From 7831ff376cffd05c36921959cba28e4ed31dec6e Mon Sep 17 00:00:00 2001 From: cat-bro Date: Mon, 18 Dec 2023 10:54:09 +1100 Subject: [PATCH] tpv update 20231218 --- .../total_perspective_vortex/tools.yml | 23 ++++++++++++++++++- 1 file changed, 22 insertions(+), 1 deletion(-) diff --git a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml index b6ae7d0fc..ce55cc9ab 100644 --- a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml +++ b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml @@ -1289,6 +1289,16 @@ tools: toolshed.g2.bx.psu.edu/repos/iuc/gemini_load/gemini_load/.*: cores: 3 mem: 11.5 + toolshed.g2.bx.psu.edu/repos/iuc/geneiobio/gene_iobio_display_generation_iframe/.*: + params: + singularity_enabled: true + toolshed.g2.bx.psu.edu/repos/iuc/getorganelle/get_annotated_regions_from_gb/.*: + params: + singularity_enabled: true + toolshed.g2.bx.psu.edu/repos/iuc/getorganelle/get_organelle_from_reads/.*: + mem: 10 + params: + singularity_enabled: true toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_heatmap2/ggplot2_heatmap2/.*: mem: 12 toolshed.g2.bx.psu.edu/repos/iuc/ggplot2_point/ggplot2_point/.*: @@ -1354,7 +1364,11 @@ tools: cores: 7 mem: 45 toolshed.g2.bx.psu.edu/repos/iuc/humann2/humann2/.*: - inherits: toolshed.g2.bx.psu.edu/repos/iuc/humann/humann/.* + params: + singularity_enabled: true + scheduling: + prefer: + - pulsar toolshed.g2.bx.psu.edu/repos/iuc/hybpiper/hybpiper/.*: params: singularity_enabled: true @@ -1387,6 +1401,7 @@ tools: cores: 1 mem: 3.8 toolshed.g2.bx.psu.edu/repos/iuc/isoformswitchanalyzer/isoformswitchanalyzer/.*: + mem: 10 params: singularity_enabled: true toolshed.g2.bx.psu.edu/repos/iuc/ivar_consensus/ivar_consensus/.*: @@ -2635,6 +2650,12 @@ tools: toolshed.g2.bx.psu.edu/repos/iuc/vcf2maf/vcf2maf/.*: cores: 6 mem: 23.0 + toolshed.g2.bx.psu.edu/repos/iuc/windowmasker/windowmasker_mkcounts/.*: + params: + singularity_enabled: true + toolshed.g2.bx.psu.edu/repos/iuc/windowmasker/windowmasker_ustat/.*: + params: + singularity_enabled: true toolshed.g2.bx.psu.edu/repos/iuc/yahs/yahs/.*: params: singularity_enabled: true