From e4fc7b12e36d33e2983c9882c501c932b31ecbc7 Mon Sep 17 00:00:00 2001 From: Mike Thang Date: Mon, 13 Nov 2023 14:53:54 +1000 Subject: [PATCH 1/2] Increase the number of CPUs for FGENESH tools --- .../production/total_perspective_vortex/tools.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml index a6578736a..e01209759 100644 --- a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml +++ b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml @@ -2532,8 +2532,8 @@ tools: not user or not 'cellranger' in [role.name for role in user.all_roles() if not role.deleted] fail: Your account has not been given access to cellranger. Contact help@genome.edu.au if you think this is in error. fgenesh: - cores: 6 - mem: 10 + cores: 24 + mem: 16 params: singularity_enabled: true rules: From 369cabf18f57c818256f925987380c7570d9352f Mon Sep 17 00:00:00 2001 From: Mike Thang Date: Mon, 13 Nov 2023 14:58:03 +1000 Subject: [PATCH 2/2] Increase the number of CPUs and memory for Fgenesh tools --- .../production/total_perspective_vortex/tools.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml index a97c90f4c..0f3a237f6 100644 --- a/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml +++ b/files/galaxy/dynamic_job_rules/production/total_perspective_vortex/tools.yml @@ -2657,7 +2657,7 @@ tools: fail: Your account has not been given access to cellranger. Contact help@genome.edu.au if you think this is in error. fgenesh: cores: 24 - mem: 16 + mem: 12 params: singularity_enabled: true rules: