diff --git a/README.md b/README.md index 36667a5..b3e9ddf 100644 --- a/README.md +++ b/README.md @@ -34,6 +34,12 @@ In summary, QuaC performs the following: Full documentation, including installation and how to run QuaC, is available at . +## Citing QuaC + +If you use QuaC, please cite: + +Gajapathy et al., (2023). QuaC: A Pipeline Implementing Quality Control Best Practices for Genome Sequencing and Exome Sequencing Data. Journal of Open Source Software, 8(90), 5313, https://doi.org/10.21105/joss.05313 + ## Repo owner - **Mana**valan Gajapathy diff --git a/docs/faq.md b/docs/faq.md index a645a66..88982e5 100644 --- a/docs/faq.md +++ b/docs/faq.md @@ -15,3 +15,8 @@ from it's last state. * If `--cli_cluster_config` was used, logs from the snakemake process are stored in the directory provided using `--log_dir`. Else, logs will be directed to stderr/stdout and not stored in a file. * If `--snakemake_cluster_config` was used, logs for the jobs triggered by snakemake workflow are stored in sub-directory `rule_logs/` under the directory provided using `--log_dir`. Else, logs will be directed to stderr/stdout. +## How to cite QuaC? + +Please cite this article: + +Gajapathy et al., (2023). QuaC: A Pipeline Implementing Quality Control Best Practices for Genome Sequencing and Exome Sequencing Data. Journal of Open Source Software, 8(90), 5313, https://doi.org/10.21105/joss.05313 diff --git a/docs/index.md b/docs/index.md index 71388c3..f36790d 100644 --- a/docs/index.md +++ b/docs/index.md @@ -75,3 +75,8 @@ Optionally QuaC can also utilize QC results produced by the tools listed below w * At CGDS, these optional tools were run by our small_variant_caller_pipeline. +## Citing QuaC + +If you use QuaC, please cite: + +Gajapathy et al., (2023). QuaC: A Pipeline Implementing Quality Control Best Practices for Genome Sequencing and Exome Sequencing Data. Journal of Open Source Software, 8(90), 5313, https://doi.org/10.21105/joss.05313