From 19d1e424932a7e23d9af0979e199b08decaa57ae Mon Sep 17 00:00:00 2001 From: "UseGalaxy.EU Jenkins Bot" Date: Tue, 24 Oct 2023 17:23:25 +0200 Subject: [PATCH] Update site (4734) https://build.galaxyproject.eu/job/usegalaxy-eu/job/website/4734/ --- citations.html | 4 + events-ical.html | 42 +++ feed.xml | 353 +++++++++--------- freiburg/galaxy/gxnews.html | 132 +++++++ freiburg/galaxy/index.html | 38 +- freiburg/index.html | 36 +- freiburg/news.html | 132 +++++++ freiburg/people.html | 47 +++ freiburg/publications.html | 3 +- galaxy/index.html | 38 +- galaxy/news.html | 132 +++++++ index-materials.html | 1 + index-metabolomics.html | 36 +- index-proteomics.html | 36 +- index.html | 36 +- news.html | 132 +++++++ people.html | 47 +++ posts/2023/10/08/tool-update/index.html | 4 + posts/2023/10/08/tool-update/plain.html | 4 + posts/2023/10/15/tool-update/index.html | 457 ++++++++++++++++++++++++ posts/2023/10/15/tool-update/plain.html | 341 ++++++++++++++++++ posts/2023/10/22/tool-update/index.html | 323 +++++++++++++++++ posts/2023/10/22/tool-update/plain.html | 207 +++++++++++ widgets/news.html | 36 +- 24 files changed, 2315 insertions(+), 302 deletions(-) create mode 100644 posts/2023/10/15/tool-update/index.html create mode 100644 posts/2023/10/15/tool-update/plain.html create mode 100644 posts/2023/10/22/tool-update/index.html create mode 100644 posts/2023/10/22/tool-update/plain.html diff --git a/citations.html b/citations.html index f4474875a..038bd5972 100644 --- a/citations.html +++ b/citations.html @@ -137,6 +137,7 @@

Scientific

2023

  1. В,С.М. et al. (2023) ВЫЧИСЛИТЕЛЬНЫЙ АНАЛИЗ СТРУКТУРНОГО CОСТАВА ГЕНОМОВ КОРОНАВИРУСОВ. Доклады Белорусского государственного университета информатики и радиоэлектроники, 21, 104–113.
    2. +
  2. Agboli,E. et al. (2023) Interaction of Mesonivirus and Negevirus with arboviruses and the RNAi response in Culex tarsalis-derived cells. Parasites & Vectors, 16, 361.
  3. Ahmad,N. et al. (2023) Biosynthetic Potential of Hypogymnia Holobionts: Insights into Secondary Metabolite Pathways. Journal of Fungi, 9, 546.
  4. Multimodal epigenetic changes and altered NEUROD1 chromatin binding in the mouse hippocampus underlie FOXG1 syndrome (2023) Proceedings of the National Academy of Sciences, 120, e2122467120.
  5. Alvandi,H. et al. (2023) Pathovar-Specific PCR Method for Detection and Identification of Xanthomonas translucens pv. undulosa. Plant Disease.
    6. @@ -213,6 +214,7 @@

    2023

  6. Manna,P.T. et al. (2023) Endosomal vesicle fusion machinery is involved with the contractile vacuole in Dictyostelium discoideum. Journal of Cell Science, 136, jcs260477.
  7. Mathlouthi,N.E.H. et al. (2023) Colorectal Cancer Archaeome: A Metagenomic Exploration, Tunisia. Current Issues in Molecular Biology, 45, 7572–7581.
  8. Mathura,S.R. et al. (2023) Genome-wide Identification of the Auxin Transporter Gene Families in Sweet Potato (Ipomoea batatas) and their Expression During Tuberization. Tropical Plant Biology.
    9. +
  9. Mehta,S. et al. (2023) A Galaxy of informatics resources for MS-based proteomics. Expert Review of Proteomics, 0, 1–16.
  10. Métris,K.L. and Métris,J. (2023) Aircraft surveys for air eDNA: probing biodiversity in the sky. PeerJ, 11, e15171.
  11. Mohamed,N.A. et al. (2023) Candidate miRNAs from Oryza sativa for Silencing the Rice Tungro Viruses. Agriculture, 13, 651.
  12. Moris,V.C. et al. (2023) Intrasexual cuticular hydrocarbon dimorphism in a wasp sheds light on hydrocarbon biosynthesis genes in Hymenoptera. Communications Biology, 6, 1–15.
    13. @@ -273,6 +275,8 @@

    2023

  13. Wittke,S. et al. (2023) EODIE — Earth Observation Data Information Extractor. SoftwareX, 23, 101421.
  14. Wolf,J. et al. (2023) Transcriptional Profiling Identifies Prognostic Gene Signatures for Conjunctival Extranodal Marginal Zone Lymphoma. Biomolecules, 13, 115.
  15. Xu,F. et al. (2023) Reprogramming of the transcriptome after heat stress mediates heat hormesis in Caenorhabditis elegans. Nature Communications, 14, 1–16.
    16. +
  16. Yousif,M. et al. (2023) SARS-CoV-2 genomic surveillance in wastewater as a model for monitoring evolution of endemic viruses. Nature Communications, 14, 6325.
    17. +
  17. Zerouki,C. et al. (2023) Whole-genome sequence and mass spectrometry study of the snow blight fungus Phacidium infestans (Karsten) DSM 5139 growing at freezing temperatures. Molecular Genetics and Genomics.
  18. Zhang,Z. et al. (2023) NFATc1 Is a Central Mediator of EGFR-Induced ARID1A Chromatin Dissociation During Acinar Cell Reprogramming. Cellular and Molecular Gastroenterology and Hepatology.
  19. Zilbauer,M. et al. (2023) A Roadmap for the Human Gut Cell Atlas. Nature Reviews Gastroenterology & Hepatology, 1–18.
  20. Zinati,Z. and Nazari,L. (2023) Deciphering the molecular basis of abiotic stress response in cucumber (Cucumis sativus L.) using RNA-Seq meta-analysis, systems biology, and machine learning approaches. Scientific Reports, 13, 12942.
    21. diff --git a/events-ical.html b/events-ical.html index 88842d9c8..8200f46e8 100644 --- a/events-ical.html +++ b/events-ical.html @@ -4,6 +4,48 @@ BEGIN:VCALENDAR +PRODID:-//jekyll//NONSGML v1.0//EN +VERSION:2.0 +CALSCALE:GREGORIAN +METHOD:PUBLISH +X-WR-CALNAME:UseGalaxy.eu Tool Updates for 2023-10-22 +X-WR-TIMEZONE:Europe/Berlin +BEGIN:VEVENT +ORGANIZER;CN=:MAILTO:?subject=UseGalaxy.eu%20Tool%20Updates%20for%202023-10-22 +DTSTART;VALUE=DATE: +DTEND;VALUE=DATE: +DTSTAMP;VALUE=DATE:T000000Z +CREATED;VALUE=DATE:20231022T000000Z +UID:@usegalaxy.eu +DESCRIPTION: +LOCATION: +SEQUENCE:0 +STATUS:CONFIRMED +SUMMARY:UseGalaxy.eu Tool Updates for 2023-10-22 +TRANSP:OPAQUE +END:VEVENT + +PRODID:-//jekyll//NONSGML v1.0//EN +VERSION:2.0 +CALSCALE:GREGORIAN +METHOD:PUBLISH +X-WR-CALNAME:UseGalaxy.eu Tool Updates for 2023-10-15 +X-WR-TIMEZONE:Europe/Berlin +BEGIN:VEVENT +ORGANIZER;CN=:MAILTO:?subject=UseGalaxy.eu%20Tool%20Updates%20for%202023-10-15 +DTSTART;VALUE=DATE: +DTEND;VALUE=DATE: +DTSTAMP;VALUE=DATE:T000000Z +CREATED;VALUE=DATE:20231015T000000Z +UID:@usegalaxy.eu +DESCRIPTION: +LOCATION: +SEQUENCE:0 +STATUS:CONFIRMED +SUMMARY:UseGalaxy.eu Tool Updates for 2023-10-15 +TRANSP:OPAQUE +END:VEVENT + PRODID:-//jekyll//NONSGML v1.0//EN VERSION:2.0 CALSCALE:GREGORIAN diff --git a/feed.xml b/feed.xml index 08d342f44..5f620a6a5 100644 --- a/feed.xml +++ b/feed.xml @@ -1,4 +1,182 @@ -Jekyll2023-10-12T02:48:49+02:00https://galaxyproject.eu/feed.xmlGalaxy EuropeThe European Galaxy InstanceUseGalaxy.eu Tool Updates for 2023-10-082023-10-08T00:00:00+02:002023-10-08T00:00:00+02:00https://galaxyproject.eu/posts/2023/10/08/tool-update<p>On 2023-10-08, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in <a href="https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#410/">Jenkins Build #410</a></p> +Jekyll2023-10-24T17:14:46+02:00https://galaxyproject.eu/feed.xmlGalaxy EuropeThe European Galaxy InstanceUseGalaxy.eu Tool Updates for 2023-10-222023-10-22T00:00:00+02:002023-10-22T00:00:00+02:00https://galaxyproject.eu/posts/2023/10/22/tool-update<p>On 2023-10-22, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in <a href="https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#412/">Jenkins Build #412</a></p> + +<h2 id="qiime-2">QIIME 2</h2> + +<ul> + <li>qiime2__deblur__denoise_16S was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2">2572fc0f88f2</a></li> +</ul> + +<h2 id="proteomics">Proteomics</h2> + +<ul> + <li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/40cc19c0dbd6">40cc19c0dbd6</a></li> + <li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c">a2a842b00f9c</a></li> + <li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/fc36cfd19834">fc36cfd19834</a></li> + <li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc">0fc9ae55bcfc</a></li> + <li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d">e7881a82b56d</a></li> + <li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173">81402a5e4173</a></li> + <li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358">9a6e3bb0f358</a></li> +</ul> + +<h2 id="none">None</h2> + +<ul> + <li>data_manager_diamond_database_builder was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78">4a08b7b76b78</a></li> +</ul>On 2023-10-22, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #412UseGalaxy.eu Tool Updates for 2023-10-152023-10-15T00:00:00+02:002023-10-15T00:00:00+02:00https://galaxyproject.eu/posts/2023/10/15/tool-update<p>On 2023-10-15, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in <a href="https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#411/">Jenkins Build #411</a></p> + +<h2 id="metabolomics">Metabolomics</h2> + +<ul> + <li>dimet_abundance_plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_abundance_plot/c9040bdb918c">c9040bdb918c</a></li> + <li>dimet_differential_analysis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_differential_analysis/c46d33411495">c46d33411495</a></li> + <li>dimet_differential_multigroup_analysis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_differential_multigroup_analysis/e88cf5618b40">e88cf5618b40</a></li> + <li>dimet_enrichment_plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_enrichment_plot/254408bfc5c0">254408bfc5c0</a></li> + <li>dimet_isotopologues_plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_isotopologues_plot/a3349c105bd0">a3349c105bd0</a></li> + <li>dimet_metabologram was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_metabologram/a7d3e880e74c">a7d3e880e74c</a></li> + <li>dimet_pca_analysis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_pca_analysis/04d213632103">04d213632103</a></li> + <li>dimet_pca_plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_pca_plot/952808ffa842">952808ffa842</a></li> + <li>dimet_timecourse_analysis was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/dimet_timecourse_analysis/cb8c4ae59da9">cb8c4ae59da9</a></li> + <li>biotransformer was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/biotransformer/e5fcba090b10">e5fcba090b10</a></li> + <li>matchms_convert was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_convert/d4609fbf8ca3">d4609fbf8ca3</a></li> + <li>matchms_filtering was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_filtering/13de8005adba">13de8005adba</a></li> + <li>matchms_fingerprint_similarity was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_fingerprint_similarity/df85b26201d1">df85b26201d1</a></li> + <li>matchms_formatter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_formatter/ae45992f969e">ae45992f969e</a></li> + <li>matchms_metadata_export was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_export/7504a8f93699">7504a8f93699</a></li> + <li>matchms_metadata_match was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_metadata_match/b5b360897004">b5b360897004</a></li> + <li>matchms_networking was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_networking/9982b85ff4e7">9982b85ff4e7</a></li> + <li>matchms_similarity was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_similarity/872d8040f713">872d8040f713</a></li> + <li>matchms_spectral_similarity was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_spectral_similarity/3f96c93f8566">3f96c93f8566</a></li> + <li>matchms_split was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/matchms_split/97be845e45c2">97be845e45c2</a></li> + <li>msmetaenhancer was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/msmetaenhancer/3e2cb0bc6959">3e2cb0bc6959</a></li> + <li>ramclustr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/ramclustr/09cabbc3d12d">09cabbc3d12d</a></li> + <li>ramclustr_define_experiment was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/ramclustr_define_experiment/7bbdcce50541">7bbdcce50541</a></li> + <li>recetox_aplcms_align_features was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_align_features/2b6bfa234d8b">2b6bfa234d8b</a></li> + <li>recetox_aplcms_compute_clusters was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_compute_clusters/550667ce03f1">550667ce03f1</a></li> + <li>recetox_aplcms_compute_template was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_compute_template/e2dc815e1b2c">e2dc815e1b2c</a></li> + <li>recetox_aplcms_correct_time was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_correct_time/d69ec1171d71">d69ec1171d71</a></li> + <li>recetox_aplcms_generate_feature_table was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_generate_feature_table/32b66fb6a6a0">32b66fb6a6a0</a></li> + <li>recetox_aplcms_merge_known_table was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_merge_known_table/8ecb609cc265">8ecb609cc265</a></li> + <li>recetox_aplcms_recover_weaker_signals was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_recover_weaker_signals/a9bb2ccc53de">a9bb2ccc53de</a></li> + <li>recetox_aplcms_remove_noise was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/recetox_aplcms_remove_noise/12bf74dd09f1">12bf74dd09f1</a></li> + <li>recetox_xmsannotator_advanced was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/recetox_xmsannotator_advanced/50ac7359ffe7">50ac7359ffe7</a></li> + <li>riassigner was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/riassigner/8c5e65adf694">8c5e65adf694</a></li> + <li>rmassbank was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/rmassbank/c1a9c990d4b0">c1a9c990d4b0</a></li> + <li>waveica was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/waveica/dbbedb14b44c">dbbedb14b44c</a></li> +</ul> + +<h2 id="qiime-2">QIIME 2</h2> + +<ul> + <li>qiime2__deblur__denoise_16S was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2">2572fc0f88f2</a></li> +</ul> + +<h2 id="proteomics">Proteomics</h2> + +<ul> + <li>msstatstmt was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/msstatstmt/fd3dc69b78ff">fd3dc69b78ff</a></li> + <li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c">a2a842b00f9c</a></li> + <li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc">0fc9ae55bcfc</a></li> + <li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d">e7881a82b56d</a></li> + <li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173">81402a5e4173</a></li> + <li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358">9a6e3bb0f358</a></li> +</ul> + +<h2 id="annotation">Annotation</h2> + +<ul> + <li>cpt_annotation_table was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_annotation_table/6998c2570145">6998c2570145</a></li> + <li>cpt_gbk_renumber was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_gbk_renumber/8cac332dbc77">8cac332dbc77</a></li> + <li>cpt_genome_editor was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_genome_editor/78ce8a1a8fd1">78ce8a1a8fd1</a></li> + <li>cpt_gff_extract_seq was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_gff_extract_seq/ab40380424c9">ab40380424c9</a></li> + <li>cpt_gff_rebase was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_gff_rebase/4f4b413056f6">4f4b413056f6</a></li> + <li>cpt_intersect_adjacent was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_intersect_adjacent/7e393668b4b9">7e393668b4b9</a></li> + <li>cpt_intron_detection was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_intron_detection/0a98d5259ef0">0a98d5259ef0</a></li> + <li>cpt_lipory was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_lipory/b79df4966ebb">b79df4966ebb</a></li> + <li>cpt_phageqc_annotations was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_phageqc_annotations/c3140b08d703">c3140b08d703</a></li> + <li>cpt_require_shine was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_require_shine/a6dc48930318">a6dc48930318</a></li> + <li>braker3 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/genouest/braker3/bd103884a09c">bd103884a09c</a></li> +</ul> + +<h2 id="phylogenetics">Phylogenetics</h2> + +<ul> + <li>cpt_related_genomes_nuc was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_related_genomes_nuc/5a5fe0a6f78d">5a5fe0a6f78d</a></li> + <li>cpt_related_genomes_prot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_related_genomes_prot/ebcc87a27f9c">ebcc87a27f9c</a></li> + <li>cpt_xmfa_to_table was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_xmfa_to_table/06d8e28d0bd7">06d8e28d0bd7</a></li> +</ul> + +<h2 id="convert-formats">Convert Formats</h2> + +<ul> + <li>cpt_gbk_to_5col was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_gbk_to_5col/1bdd481d5c25">1bdd481d5c25</a></li> + <li>cpt_gbk_to_gff was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_gbk_to_gff/bb6332a85aa6">bb6332a85aa6</a></li> + <li>cpt_gff_split was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_gff_split/8bd03ba8510a">8bd03ba8510a</a></li> + <li>cpt_gff_to_gbk was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_gff_to_gbk/35a6c466e270">35a6c466e270</a></li> +</ul> + +<h2 id="graphdisplay-data">Graph/Display Data</h2> + +<ul> + <li>cpt_linear_genome_plot was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_linear_genome_plot/e923c686ead9">e923c686ead9</a></li> +</ul> + +<h2 id="assembly">Assembly</h2> + +<ul> + <li>hifiasm was updated to <a href="https://toolshed.g2.bx.psu.edu/view/bgruening/hifiasm/60024a528cbd">60024a528cbd</a></li> + <li>hapog was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/hapog/7d56a813fd24">7d56a813fd24</a></li> + <li>shovill was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/shovill/ee17a294d3a3">ee17a294d3a3</a></li> +</ul> + +<h2 id="mothur">Mothur</h2> + +<ul> + <li>mothur_unifrac_unweighted was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/mothur_unifrac_unweighted/6a622b34394a">6a622b34394a</a></li> +</ul> + +<h2 id="rna-analysis">RNA Analysis</h2> + +<ul> + <li>edger was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/edger/070900306913">070900306913</a></li> +</ul> + +<h2 id="none">None</h2> + +<ul> + <li>data_manager_diamond_database_builder was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78">4a08b7b76b78</a></li> +</ul> + +<h2 id="hca_sc_scanpy_tools">hca_sc_scanpy_tools</h2> + +<ul> + <li>anndata_ops was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/anndata_ops/2e8022f1923c">2e8022f1923c</a></li> + <li>scanpy_compute_graph was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_compute_graph/f776e3ed3c03">f776e3ed3c03</a></li> + <li>scanpy_filter_cells was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_filter_cells/356fa6c27341">356fa6c27341</a></li> + <li>scanpy_filter_genes was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_filter_genes/9a36525a8425">9a36525a8425</a></li> + <li>scanpy_find_cluster was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_find_cluster/d19920419c78">d19920419c78</a></li> + <li>scanpy_find_markers was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_find_markers/f0f78d29130f">f0f78d29130f</a></li> + <li>scanpy_find_variable_genes was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_find_variable_genes/273faaa2bd69">273faaa2bd69</a></li> + <li>scanpy_integrate_bbknn was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_integrate_bbknn/12fc7e093094">12fc7e093094</a></li> + <li>scanpy_integrate_combat was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_integrate_combat/c6611adc8f4a">c6611adc8f4a</a></li> + <li>scanpy_integrate_harmony was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_integrate_harmony/18e01a7c55c6">18e01a7c55c6</a></li> + <li>scanpy_integrate_mnn was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_integrate_mnn/e9788746e0f6">e9788746e0f6</a></li> + <li>scanpy_multiplet_scrublet was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_multiplet_scrublet/fadc4fbf8025">fadc4fbf8025</a></li> + <li>scanpy_normalise_data was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_normalise_data/4bbb2179521c">4bbb2179521c</a></li> + <li>scanpy_parameter_iterator was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_parameter_iterator/99301e5feddc">99301e5feddc</a></li> + <li>scanpy_plot_embed was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_plot_embed/bfb4d298d75f">bfb4d298d75f</a></li> + <li>scanpy_plot_scrublet was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_plot_scrublet/4276a6dea8d1">4276a6dea8d1</a></li> + <li>scanpy_plot_trajectory was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_plot_trajectory/9d746af31fe8">9d746af31fe8</a></li> + <li>scanpy_read_10x was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_read_10x/af6ecb5adcc1">af6ecb5adcc1</a></li> + <li>scanpy_regress_variable was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_regress_variable/bd65279c7ddc">bd65279c7ddc</a></li> + <li>scanpy_run_diffmap was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_run_diffmap/afec1d52b87d">afec1d52b87d</a></li> + <li>scanpy_run_dpt was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_run_dpt/2f569aa8c920">2f569aa8c920</a></li> + <li>scanpy_run_fdg was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_run_fdg/cef0ddd01875">cef0ddd01875</a></li> + <li>scanpy_run_paga was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_run_paga/6b7a5d15a89b">6b7a5d15a89b</a></li> + <li>scanpy_run_pca was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_run_pca/f0eecf608220">f0eecf608220</a></li> + <li>scanpy_run_tsne was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_run_tsne/64cd33540fee">64cd33540fee</a></li> + <li>scanpy_run_umap was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_run_umap/9984f48961d0">9984f48961d0</a></li> + <li>scanpy_scale_data was updated to <a href="https://toolshed.g2.bx.psu.edu/view/ebi-gxa/scanpy_scale_data/bf30bd6355da">bf30bd6355da</a></li> +</ul>On 2023-10-15, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #411UseGalaxy.eu Tool Updates for 2023-10-082023-10-08T00:00:00+02:002023-10-08T00:00:00+02:00https://galaxyproject.eu/posts/2023/10/08/tool-update<p>On 2023-10-08, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in <a href="https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#410/">Jenkins Build #410</a></p> <h2 id="metabolomics">Metabolomics</h2> @@ -785,175 +963,4 @@ <ul> <li>data_manager_diamond_database_builder was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78">4a08b7b76b78</a></li> -</ul>On 2023-09-10, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #403UseGalaxy.eu Tool Updates for 2023-09-032023-09-03T00:00:00+02:002023-09-03T00:00:00+02:00https://galaxyproject.eu/posts/2023/09/03/tool-update<p>On 2023-09-03, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in <a href="https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#402/">Jenkins Build #402</a></p> - -<h2 id="qiime-2">QIIME 2</h2> - -<ul> - <li>qiime2__deblur__denoise_16S was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2">2572fc0f88f2</a></li> -</ul> - -<h2 id="mapping">Mapping</h2> - -<ul> - <li>rgrnastar was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/rgrnastar/79de45b5069b">79de45b5069b</a></li> - <li>rna_starsolo was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/rna_starsolo/5ef7ec16b04f">5ef7ec16b04f</a></li> -</ul> - -<h2 id="proteomics">Proteomics</h2> - -<ul> - <li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c">a2a842b00f9c</a></li> - <li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc">0fc9ae55bcfc</a></li> - <li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d">e7881a82b56d</a></li> - <li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173">81402a5e4173</a></li> - <li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358">9a6e3bb0f358</a></li> -</ul> - -<h2 id="chemicaltoolbox">ChemicalToolBox</h2> - -<ul> - <li>alphafold2 was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxy-australia/alphafold2/e4a053d67e24">e4a053d67e24</a></li> -</ul> - -<h2 id="assembly">Assembly</h2> - -<ul> - <li>instagraal was updated to <a href="https://toolshed.g2.bx.psu.edu/view/bgruening/instagraal/d1be552c6034">d1be552c6034</a></li> - <li>racon was updated to <a href="https://toolshed.g2.bx.psu.edu/view/bgruening/racon/936f0b5e7fcc">936f0b5e7fcc</a></li> - <li>cactus_cactus was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxy-australia/cactus_cactus/94b8c6013083">94b8c6013083</a></li> - <li>cactus_export was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxy-australia/cactus_export/3ff17bad4006">3ff17bad4006</a></li> -</ul> - -<h2 id="annotation">Annotation</h2> - -<ul> - <li>cpt_convert_glimmer was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_convert_glimmer/faff58a642fb">faff58a642fb</a></li> - <li>annotatemyids was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/annotatemyids/cd2480f35935">cd2480f35935</a></li> -</ul> - -<h2 id="imaging">Imaging</h2> - -<ul> - <li>bfconvert was updated to <a href="https://toolshed.g2.bx.psu.edu/view/imgteam/bfconvert/10eed33aa9b2">10eed33aa9b2</a></li> -</ul> - -<h2 id="metagenomic-analysis">Metagenomic Analysis</h2> - -<ul> - <li>recentrifuge was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/recentrifuge/b5407cc2bf51">b5407cc2bf51</a></li> - <li>staramr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/nml/staramr/141afacabcfa">141afacabcfa</a></li> -</ul> - -<h2 id="mothur">Mothur</h2> - -<ul> - <li>mothur_align_check was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/mothur_align_check/e24361e6dd15">e24361e6dd15</a></li> -</ul> - -<h2 id="none">None</h2> - -<ul> - <li>data_manager_diamond_database_builder was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78">4a08b7b76b78</a></li> -</ul> - -<h2 id="apollo">Apollo</h2> - -<ul> - <li>apollo_delete_features was updated to <a href="https://toolshed.g2.bx.psu.edu/view/gga/apollo_delete_features/5b371b11b1f5">5b371b11b1f5</a></li> -</ul>On 2023-09-03, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #402UseGalaxy.eu Tool Updates for 2023-08-272023-08-27T00:00:00+02:002023-08-27T00:00:00+02:00https://galaxyproject.eu/posts/2023/08/27/tool-update<p>On 2023-08-27, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in <a href="https://build.galaxyproject.eu/job/usegalaxy-eu/job/install-tools/#401/">Jenkins Build #401</a></p> - -<h2 id="metabolomics">Metabolomics</h2> - -<ul> - <li>msnbase_readmsdata was updated to <a href="https://toolshed.g2.bx.psu.edu/view/lecorguille/msnbase_readmsdata/11ab2081bd4a">11ab2081bd4a</a></li> - <li>xcms_fillpeaks was updated to <a href="https://toolshed.g2.bx.psu.edu/view/lecorguille/xcms_fillpeaks/26d77e9ceb49">26d77e9ceb49</a></li> - <li>xcms_group was updated to <a href="https://toolshed.g2.bx.psu.edu/view/lecorguille/xcms_group/d45a786cbc40">d45a786cbc40</a></li> - <li>xcms_merge was updated to <a href="https://toolshed.g2.bx.psu.edu/view/lecorguille/xcms_merge/5bd125a3f3b0">5bd125a3f3b0</a></li> - <li>xcms_plot_chromatogram was updated to <a href="https://toolshed.g2.bx.psu.edu/view/lecorguille/xcms_plot_chromatogram/024974037c4e">024974037c4e</a></li> - <li>xcms_retcor was updated to <a href="https://toolshed.g2.bx.psu.edu/view/lecorguille/xcms_retcor/aa252eec9229">aa252eec9229</a></li> - <li>xcms_summary was updated to <a href="https://toolshed.g2.bx.psu.edu/view/lecorguille/xcms_summary/018a9771de28">018a9771de28</a></li> - <li>xcms_xcmsset was updated to <a href="https://toolshed.g2.bx.psu.edu/view/lecorguille/xcms_xcmsset/b02d1992a43a">b02d1992a43a</a></li> - <li>ramclustr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/recetox/ramclustr/050cfef6ba65">050cfef6ba65</a></li> -</ul> - -<h2 id="qiime-2">QIIME 2</h2> - -<ul> - <li>qiime2__deblur__denoise_16S was updated to <a href="https://toolshed.g2.bx.psu.edu/view/q2d2/qiime2__deblur__denoise_16S/2572fc0f88f2">2572fc0f88f2</a></li> -</ul> - -<h2 id="chemicaltoolbox">ChemicalToolBox</h2> - -<ul> - <li>enumerate_charges was updated to <a href="https://toolshed.g2.bx.psu.edu/view/bgruening/enumerate_charges/0f3e5c69251e">0f3e5c69251e</a></li> -</ul> - -<h2 id="proteomics">Proteomics</h2> - -<ul> - <li>openms_fidoadapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_fidoadapter/b552ec8456e7">b552ec8456e7</a></li> - <li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/40cc19c0dbd6">40cc19c0dbd6</a></li> - <li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/a2a842b00f9c">a2a842b00f9c</a></li> - <li>openms_openpepxl was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_openpepxl/fc36cfd19834">fc36cfd19834</a></li> - <li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/0fc9ae55bcfc">0fc9ae55bcfc</a></li> - <li>openms_percolatoradapter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_percolatoradapter/e7881a82b56d">e7881a82b56d</a></li> - <li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/81402a5e4173">81402a5e4173</a></li> - <li>openms_xfdr was updated to <a href="https://toolshed.g2.bx.psu.edu/view/galaxyp/openms_xfdr/9a6e3bb0f358">9a6e3bb0f358</a></li> -</ul> - -<h2 id="fastafastq">FASTA/FASTQ</h2> - -<ul> - <li>cpt_fasta_remove_id was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_fasta_remove_id/78222649a59a">78222649a59a</a></li> -</ul> - -<h2 id="annotation">Annotation</h2> - -<ul> - <li>cpt_fix_sixpack was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_fix_sixpack/efa4dfc23549">efa4dfc23549</a></li> - <li>cpt_get_orfs was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_get_orfs/f97bc7f587a1">f97bc7f587a1</a></li> - <li>cpt_gff_add_parents was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_gff_add_parents/d839cfd1c3a6">d839cfd1c3a6</a></li> - <li>cpt_prep_for_apollo was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_prep_for_apollo/6901154b1003">6901154b1003</a></li> - <li>cpt_remove_annotations was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_remove_annotations/49f50c55a9f8">49f50c55a9f8</a></li> - <li>cpt_req_phage_start was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_req_phage_start/cc3b78f2b4b2">cc3b78f2b4b2</a></li> - <li>cpt_shinefind was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_shinefind/6a5aac2a4c89">6a5aac2a4c89</a></li> - <li>cpt_type_filter was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_type_filter/3df8d991938a">3df8d991938a</a></li> -</ul> - -<h2 id="convert-formats">Convert Formats</h2> - -<ul> - <li>cpt_convert_mga was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_convert_mga/1bf722ba06e3">1bf722ba06e3</a></li> - <li>cpt_fix_aragorn was updated to <a href="https://toolshed.g2.bx.psu.edu/view/cpt/cpt_fix_aragorn/f0f0ab9db43f">f0f0ab9db43f</a></li> -</ul> - -<h2 id="metagenomic-analysis">Metagenomic Analysis</h2> - -<ul> - <li>concoct was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/concoct/16672a3c9b65">16672a3c9b65</a></li> - <li>concoct_coverage_table was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/concoct_coverage_table/0442e7102125">0442e7102125</a></li> - <li>concoct_cut_up_fasta was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/concoct_cut_up_fasta/f80e693468d8">f80e693468d8</a></li> - <li>concoct_extract_fasta_bins was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/concoct_extract_fasta_bins/c821c34ab9d9">c821c34ab9d9</a></li> - <li>concoct_merge_cut_up_clustering was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/concoct_merge_cut_up_clustering/713189575b8b">713189575b8b</a></li> -</ul> - -<h2 id="none">None</h2> - -<ul> - <li>data_manager_bakta was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_bakta/d74850cf4e42">d74850cf4e42</a></li> - <li>data_manager_diamond_database_builder was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/data_manager_diamond_database_builder/4a08b7b76b78">4a08b7b76b78</a></li> -</ul> - -<h2 id="variant-calling">Variant Calling</h2> - -<ul> - <li>ensembl_vep was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/ensembl_vep/fdbd97ff825e">fdbd97ff825e</a></li> -</ul> - -<h2 id="virology">Virology</h2> - -<ul> - <li>cooc_mutbamscan was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/cooc_mutbamscan/d58a57db7a96">d58a57db7a96</a></li> - <li>cooc_tabmut was updated to <a href="https://toolshed.g2.bx.psu.edu/view/iuc/cooc_tabmut/eeb5c054ecf8">eeb5c054ecf8</a></li> -</ul>On 2023-08-27, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #401 \ No newline at end of file +</ul>On 2023-09-10, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #403 \ No newline at end of file diff --git a/freiburg/galaxy/gxnews.html b/freiburg/galaxy/gxnews.html index 4f6b11f0e..1220b8cec 100644 --- a/freiburg/galaxy/gxnews.html +++ b/freiburg/galaxy/gxnews.html @@ -48,6 +48,138 @@ + tags.push(`tools`) + + tags.push(`Freiburg`) + + if (!userTag ? true : tags.includes(userTag)) { + counter++ + + div = ` + ${counter === 3 ? 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    +
    +

    On 2023-10-22, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #412

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    +
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    UseGalaxy.eu Tool Updates for 2023-10-15

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    +
    +

    On 2023-10-15, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #411

    +
    +
    +
    +
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    Oct 22, 2023

    @@ -93,15 +93,15 @@

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    @@ -165,15 +165,15 @@

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    @@ -189,15 +189,15 @@

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    @@ -213,7 +213,7 @@

    - UseGalaxy.eu Tool Updates for 2023-09-25 + UseGalaxy.eu Tool Updates for 2023-10-01

    @@ -1221,7 +1221,7 @@

    Training

    We regularly provide workshops

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    @@ -311,15 +311,15 @@

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    @@ -335,15 +335,15 @@

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    @@ -383,15 +383,15 @@

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    @@ -407,15 +407,15 @@

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    @@ -431,7 +431,7 @@

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    + + + +

    UseGalaxy.eu Tool Updates for 2023-10-22

    +     + + + + + + + + + + + + + + + + + + October 22, 2023 + + + Freiburg + + + + tools + + + +
    +
    +

    On 2023-10-22, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #412

    +
    +
    +
    +
    + ${counter === 3 ? '
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    +
    + + + +

    UseGalaxy.eu Tool Updates for 2023-10-15

    +     + + + + + + + + + + + + + + + + + + October 15, 2023 + + + Freiburg + + + + tools + + + +
    +
    +

    On 2023-10-15, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #411

    +
    +
    +
    +
    + ${counter === 3 ? '
    ' : ''} + ` + if (counter === 3) { + counter = 0 + } + + news.append(div); + } + tags = [] + + + tags.push(`tools`) tags.push(`Freiburg`) diff --git a/freiburg/people.html b/freiburg/people.html index 28fc1bba4..dd75bda40 100644 --- a/freiburg/people.html +++ b/freiburg/people.html @@ -1097,6 +1097,53 @@
    Laila Los
    + + + + + + + + +
    +
    +
    + Polina Polunina's Picture +
    Polina Polunina
    +

    M.Sc. Inf., Researcher

    + +
    diff --git a/freiburg/publications.html b/freiburg/publications.html index cc226b161..5d61b5ae2 100644 --- a/freiburg/publications.html +++ b/freiburg/publications.html @@ -142,7 +142,8 @@

    Our publications

    2023

    -
    1. Mehta,S. et al. (2023) A Galaxy of informatics resources for MS-based proteomics. Expert Review of Proteomics, 1–16.
      2. +
      1. Weil,H.L. et al. (2023) \lessscp\greaterPLANTdataHUB\less/scp\greater: a collaborative platform for continuous \lessscp\greaterFAIR\less/scp\greater data sharing in plant research. The Plant Journal.
        2. +
      2. Mehta,S. et al. (2023) A Galaxy of informatics resources for MS-based proteomics. Expert Review of Proteomics, 1–16.
      3. The European Reference Genome Atlas: piloting a decentralised approach to equitable biodiversity genomics (2023) bioRxiv.
      4. Härdtner,C. et al. (2023) A comparative gene expression matrix in Apoe-deficient mice identifies unique and atherosclerotic disease stage-specific gene regulation patterns in monocytes and macrophages. Atherosclerosis, 371, 1–13.
      5. Rahman,N. et al. (2023) Mobilisation and analyses of publicly available SARS-CoV-2 data for pandemic responses.
        6. diff --git a/galaxy/index.html b/galaxy/index.html index e21e12a4b..8559fa25c 100644 --- a/galaxy/index.html +++ b/galaxy/index.html @@ -79,9 +79,9 @@

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        Oct 8, 2023

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        Oct 22, 2023

        @@ -97,15 +97,15 @@

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        Oct 6, 2023

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        Oct 15, 2023

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        Oct 5, 2023

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        Oct 8, 2023

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        Oct 6, 2023

        @@ -169,15 +169,15 @@

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        Sep 26, 2023

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        Oct 5, 2023

        @@ -193,15 +193,15 @@

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        - + -

        Sep 25, 2023

        +

        Oct 1, 2023

        @@ -217,7 +217,7 @@

        - UseGalaxy.eu Tool Updates for 2023-09-25 + UseGalaxy.eu Tool Updates for 2023-10-01

        @@ -1736,7 +1736,7 @@

        Training

        We regularly provide workshops

        - +

        diff --git a/galaxy/news.html b/galaxy/news.html index 1a56bc687..5c097199a 100644 --- a/galaxy/news.html +++ b/galaxy/news.html @@ -48,6 +48,138 @@ + tags.push(`tools`) + + tags.push(`Freiburg`) + + if (!userTag ? true : tags.includes(userTag)) { + counter++ + + div = ` + ${counter === 3 ? '
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        + + + +

        UseGalaxy.eu Tool Updates for 2023-10-22

        +         + + + + + + + + + + + + + + + + + + October 22, 2023 + + + Freiburg + + + + tools + + + +
        +
        +

        On 2023-10-22, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #412

        +
        +
        +
        +
        + ${counter === 3 ? '
        ' : ''} + ` + if (counter === 3) { + counter = 0 + } + + news.append(div); + } + tags = [] + + + + tags.push(`tools`) + + tags.push(`Freiburg`) + + if (!userTag ? true : tags.includes(userTag)) { + counter++ + + div = ` + ${counter === 3 ? '
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        +
        +
        + + + +

        UseGalaxy.eu Tool Updates for 2023-10-15

        +         + + + + + + + + + + + + + + + + + + October 15, 2023 + + + Freiburg + + + + tools + + + +
        +
        +

        On 2023-10-15, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #411

        +
        +
        +
        +
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        ' : ''} + ` + if (counter === 3) { + counter = 0 + } + + news.append(div); + } + tags = [] + + + tags.push(`tools`) tags.push(`Freiburg`) diff --git a/index-materials.html b/index-materials.html index 20765554c..a70b4df35 100644 --- a/index-materials.html +++ b/index-materials.html @@ -92,6 +92,7 @@

        Join the Materials Galaxy Community

        Tools

        diff --git a/index-metabolomics.html b/index-metabolomics.html index bbae25577..81de3ea56 100644 --- a/index-metabolomics.html +++ b/index-metabolomics.html @@ -1199,9 +1199,9 @@

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        - + -

        Oct 8, 2023

        +

        Oct 22, 2023

        @@ -1217,15 +1217,15 @@

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        Oct 6, 2023

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        Oct 15, 2023

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        Oct 5, 2023

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        Oct 8, 2023

        @@ -1265,15 +1265,15 @@

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        +

        Oct 6, 2023

        @@ -1289,15 +1289,15 @@

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        - + -

        Sep 26, 2023

        +

        Oct 5, 2023

        @@ -1313,15 +1313,15 @@

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        Sep 25, 2023

        +

        Oct 1, 2023

        @@ -1337,7 +1337,7 @@

        - UseGalaxy.eu Tool Updates for 2023-09-25 + UseGalaxy.eu Tool Updates for 2023-10-01

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        Oct 8, 2023

        +

        Oct 22, 2023

        @@ -1165,15 +1165,15 @@

        - UseGalaxy.eu Tool Updates for 2023-10-08 + UseGalaxy.eu Tool Updates for 2023-10-22

        - + -

        Oct 6, 2023

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        Oct 15, 2023

        @@ -1189,15 +1189,15 @@

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        Oct 5, 2023

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        Oct 8, 2023

        @@ -1213,15 +1213,15 @@

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        Oct 1, 2023

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        Oct 6, 2023

        @@ -1237,15 +1237,15 @@

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        Sep 26, 2023

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        Oct 5, 2023

        @@ -1261,15 +1261,15 @@

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        Sep 25, 2023

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        Oct 1, 2023

        @@ -1285,7 +1285,7 @@

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        Oct 22, 2023

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        Oct 6, 2023

        +

        Oct 15, 2023

        @@ -1057,15 +1057,15 @@

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        - + -

        Oct 5, 2023

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        Oct 8, 2023

        @@ -1081,15 +1081,15 @@

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        Oct 1, 2023

        +

        Oct 6, 2023

        @@ -1105,15 +1105,15 @@

        - UseGalaxy.eu Tool Updates for 2023-10-01 + UseGalaxy.eu Tool Updates for 2023-10-06

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        Sep 26, 2023

        +

        Oct 5, 2023

        @@ -1129,15 +1129,15 @@

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        - + -

        Sep 25, 2023

        +

        Oct 1, 2023

        @@ -1153,7 +1153,7 @@

        - UseGalaxy.eu Tool Updates for 2023-09-25 + UseGalaxy.eu Tool Updates for 2023-10-01

        diff --git a/news.html b/news.html index 18d26e7dd..6514a615c 100644 --- a/news.html +++ b/news.html @@ -147,6 +147,138 @@ + tags.push(`tools`) + + tags.push(`Freiburg`) + + if (!userTag ? true : tags.includes(userTag)) { + counter++ + + div = ` + ${counter === 3 ? '
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        +
        +
        + + + +

        UseGalaxy.eu Tool Updates for 2023-10-22

        +         + + + + + + + + + + + + + + + + + + October 22, 2023 + + + Freiburg + + + + tools + + + +
        +
        +

        On 2023-10-22, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #412

        +
        +
        +
        +
        + ${counter === 3 ? '
        ' : ''} + ` + if (counter === 3) { + counter = 0 + } + + news.append(div); + } + tags = [] + + + + tags.push(`tools`) + + tags.push(`Freiburg`) + + if (!userTag ? true : tags.includes(userTag)) { + counter++ + + div = ` + ${counter === 3 ? '
        ' : ''} +
        +
        +
        + + + +

        UseGalaxy.eu Tool Updates for 2023-10-15

        +         + + + + + + + + + + + + + + + + + + October 15, 2023 + + + Freiburg + + + + tools + + + +
        +
        +

        On 2023-10-15, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #411

        +
        +
        +
        +
        + ${counter === 3 ? '
        ' : ''} + ` + if (counter === 3) { + counter = 0 + } + + news.append(div); + } + tags = [] + + + tags.push(`tools`) tags.push(`Freiburg`) diff --git a/people.html b/people.html index 794212978..f1309ea60 100644 --- a/people.html +++ b/people.html @@ -1086,6 +1086,53 @@
        Laila Los
        + + +
    +
    + + + + +
    +
    +
    + Polina Polunina's Picture +
    Polina Polunina
    +

    M.Sc. Inf., Researcher

    + +
    diff --git a/posts/2023/10/08/tool-update/index.html b/posts/2023/10/08/tool-update/index.html index 17da0634e..cdfcaf7d4 100644 --- a/posts/2023/10/08/tool-update/index.html +++ b/posts/2023/10/08/tool-update/index.html @@ -158,6 +158,10 @@

    UseGalaxy.eu Tool Updates for 2023-10-08

    + + » + +
    diff --git a/posts/2023/10/08/tool-update/plain.html b/posts/2023/10/08/tool-update/plain.html index bc9332d76..034ba7678 100644 --- a/posts/2023/10/08/tool-update/plain.html +++ b/posts/2023/10/08/tool-update/plain.html @@ -48,6 +48,10 @@

    UseGalaxy.eu Tool Updates for 2023-10-08

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    diff --git a/posts/2023/10/15/tool-update/index.html b/posts/2023/10/15/tool-update/index.html new file mode 100644 index 000000000..2a0beefc7 --- /dev/null +++ b/posts/2023/10/15/tool-update/index.html @@ -0,0 +1,457 @@ + + + + Galaxy Europe | UseGalaxy.eu Tool Updates for 2023-10-15 + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
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    UseGalaxy.eu Tool Updates for 2023-10-15

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    On 2023-10-15, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #411

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    Metabolomics

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    QIIME 2

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    • qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
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    Proteomics

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    Phylogenetics

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    Assembly

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    Mothur

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    RNA Analysis

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    None

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    • data_manager_diamond_database_builder was updated to 4a08b7b76b78
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    hca_sc_scanpy_tools

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    Supported by

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    + + + + + +
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    + + + « + + +
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    UseGalaxy.eu Tool Updates for 2023-10-15

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    +
    +
    + + + » + + +
    +
    +
    +
    +
    + + +
    +
    +
    + + Oct 15, 2023 + + + + +
    + + Freiburg + + tools + + + + + +
    +
    +
    +
    +
    + +
    +
    +
    +

    On 2023-10-15, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #411

    + +

    Metabolomics

    + + + +

    QIIME 2

    + +
      +
    • qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
      • +
    + +

    Proteomics

    + + + +

    Annotation

    + + + +

    Phylogenetics

    + + + +

    Convert Formats

    + + + +

    Graph/Display Data

    + + + +

    Assembly

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    Mothur

    + + + +

    RNA Analysis

    + + + +

    None

    + +
      +
    • data_manager_diamond_database_builder was updated to 4a08b7b76b78
      • +
    + +

    hca_sc_scanpy_tools

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    Supported by

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    UseGalaxy.eu Tool Updates for 2023-10-22

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    On 2023-10-22, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #412

    + +

    QIIME 2

    + +
      +
    • qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
      • +
    + +

    Proteomics

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    None

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    • data_manager_diamond_database_builder was updated to 4a08b7b76b78
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    Supported by

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    UseGalaxy.eu Tool Updates for 2023-10-22

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    On 2023-10-22, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #412

    + +

    QIIME 2

    + +
      +
    • qiime2__deblur__denoise_16S was updated to 2572fc0f88f2
      • +
    + +

    Proteomics

    + + + +

    None

    + +
      +
    • data_manager_diamond_database_builder was updated to 4a08b7b76b78
      • +
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    Supported by

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    Oct 8, 2023

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    Oct 22, 2023

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    - UseGalaxy.eu Tool Updates for 2023-10-08 + UseGalaxy.eu Tool Updates for 2023-10-22

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    Oct 6, 2023

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    Oct 15, 2023

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    - UseGalaxy.eu Tool Updates for 2023-10-06 + UseGalaxy.eu Tool Updates for 2023-10-15

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    Oct 5, 2023

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    Oct 8, 2023

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    - UseGalaxy.eu Tool Updates for 2023-10-05 + UseGalaxy.eu Tool Updates for 2023-10-08

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    Oct 1, 2023

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    Oct 6, 2023

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    - UseGalaxy.eu Tool Updates for 2023-10-01 + UseGalaxy.eu Tool Updates for 2023-10-06

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    Sep 26, 2023

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    Oct 5, 2023

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    - UseGalaxy.eu Tool Updates for 2023-09-26 + UseGalaxy.eu Tool Updates for 2023-10-05

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    Sep 25, 2023

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    Oct 1, 2023

    @@ -182,7 +182,7 @@

    - UseGalaxy.eu Tool Updates for 2023-09-25 + UseGalaxy.eu Tool Updates for 2023-10-01