From 1240e488d1a7e37708b47df5e2728b5c8f9db09d Mon Sep 17 00:00:00 2001 From: Tim Vaughan <vaughant@bs-mbpr538.d.ethz.ch> Date: Tue, 5 Oct 2021 17:41:45 +0200 Subject: [PATCH] Improved unit test. --- test/bacter/util/BacterACGLogReaderTest.java | 14 +++----------- 1 file changed, 3 insertions(+), 11 deletions(-) diff --git a/test/bacter/util/BacterACGLogReaderTest.java b/test/bacter/util/BacterACGLogReaderTest.java index 88621be..7c49a22 100644 --- a/test/bacter/util/BacterACGLogReaderTest.java +++ b/test/bacter/util/BacterACGLogReaderTest.java @@ -3,27 +3,18 @@ import bacter.ConversionGraph; import beast.util.Randomizer; import beast.util.XMLParser; -import beast.util.XMLParserException; import org.junit.Test; -import org.xml.sax.SAXException; -import test.beast.beast2vs1.trace.Expectation; -import test.beast.beast2vs1.trace.LogAnalyser; -import javax.xml.parsers.ParserConfigurationException; import java.io.File; -import java.io.IOException; import java.nio.file.Files; import java.nio.file.Paths; -import java.util.ArrayList; -import java.util.List; -import static org.junit.Assert.assertTrue; +import static org.junit.Assert.assertEquals; public class BacterACGLogReaderTest { @Test public void test() throws Exception { - Randomizer.setSeed(1); XMLParser parser = new XMLParser(); @@ -33,8 +24,9 @@ public void test() throws Exception { BacterACGLogReader logReader = new BacterACGLogReader(new File("simulateACGs2taxon.trees"), 0.0); - System.out.println("ACG count: " + logReader.getACGCount()); + assertEquals(100, logReader.getACGCount()); + // The following simply tests whether the ACGs can be loaded without error: System.out.println("Root ages:"); for (ConversionGraph acg : logReader) System.out.println(acg.getRoot().getHeight());