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config_gisaid.json
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{
"validate_SID": true,
"source": "GISAID",
"title": "Audacity",
"customNames": {
"name": "GISAID accession",
"meta_pangolin_lineage": "PANGO lineage",
"num_tips": "Descendant sequences"
},
"name_accessor": "meta_name2",
"keys_to_display": [
"name",
"meta_date",
"meta_pangolin_lineage",
"meta_country",
"meta_subregion",
"genotype"
],
"overlay": "<h1 class='font-bold mb-3 text-xl'>The sequences</h1>\n\n <p>\n This website displays sequence data contributed to the GISAID database by contributors around the world. You can find the acknowledgements for a specific sequence by clicking on it.\n \n We gratefully acknowledge all data contributors, i.e. the Authors and their Originating laboratories responsible for obtaining the specimens, and their Submitting laboratories for generating the genetic sequence and metadata and sharing via the GISAID Initiative<sup>1</sup> on which this research is based.\n </p>\n <p class='mt-3 text-sm'>\n 1. Elbe, S., and Buckland-Merrett, G. (2017) Data, disease and diplomacy: GISAID’s innovative contribution to global health. Global Challenges, 1:33-46. DOI: <a class='underline' href='https://doi.org/10.1002/gch2.1018'>10.1002/gch2.1018</a> PMCID: <a class='underline' href='https://pubmed.ncbi.nlm.nih.gov/31565258/'>31565258</a>\n </p>\n\n <h1 class='font-bold mb-3 text-xl mt-5'>The tree</h1>\n <p>This tree is built by the GISAID Initiative.</p> \n\n <h1 class='font-bold mb-3 text-xl mt-5'>This visualisation</h1>\n <p>AudacityTaxonium was built by <a class='text-blue-800 underline' href='https://github.com/theosanderson'>Theo Sanderson</a>. It uses <a class='text-blue-800 underline' href='//taxonium.org'>Taxonium</a>, a custom framework for exploration of large trees. It is hosted by the GISAID Initiative.</p>",
"search_types": [
{ "name": "meta_name2", "label": "Name", "type": "text_match" },
{ "name": "name", "label": "EPI_ISL", "type": "text_match" },
{
"name": "meta_pangolin_lineage",
"label": "PANGO lineage",
"type": "text_exact"
},
{ "name": "meta_country", "label": "Country", "type": "text_match" },
{ "name": "mutation", "label": "Mutation", "type": "mutation" },
{ "name": "revertant", "label": "Revertant", "type": "revertant" }
],
"colorBy": {
"colorByOptions": [
"meta_pangolin_lineage",
"meta_country",
"genotype",
"None"
]
},
"colorMapping": {
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