.dockerignore

@@ -0,0 +1,54 @@
+*.egg-info
+*.egg
+*.eggs
+*.env
+*.sqlite
+*.pyc
+*~
+*.swp
+application.cfg
+site.cfg
+celerybeat.pid
+celerybeat-schedule
+env
+lib
+local
+include
+man
+pip-selfcheck.json
+log
+portal/test_uploads
+docker/portal.env
+docker/docker-compose.dev.*.yaml
+
+geckodriver.log
+coverage.xml
+
+.coverage
+.idea
+.project
+.pydevproject
+.pytest_cache
+.settings
+.tox
+
+# compiled (binary) translation files
+*.mo
+
+# generated CSS files
+portal/static/css/*.css
+
+# nodeJS virtual environment and files
+node_env/
+portal/node_modules/
+portal/package-lock.json
+
+# auto-generated JS eslint config when linting JS files (via command eslint) at development
+portal/static/js/.eslintrc.js
+portal/eproms/static/js/.eslintrc.js
+
+# auto-generated folders housing files from the frontend build, i.e. substudy tailored content
+portal/static/templates
+portal/static/bundle
+portal/eproms_substudy_tailored_content/node_modules
+portal/eproms_substudy_tailored_content/dist

.editorconfig

@@ -0,0 +1,11 @@
+# https://editorconfig.org/
+
+[*.py]
+# isort settings
+# https://github.com/timothycrosley/isort/wiki/isort-Settings
+line_length=100
+multi_line_output=3
+include_trailing_comma=True
+known_first_party=tests
+force_sort_within_sections=True
+combine_as_imports=True

.github/workflows/build-deliver.yaml

@@ -0,0 +1,35 @@
+# docker continuous delivery
+# deliver docker images to configured repo with tags to match branches and git tags
+---
+name: Build & Deliver
+on: [push]
+jobs:
+  build:
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout git commit
+        uses: actions/checkout@master
+        with:
+          fetch-depth: 0
+
+      - name: Set version environment variable
+        run: echo "PORTAL_VERSION="$(python setup.py --version)"" >> $GITHUB_ENV
+
+      - name: Publish to GitHub Container Registry
+        # TODO: pin to hash
+        uses: elgohr/Publish-Docker-Github-Action@main
+        with:
+          name: ${{ github.repository }}
+          registry: ghcr.io
+          dockerfile: docker/Dockerfile
+          context: ./
+
+          # configured at repo settings/secrets
+          # GitHub Username
+          username: ${{ secrets.DOCKER_USERNAME }}
+
+          # GitHub personal access token
+          password: ${{ secrets.DOCKER_PASSWORD }}
+
+          # push tags/release by their git name
+          tag_names: true

.gitignore

@@ -1,13 +1,14 @@
 *.egg-info
 *.egg
 *.eggs
+*.env
 *.sqlite
 *.pyc
 *~
 *.swp
-.coverage
 application.cfg
 site.cfg
+celerybeat.pid
 celerybeat-schedule
 env
 lib
@@ -18,9 +19,37 @@ pip-selfcheck.json
 log
 portal/test_uploads
 docker/portal.env
+docker/docker-compose.dev.*.yaml
+
+geckodriver.log
+coverage.xml
 
+.coverage
 .idea
-.tox/
-.settings/
-.pydevproject
 .project
+.pydevproject
+.pytest_cache
+.settings
+.tox
+
+# compiled (binary) translation files
+*.mo
+
+# generated CSS files
+portal/static/css/*.css
+
+# nodeJS virtual environment and files
+node_env/
+portal/node_modules/
+portal/static/js/dist/*.txt
+
+# auto-generated JS eslint config when linting JS files (via command eslint) at development
+portal/static/js/.eslintrc.js
+portal/eproms/static/js/.eslintrc.js
+
+# auto-generated folders housing files from the frontend build, i.e. substudy tailored content
+portal/static/templates
+portal/static/bundle
+portal/eproms_substudy_tailored_content/node_modules
+portal/eproms_substudy_tailored_content/dist
+portal/eproms_substudy_tailored_content/src/__tests__/__snapshots__

.gitlab-ci.yml

@@ -0,0 +1,90 @@
+# GitLab CI/CD Pipeline Configuration file
+# https://docs.gitlab.com/ee/ci/yaml/
+---
+# environment variables - also set in every service for a job
+# NB: setting PGHOST will cause the postgres service to fail
+variables:
+  SECRET_KEY: static secret key
+  SQLALCHEMY_DATABASE_TEST_URI: postgresql://postgres:${POSTGRES_PASSWORD}@postgres/${POSTGRES_DB}
+  REDIS_URL: redis://redis:6379/0
+  POSTGRES_DB: portaldb
+  POSTGRES_PASSWORD: wplatrop
+stages:
+  - test
+  - deploy
+
+before_script:
+  - pip install tox
+
+
+# test templates
+.test_template: &test_definition
+  # track debian stable version of python3
+  image: python:3.9
+  script: tox
+  stage: test
+
+.unit_test_template: &unit_test_definition
+  <<: *test_definition
+  services:
+    - postgres:13
+    - redis:latest
+
+
+# test jobs
+unit_tests:
+  variables:
+    TOXENV: py3
+  <<: *unit_test_definition
+
+unit_tests_celery_background:
+  variables:
+    TOXENV: celery_background
+  <<: *unit_test_definition
+
+docgen_test:
+  variables:
+    TOXENV: docs
+  <<: *test_definition
+
+i18n_test_eproms:
+  variables:
+    TOXENV: translations
+    PERSISTENCE_DIR: eproms
+  <<: *unit_test_definition
+
+i18n_test_tnusa:
+  variables:
+    TOXENV: translations
+    PERSISTENCE_DIR: gil
+  <<: *unit_test_definition
+
+
+# deploy templates
+.i18n_upload_template: &i18n_upload_definition
+  stage: deploy
+  # TODO re-enable/remove when future of Smartling integration more certain
+  # disable Smartling string uploads
+  when: manual
+  script:
+    - tox
+    # reuse tox virtual environment to also upload translations
+    - FLASK_APP=manage.py .tox/${TOXENV}/bin/python -m flask translation-upload
+  # only upload translations from develop branch
+  only:
+    refs: [develop]
+
+# deploy jobs
+i18n_upload_eproms:
+  <<: *unit_test_definition
+  <<: *i18n_upload_definition
+  variables:
+    TOXENV: translations
+    PERSISTENCE_DIR: eproms
+
+i18n_upload_tnusa:
+  <<: *unit_test_definition
+  <<: *i18n_upload_definition
+  variables:
+    TOXENV: translations
+    PERSISTENCE_DIR: gil

.pep8speaks.yml

@@ -2,7 +2,6 @@
 # https://pep8speaks.com/
 
 pycodestyle:
-  # Default is 79 in PEP8
   max-line-length: 100
 
 scanner: