README.md

mic-social-behavior-analysis

Summary

This repository includes code to:

Repository structure

Data folder structure and files

Install

1. Open the file install_environment.yml and substitute the path in the variable DATA_DIR to the path in your computer where the folder 2022_ANALYSIS_social is stored.

2. Install the conda environment, the trajectorytools package and the mic_analysis package:

    conda env create -f install_environment.yml
    pip install -e trajectorytools
    pip install -e pandas_split
    pip install -e .
   

3. Update path to DATA_DIR variable:

    conda env config vars set DATA_DIR="path/to/folder/20220314_Analysis_social"
   

4. Check that the environment variaboes is properly set:

    echo $DATA_DIR
   

Run

Visualize figures in the jupyter notebook

Change settings