From d9b9f76abf0bca17585630a03281e898256f07f6 Mon Sep 17 00:00:00 2001 From: Thomas Lin Pedersen Date: Wed, 28 Sep 2022 13:21:18 +0200 Subject: [PATCH] run revdepcheck --- cran-comments.md | 14 ++++++++++++-- revdep/README.md | 6 ++++++ revdep/cran.md | 10 +++++++++- revdep/problems.md | 42 +++++++++++++++++++++++++++++++++++++++++- 4 files changed, 68 insertions(+), 4 deletions(-) diff --git a/cran-comments.md b/cran-comments.md index 88e65334..ee4857bc 100644 --- a/cran-comments.md +++ b/cran-comments.md @@ -1,8 +1,18 @@ -Small release with a lot of upkeep and a few new features and bug fixes +Big minor release with a lot of bug fixes and a small selection of minor +features. We detected a single reverse dependency failure. The maintainer of the +package has been notified and a fix is expected on CRAN this week. ## revdepcheck results We checked 66 reverse dependencies (65 from CRAN + 1 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. - * We saw 0 new problems + * We saw 1 new problems * We failed to check 0 packages + +Issues with CRAN packages are summarised below. + +### New problems +(This reports the first line of each new failure) + +* cubble + checking re-building of vignette outputs ... WARNING diff --git a/revdep/README.md b/revdep/README.md index aed2d4fb..8f229790 100644 --- a/revdep/README.md +++ b/revdep/README.md @@ -6,3 +6,9 @@ |:-------|:-------|:-----|:-------|:----| |NA |? | | | | +## New problems (1) + +|package |version |error |warning |note | +|:----------------------------|:-------|:-----|:-------|:----| +|[cubble](problems.md#cubble) |0.1.1 | |__+1__ | | + diff --git a/revdep/cran.md b/revdep/cran.md index 5149ce51..a2c1f748 100644 --- a/revdep/cran.md +++ b/revdep/cran.md @@ -2,6 +2,14 @@ We checked 66 reverse dependencies (65 from CRAN + 1 from Bioconductor), comparing R CMD check results across CRAN and dev versions of this package. - * We saw 0 new problems + * We saw 1 new problems * We failed to check 0 packages +Issues with CRAN packages are summarised below. + +### New problems +(This reports the first line of each new failure) + +* cubble + checking re-building of vignette outputs ... WARNING + diff --git a/revdep/problems.md b/revdep/problems.md index 9a207363..72167936 100644 --- a/revdep/problems.md +++ b/revdep/problems.md @@ -1 +1,41 @@ -*Wow, no problems at all. :)* \ No newline at end of file +# cubble + +
+ +* Version: 0.1.1 +* GitHub: https://github.com/huizezhang-sherry/cubble +* Source code: https://github.com/cran/cubble +* Date/Publication: 2022-06-02 12:30:06 UTC +* Number of recursive dependencies: 136 + +Run `cloud_details(, "cubble")` for more info + +
+ +## Newly broken + +* checking re-building of vignette outputs ... WARNING + ``` + Error(s) in re-building vignettes: + --- re-building ‘aggregation.Rmd’ using rmarkdown + `summarise()` has grouped output by 'id'. You can override using the `.groups` + argument. + `summarise()` has grouped output by 'cluster', 'id'. You can override using the + `.groups` argument. + `geom_smooth()` using method = 'gam' and formula 'y ~ s(x, bs = "cs")' + Adding missing grouping variables: `id` + Quitting from lines 123-131 (aggregation.Rmd) + Error: processing vignette 'aggregation.Rmd' failed with diagnostics: + ... + The key variable is named differently in the two datasets. Coerce the key to id + to bind them together. + Only bind the common variables from both datasets. + --- finished re-building ‘matching.Rmd’ + + SUMMARY: processing the following file failed: + ‘aggregation.Rmd’ + + Error: Vignette re-building failed. + Execution halted + ``` +