERWISE STATED IN WRITING THE COPYRIGHT
+HOLDERS AND/OR OTHER PARTIES PROVIDE THE PROGRAM "AS IS" WITHOUT WARRANTY
+OF ANY KIND, EITHER EXPRESSED OR IMPLIED, INCLUDING, BUT NOT LIMITED TO,
+THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
+PURPOSE. THE ENTIRE RISK AS TO THE QUALITY AND PERFORMANCE OF THE PROGRAM
+IS WITH YOU. SHOULD THE PROGRAM PROVE DEFECTIVE, YOU ASSUME THE COST OF
+ALL NECESSARY SERVICING, REPAIR OR CORRECTION.
+
+ 16. Limitation of Liability.
+
+ IN NO EVENT UNLESS REQUIRED BY APPLICABLE LAW OR AGREED TO IN WRITING
+WILL ANY COPYRIGHT HOLDER, OR ANY OTHER PARTY WHO MODIFIES AND/OR CONVEYS
+THE PROGRAM AS PERMITTED ABOVE, BE LIABLE TO YOU FOR DAMAGES, INCLUDING ANY
+GENERAL, SPECIAL, INCIDENTAL OR CONSEQUENTIAL DAMAGES ARISING OUT OF THE
+USE OR INABILITY TO USE THE PROGRAM (INCLUDING BUT NOT LIMITED TO LOSS OF
+DATA OR DATA BEING RENDERED INACCURATE OR LOSSES SUSTAINED BY YOU OR THIRD
+PARTIES OR A FAILURE OF THE PROGRAM TO OPERATE WITH ANY OTHER PROGRAMS),
+EVEN IF SUCH HOLDER OR OTHER PARTY HAS BEEN ADVISED OF THE POSSIBILITY OF
+SUCH DAMAGES.
+
+ 17. Interpretation of Sections 15 and 16.
+
+ If the disclaimer of warranty and limitation of liability provided
+above cannot be given local legal effect according to their terms,
+reviewing courts shall apply local law that most closely approximates
+an absolute waiver of all civil liability in connection with the
+Program, unless a warranty or assumption of liability accompanies a
+copy of the Program in return for a fee.
+
+ END OF TERMS AND CONDITIONS
+
+ How to Apply These Terms to Your New Programs
+
+ If you develop a new program, and you want it to be of the greatest
+possible use to the public, the best way to achieve this is to make it
+free software which everyone can redistribute and change under these terms.
+
+ To do so, attach the following notices to the program. It is safest
+to attach them to the start of each source file to most effectively
+state the exclusion of warranty; and each file should have at least
+the "copyright" line and a pointer to where the full notice is found.
+
+
+ Copyright (C)
+
+ This program is free software: you can redistribute it and/or modify
+ it under the terms of the GNU General Public License as published by
+ the Free Software Foundation, either version 3 of the License, or
+ (at your option) any later version.
+
+ This program is distributed in the hope that it will be useful,
+ but WITHOUT ANY WARRANTY; without even the implied warranty of
+ MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. See the
+ GNU General Public License for more details.
+
+ You should have received a copy of the GNU General Public License
+ along with this program. If not, see .
+
+Also add information on how to contact you by electronic and paper mail.
+
+ If the program does terminal interaction, make it output a short
+notice like this when it starts in an interactive mode:
+
+ Copyright (C)
+ This program comes with ABSOLUTELY NO WARRANTY; for details type `show w'.
+ This is free software, and you are welcome to redistribute it
+ under certain conditions; type `show c' for details.
+
+The hypothetical commands `show w' and `show c' should show the appropriate
+parts of the General Public License. Of course, your program's commands
+might be different; for a GUI interface, you would use an "about box".
+
+ You should also get your employer (if you work as a programmer) or school,
+if any, to sign a "copyright disclaimer" for the program, if necessary.
+For more information on this, and how to apply and follow the GNU GPL, see
+.
+
+ The GNU General Public License does not permit incorporating your program
+into proprietary programs. If your program is a subroutine library, you
+may consider it more useful to permit linking proprietary applications with
+the library. If this is what you want to do, use the GNU Lesser General
+Public License instead of this License. But first, please read
+.
diff --git a/build.xml b/build.xml
new file mode 100755
index 0000000..85bf059
--- /dev/null
+++ b/build.xml
@@ -0,0 +1,45 @@
+
+
+ Plugin_Telemicroscopia: build file
+
+
+
+
+
+
+
+
+
+ Building the .jar file
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
+
diff --git a/lib/commons-codec-1.9.jar b/lib/commons-codec-1.9.jar
new file mode 100644
index 0000000..ef35f1c
Binary files /dev/null and b/lib/commons-codec-1.9.jar differ
diff --git a/lib/ij.jar b/lib/ij.jar
new file mode 100755
index 0000000..656b9e6
Binary files /dev/null and b/lib/ij.jar differ
diff --git a/lib/slf4j-api-1.7.5.jar b/lib/slf4j-api-1.7.5.jar
new file mode 100644
index 0000000..8766455
Binary files /dev/null and b/lib/slf4j-api-1.7.5.jar differ
diff --git a/src/ActivateCamera_.java b/src/ActivateCamera_.java
new file mode 100644
index 0000000..57f8b85
--- /dev/null
+++ b/src/ActivateCamera_.java
@@ -0,0 +1,68 @@
+import ij.Macro;
+import ij.plugin.PlugIn;
+
+import java.io.IOException;
+import java.net.BindException;
+
+import javax.swing.JOptionPane;
+
+import util.StatusIndicator;
+
+import communication.v4l.CamServer;
+
+/**
+ * This plugin runs when the activate/deactivate camera button is pushed.
+ *
+ * @author ehas
+ *
+ */
+public class ActivateCamera_ implements PlugIn {
+
+ public void run(String arg) {
+
+ // This variable is used to avoid the execution of several run()
+ // threads.
+ // This happens when the activate/deactivate camera button is pushed
+ // many times quickly.
+ CamServer.LockCamServerInit.lock();
+
+ // This variable is: true if the camera has been enabled, false if
+ // disabled
+ String state = Macro.getOptions().trim();
+
+ if (state.equals("true") && !CamServer.active) {
+
+ try {
+ CamServer.start();
+ } catch (IOException e) {
+ if(e instanceof java.net.BindException){
+ JOptionPane.showMessageDialog(null,
+ "No se ha podido inicializar el servidor de internet.\n" +
+ "Comprueba que el puerto " + CamServer.port + " está libre " +
+ "y que tienes los\npermisos necesarios para ocuparlo.",
+ "Fallo inicializando el servidor de internet",
+ JOptionPane.ERROR_MESSAGE);
+ } else {
+ JOptionPane.showMessageDialog(null,
+ "No se ha podido inicializar el servidor de internet",
+ "Fallo inicializando el servidor de internet",
+ JOptionPane.ERROR_MESSAGE);
+ }
+ if (CamServer.indicator != null) {
+ CamServer.indicator.setState(StatusIndicator.DOWN);
+ }
+ if (CamServer.cameraCheckBox != null){
+ CamServer.cameraCheckBox.setSelected(false);
+ }
+ }
+ }
+ // If camera has been disabled, the CamServer instance stops
+ else if (state.equals("false")) {
+ if (CamServer.active) {
+ CamServer.stop();
+ }
+ }
+ CamServer.LockCamServerInit.unlock();
+ }
+
+}
diff --git a/src/ActivateViewer_.java b/src/ActivateViewer_.java
new file mode 100644
index 0000000..ecb5a04
--- /dev/null
+++ b/src/ActivateViewer_.java
@@ -0,0 +1,32 @@
+import ij.ImagePlus;
+import ij.WindowManager;
+import ij.gui.ImageCanvas;
+import ij.plugin.PlugIn;
+
+import communication.v4l.CamServer;
+
+/**
+ * This plugin runs when the activate viewer button is pushed. If the CamServer
+ * has not been initialized, it does nothing.
+ *
+ * @author ehas
+ *
+ */
+public class ActivateViewer_ implements PlugIn {
+
+ @Override
+ public void run(String arg0) {
+
+ // If CamServer is active, it notifies that the button has been pushed
+ if (CamServer.active == true) {
+ try {
+ synchronized (CamServer.LockViewer) {
+ CamServer.LockViewer.notify();
+ }
+ } catch (Exception e) {
+ e.printStackTrace();
+ }
+ }
+
+ }
+}
diff --git a/src/Capture_.java b/src/Capture_.java
new file mode 100644
index 0000000..b02e52a
--- /dev/null
+++ b/src/Capture_.java
@@ -0,0 +1,22 @@
+import ij.plugin.PlugIn;
+
+import communication.v4l.CamServer;
+
+/**
+ * This plugin runs when the Capture button is pushed.
+ *
+ * @author ehas
+ *
+ */
+public class Capture_ implements PlugIn {
+ public void run(String arg) {
+
+ try {
+ synchronized (CamServer.LockLocal) {
+ CamServer.setLocalCapture(true);
+ }
+ } catch (Exception e) {
+ e.printStackTrace();
+ }
+ }
+}
diff --git a/src/Close_.java b/src/Close_.java
new file mode 100644
index 0000000..016df7e
--- /dev/null
+++ b/src/Close_.java
@@ -0,0 +1,46 @@
+import gestion.GestorSave;
+import ij.ImagePlus;
+import ij.WindowManager;
+import ij.macro.MacroRunner;
+import ij.plugin.PlugIn;
+
+import javax.swing.JOptionPane;
+
+import edition.ImageManager;
+import edition.RoiManager;
+
+/**
+ * This plugin runs when the close button is pushed. This is the right way to
+ * close the whole working area: Roi manager, Images manager and Displayer.
+ *
+ * @author ehas
+ *
+ */
+public class Close_ implements PlugIn {
+
+ @Override
+ public void run(String arg0) {
+ ImagePlus current = WindowManager.getCurrentImage();
+ if (current != null) {
+ // First ask for saving the current image
+ int result = JOptionPane.showConfirmDialog(null,
+ "¿Desea guardar el fichero actual?", "Guardar cambios",
+ JOptionPane.YES_NO_CANCEL_OPTION);
+ switch (result) {
+ case 0:
+ GestorSave saver = new GestorSave();
+ saver.saveAsTifInZip(current, false);
+ case 1:
+ new MacroRunner("run(\"ForceClose \")\n");
+ break;
+ default:
+ // Exit the dialog and do nothing
+ return;
+ }
+ } else {
+ JOptionPane.showMessageDialog(null, "No hay imágenes abiertas",
+ "Fallo cerrando ficheros", JOptionPane.ERROR_MESSAGE);
+ }
+ }
+
+}
diff --git a/src/ForceClose_.java b/src/ForceClose_.java
new file mode 100644
index 0000000..dab2fec
--- /dev/null
+++ b/src/ForceClose_.java
@@ -0,0 +1,30 @@
+import edition.ImageManager;
+import edition.RoiManager;
+import ij.ImagePlus;
+import ij.WindowManager;
+import ij.plugin.PlugIn;
+
+
+public class ForceClose_ implements PlugIn {
+
+ @Override
+ public void run(String arg0) {
+ ImagePlus current = WindowManager.getCurrentImage();
+ if (current != null) {
+ // Close everything related to the current session
+ if (RoiManager.getInstance() != null) {
+ RoiManager.getInstance().close();
+ RoiManager.setInstance(null);
+ }
+ if (ImageManager.getInstance() != null) {
+ ImageManager.getInstance().close();
+ }
+ while (WindowManager.getCurrentImage() != null) {
+ WindowManager.getCurrentImage().close();
+ WindowManager.setTempCurrentImage(null);
+ }
+ }
+
+ }
+
+}
diff --git a/src/Initialize_.java b/src/Initialize_.java
new file mode 100644
index 0000000..2d268d7
--- /dev/null
+++ b/src/Initialize_.java
@@ -0,0 +1,58 @@
+import ij.IJ;
+import ij.Prefs;
+import ij.plugin.PlugIn;
+
+import java.io.IOException;
+import java.util.Hashtable;
+
+import au.edu.jcu.v4l4j.exceptions.V4L4JException;
+
+import communication.v4l.CamServer;
+import communication.v4l.Settings;
+
+/**
+ * This plugin runs at the beginning of the telemicroscopy toolbar creation.
+ *
+ * @author ehas
+ *
+ */
+public class Initialize_ implements PlugIn {
+
+ public void run(String arg) {
+
+ // Set the useJFileChooser preference to false in order to avoid the
+ // change of Look&Feel when managing windows
+ Prefs.useJFileChooser = false;
+
+ // Hide the main IJ instance
+ IJ.getInstance().setVisible(false);
+
+ // Initialize the values with a device /dev/video0
+ String defaultDevice = Settings.getDefaultVideoDevice();
+ if (defaultDevice == null) {
+ // TODO print message
+ } else {
+ Hashtable defaultSettings = Settings
+ .getDefaultSettings(defaultDevice);
+ try {
+ String videoResolution = defaultSettings.get("videoResolution");
+ String captureResolution = defaultSettings
+ .get("captureResolution");
+ String interval = defaultSettings.get("interval");
+ CamServer.initialize(defaultDevice,
+ Integer.parseInt(videoResolution.split("x")[0]),
+ Integer.parseInt(videoResolution.split("x")[1]),
+ Integer.parseInt(captureResolution.split("x")[0]),
+ Integer.parseInt(captureResolution.split("x")[1]),
+ CamServer.port, Integer.parseInt(interval.split("/")[0]),
+ Integer.parseInt(interval.split("/")[1]));
+ } catch (NumberFormatException e) {
+ e.printStackTrace();
+ } catch (V4L4JException e) {
+ e.printStackTrace();
+ } catch (IOException e) {
+ e.printStackTrace();
+ }
+ }
+ }
+}
diff --git a/src/Menu_Customized.java b/src/Menu_Customized.java
new file mode 100644
index 0000000..d4129be
--- /dev/null
+++ b/src/Menu_Customized.java
@@ -0,0 +1,615 @@
+import gestion.GestorSave;
+import ij.IJ;
+import ij.ImagePlus;
+import ij.Macro;
+import ij.Prefs;
+import ij.WindowManager;
+import ij.gui.ImageWindow;
+import ij.gui.Toolbar;
+import ij.macro.MacroRunner;
+import ij.plugin.MacroInstaller;
+import ij.plugin.PlugIn;
+
+import java.awt.Dimension;
+import java.awt.Font;
+import java.awt.Frame;
+import java.awt.GridLayout;
+import java.awt.Image;
+import java.awt.Insets;
+import java.awt.MouseInfo;
+import java.awt.Toolkit;
+import java.awt.dnd.DropTarget;
+import java.awt.event.ActionEvent;
+import java.awt.event.ActionListener;
+import java.awt.event.KeyEvent;
+import java.awt.event.KeyListener;
+import java.awt.event.WindowAdapter;
+import java.awt.event.WindowEvent;
+import java.beans.PropertyChangeEvent;
+import java.beans.PropertyChangeListener;
+import java.io.BufferedReader;
+import java.io.File;
+import java.io.FileReader;
+import java.net.MalformedURLException;
+import java.net.URL;
+import java.util.ArrayList;
+import java.util.Enumeration;
+import java.util.HashMap;
+import java.util.List;
+import java.util.Map;
+
+import javax.swing.ImageIcon;
+import javax.swing.JButton;
+import javax.swing.JCheckBox;
+import javax.swing.JFrame;
+import javax.swing.JLabel;
+import javax.swing.JOptionPane;
+import javax.swing.JToolBar;
+import javax.swing.UIDefaults;
+import javax.swing.UIManager;
+
+import util.ConfigFile;
+import util.StatusIndicator;
+
+import communication.v4l.CamServer;
+import communication.v4l.SurveyForm;
+
+/**
+ * @author jerome.mutterer(at)ibmp.fr
+ *
+ */
+
+public class Menu_Customized implements PlugIn, ActionListener {
+
+ // private static final long serialVersionUID = 7436194992984622141L;
+ String macrodir = IJ.getDirectory("macros");
+ String name, title, path;
+ String startupAction = "";
+ String codeLibrary = "";
+ String separator = System.getProperty("file.separator");
+ JFrame frame = new JFrame();
+ Frame frontframe;
+ int xfw = 0;
+ int yfw = 0;
+ int wfw = 0;
+ int hfw = 0;
+ int preferredSize = 0;
+ JToolBar toolBar = null;
+ boolean tbOpenned = false;
+ boolean grid = true;
+ boolean visible = true;
+ boolean shouldExit = false;
+ boolean showSurveyForm = false;
+ JButton button = null;
+ JCheckBox checkBox = null;
+ private boolean isPopup = false;
+ private boolean isSticky = false;
+ int nButtons = 0;
+
+ public void run(String s) {
+ // s used if called from another plugin, or from an installed command.
+ // arg used when called from a run("command", arg) macro function
+ // if both are empty, we choose to run the assistant "createAB.txt"
+
+ String arg = Macro.getOptions();
+
+ if (arg == null && s.equals("")) {
+ try {
+ File macro = new File(Menu_Customized.class.getResource(
+ "createAB.txt").getFile());
+ new MacroRunner(macro);
+ return;
+ } catch (Exception e) {
+ IJ.error("createAB.txt file not found");
+ }
+
+ } else if (arg == null) { // call from an installed command
+ path = IJ.getDirectory("startup") + s;
+ try {
+ name = path.substring(path.lastIndexOf("/") + 1);
+ } catch (Exception e) {
+ }
+ } else { // called from a macro by run("Action Bar",arg)
+ path = IJ.getDirectory("startup") + arg;
+ try {
+ path = path.substring(0, path.indexOf(".txt") + 4);
+ name = path.substring(path.lastIndexOf("/") + 1);
+ } catch (Exception e) {
+ }
+ }
+
+ // title = name.substring(0, name.indexOf("."));
+ title = name.substring(0, name.indexOf(".")).replaceAll("_", " ")
+ .trim();
+ frame.setTitle(title);
+
+ if (WindowManager.getFrame(title) != null) {
+ WindowManager.getFrame(title).toFront();
+ return;
+ }
+
+ // Change the default font size
+ if (ConfigFile.configFile == null){
+ ConfigFile.setConfigFile(CamServer.configFile);
+ }
+ String sizeS = ConfigFile.getValue(ConfigFile.FONT_SIZE);
+ if (sizeS != null){
+ preferredSize = Integer.parseInt(sizeS);
+
+ UIDefaults defaults = UIManager.getDefaults();
+ List