INSTALL.txt

* Install Anaconda (Python3)
* Install pydicom
  pip install pydicom

* Install OpenCV 3.2.0 or above
  Download OpenCV source files

  cd ~/opencvSource/opencv-3.2.0/
  mkdir build
  cd build

  cmake -D CMAKE_BUILD_TYPE=RELEASE \
    -D CMAKE_INSTALL_PREFIX=/opt/opencv \
    -D INSTALL_PYTHON_EXAMPLES=OFF \
    -D INSTALL_C_EXAMPLES=ON \
    -D PYTHON_EXECUTABLE=~/anaconda3/bin/python \
    -D BUILD_EXAMPLES=ON ..

  make -j4
  make install

  // OpenCV will be installed to the path specified in CMAKE_INSTALL_PREFIX

* Compile GrabCut3d
  // Edit the Makefile located in /renal-segmentation/CppSource/GrabCut3d
  // If you specify a different path in CMAKE_INSTALL_PREFIX update the following variable.
  opencv_lib_path = opt/opencv/lib
  

* Run the program on uncompressed dicom files.
  Usage:
  python renalSegment.py <input_dir> <output_dir>

  Example Usage:
  python renalSegment.py /data/DicomIn /data/DicomOut