On 2023-10-15, the tools on UseGalaxy.eu were updated by our automated tool update and installation process in Jenkins Build #411
+ +Metabolomics
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- dimet_abundance_plot was updated to c9040bdb918c +
- dimet_differential_analysis was updated to c46d33411495 +
- dimet_differential_multigroup_analysis was updated to e88cf5618b40 +
- dimet_enrichment_plot was updated to 254408bfc5c0 +
- dimet_isotopologues_plot was updated to a3349c105bd0 +
- dimet_metabologram was updated to a7d3e880e74c +
- dimet_pca_analysis was updated to 04d213632103 +
- dimet_pca_plot was updated to 952808ffa842 +
- dimet_timecourse_analysis was updated to cb8c4ae59da9 +
- biotransformer was updated to e5fcba090b10 +
- matchms_convert was updated to d4609fbf8ca3 +
- matchms_filtering was updated to 13de8005adba +
- matchms_fingerprint_similarity was updated to df85b26201d1 +
- matchms_formatter was updated to ae45992f969e +
- matchms_metadata_export was updated to 7504a8f93699 +
- matchms_metadata_match was updated to b5b360897004 +
- matchms_networking was updated to 9982b85ff4e7 +
- matchms_similarity was updated to 872d8040f713 +
- matchms_spectral_similarity was updated to 3f96c93f8566 +
- matchms_split was updated to 97be845e45c2 +
- msmetaenhancer was updated to 3e2cb0bc6959 +
- ramclustr was updated to 09cabbc3d12d +
- ramclustr_define_experiment was updated to 7bbdcce50541 +
- recetox_aplcms_align_features was updated to 2b6bfa234d8b +
- recetox_aplcms_compute_clusters was updated to 550667ce03f1 +
- recetox_aplcms_compute_template was updated to e2dc815e1b2c +
- recetox_aplcms_correct_time was updated to d69ec1171d71 +
- recetox_aplcms_generate_feature_table was updated to 32b66fb6a6a0 +
- recetox_aplcms_merge_known_table was updated to 8ecb609cc265 +
- recetox_aplcms_recover_weaker_signals was updated to a9bb2ccc53de +
- recetox_aplcms_remove_noise was updated to 12bf74dd09f1 +
- recetox_xmsannotator_advanced was updated to 50ac7359ffe7 +
- riassigner was updated to 8c5e65adf694 +
- rmassbank was updated to c1a9c990d4b0 +
- waveica was updated to dbbedb14b44c +
QIIME 2
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- qiime2__deblur__denoise_16S was updated to 2572fc0f88f2 +
Proteomics
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- msstatstmt was updated to fd3dc69b78ff +
- openms_openpepxl was updated to a2a842b00f9c +
- openms_percolatoradapter was updated to 0fc9ae55bcfc +
- openms_percolatoradapter was updated to e7881a82b56d +
- openms_xfdr was updated to 81402a5e4173 +
- openms_xfdr was updated to 9a6e3bb0f358 +
Annotation
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- cpt_annotation_table was updated to 6998c2570145 +
- cpt_gbk_renumber was updated to 8cac332dbc77 +
- cpt_genome_editor was updated to 78ce8a1a8fd1 +
- cpt_gff_extract_seq was updated to ab40380424c9 +
- cpt_gff_rebase was updated to 4f4b413056f6 +
- cpt_intersect_adjacent was updated to 7e393668b4b9 +
- cpt_intron_detection was updated to 0a98d5259ef0 +
- cpt_lipory was updated to b79df4966ebb +
- cpt_phageqc_annotations was updated to c3140b08d703 +
- cpt_require_shine was updated to a6dc48930318 +
- braker3 was updated to bd103884a09c +
Phylogenetics
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- cpt_related_genomes_nuc was updated to 5a5fe0a6f78d +
- cpt_related_genomes_prot was updated to ebcc87a27f9c +
- cpt_xmfa_to_table was updated to 06d8e28d0bd7 +
Convert Formats
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- cpt_gbk_to_5col was updated to 1bdd481d5c25 +
- cpt_gbk_to_gff was updated to bb6332a85aa6 +
- cpt_gff_split was updated to 8bd03ba8510a +
- cpt_gff_to_gbk was updated to 35a6c466e270 +
Graph/Display Data
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- cpt_linear_genome_plot was updated to e923c686ead9 +
Assembly
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- hifiasm was updated to 60024a528cbd +
- hapog was updated to 7d56a813fd24 +
- shovill was updated to ee17a294d3a3 +
Mothur
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- mothur_unifrac_unweighted was updated to 6a622b34394a +
RNA Analysis
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- edger was updated to 070900306913 +
None
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- data_manager_diamond_database_builder was updated to 4a08b7b76b78 +
hca_sc_scanpy_tools
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- anndata_ops was updated to 2e8022f1923c +
- scanpy_compute_graph was updated to f776e3ed3c03 +
- scanpy_filter_cells was updated to 356fa6c27341 +
- scanpy_filter_genes was updated to 9a36525a8425 +
- scanpy_find_cluster was updated to d19920419c78 +
- scanpy_find_markers was updated to f0f78d29130f +
- scanpy_find_variable_genes was updated to 273faaa2bd69 +
- scanpy_integrate_bbknn was updated to 12fc7e093094 +
- scanpy_integrate_combat was updated to c6611adc8f4a +
- scanpy_integrate_harmony was updated to 18e01a7c55c6 +
- scanpy_integrate_mnn was updated to e9788746e0f6 +
- scanpy_multiplet_scrublet was updated to fadc4fbf8025 +
- scanpy_normalise_data was updated to 4bbb2179521c +
- scanpy_parameter_iterator was updated to 99301e5feddc +
- scanpy_plot_embed was updated to bfb4d298d75f +
- scanpy_plot_scrublet was updated to 4276a6dea8d1 +
- scanpy_plot_trajectory was updated to 9d746af31fe8 +
- scanpy_read_10x was updated to af6ecb5adcc1 +
- scanpy_regress_variable was updated to bd65279c7ddc +
- scanpy_run_diffmap was updated to afec1d52b87d +
- scanpy_run_dpt was updated to 2f569aa8c920 +
- scanpy_run_fdg was updated to cef0ddd01875 +
- scanpy_run_paga was updated to 6b7a5d15a89b +
- scanpy_run_pca was updated to f0eecf608220 +
- scanpy_run_tsne was updated to 64cd33540fee +
- scanpy_run_umap was updated to 9984f48961d0 +
- scanpy_scale_data was updated to bf30bd6355da +