diff --git a/CITATION.cff b/CITATION.cff index 7fd7a06..f12aecb 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -1,15 +1,46 @@ -# ----------------------------------------------------------- -# CITATION file created with {cffr} R package, v0.5.0 +# -------------------------------------------- +# CITATION file created with {cffr} R package # See also: https://docs.ropensci.org/cffr/ -# ----------------------------------------------------------- +# -------------------------------------------- cff-version: 1.2.0 message: 'To cite package "kairos" in publications use:' type: software license: GPL-3.0-or-later title: 'kairos: Analysis of Chronological Patterns from Archaeological Count Data' -version: 2.1.0 +version: 2.1.1 doi: 10.5281/zenodo.5653896 +identifiers: +- description: The concept DOI. + type: doi + value: 10.5281/zenodo.5653896 +- description: The versioned DOI for version 1.0.0. + type: doi + value: 10.5281/zenodo.5653897 +- description: The versioned DOI for version 1.0.1. + type: doi + value: 10.5281/zenodo.6349207 +- description: The versioned DOI for version 1.1.0. + type: doi + value: 10.5281/zenodo.6659732 +- description: The versioned DOI for version 1.2.0. + type: doi + value: 10.5281/zenodo.7307327 +- description: The versioned DOI for version 2.0.0. + type: doi + value: 10.5281/zenodo.8301347 +- description: The versioned DOI for version 2.0.1. + type: doi + value: 10.5281/zenodo.8318621 +- description: The versioned DOI for version 2.0.2. + type: doi + value: 10.5281/zenodo.10209640 +- description: The versioned DOI for version 2.1.0. + type: doi + value: 10.5281/zenodo.10711260 +- description: The Software Heritage identifier for version 1.0.1. + type: swh + value: swh:1:rel:508add25987e0fc9f3f29793df5578337ae2c338 abstract: A toolkit for absolute and relative dating and analysis of chronological patterns. This package includes functions for chronological modeling and dating of archaeological assemblages from count data. It provides methods for matrix seriation. @@ -31,13 +62,12 @@ preferred-citation: orcid: https://orcid.org/0000-0001-5759-4944 affiliation: Université Bordeaux Montaigne year: '2024' - location: - name: Pessac, France - notes: R package version 2.1.0 - url: https://packages.tesselle.org/kairos/ - doi: 10.5281/zenodo.5653896 institution: name: Université Bordeaux Montaigne + address: Pessac, France + notes: R package version 2.1.1 + url: https://packages.tesselle.org/kairos/ + doi: 10.5281/zenodo.5653896 repository: https://CRAN.R-project.org/package=kairos repository-code: https://github.com/tesselle/kairos url: https://packages.tesselle.org/kairos/ @@ -60,11 +90,10 @@ references: url: https://www.R-project.org/ authors: - name: R Core Team - location: - name: Vienna, Austria - year: '2024' institution: name: R Foundation for Statistical Computing + address: Vienna, Austria + year: '2024' version: '>= 3.5' - type: software title: dimensio @@ -79,13 +108,14 @@ references: orcid: https://orcid.org/0000-0001-5759-4944 affiliation: Université Bordeaux Montaigne year: '2024' - version: '>= 0.6.0' + doi: 10.32614/CRAN.package.dimensio + version: '>= 0.8.0' - type: software title: aion abstract: 'aion: Archaeological Time Series' notes: Imports url: https://packages.tesselle.org/aion/ - repository: https://CRAN.R-project.org/package=aion + repository: https://tesselle.r-universe.dev authors: - family-names: Frerebeau given-names: Nicolas @@ -98,7 +128,8 @@ references: orcid: https://orcid.org/0000-0002-1011-1244 affiliation: Universität Bern year: '2024' - version: '>= 1.0.2' + doi: 10.32614/CRAN.package.aion + version: '>= 1.0.4' - type: software title: arkhe abstract: 'arkhe: Tools for Cleaning Rectangular Data' @@ -112,6 +143,7 @@ references: orcid: https://orcid.org/0000-0001-5759-4944 affiliation: Université Bordeaux Montaigne year: '2024' + doi: 10.32614/CRAN.package.arkhe version: '>= 1.6.0' - type: software title: extraDistr @@ -123,50 +155,51 @@ references: - family-names: Wolodzko given-names: Tymoteusz year: '2024' + doi: 10.32614/CRAN.package.extraDistr - type: software title: grDevices abstract: 'R: A Language and Environment for Statistical Computing' notes: Imports authors: - name: R Core Team - location: - name: Vienna, Austria - year: '2024' institution: name: R Foundation for Statistical Computing + address: Vienna, Austria + year: '2024' + doi: 10.32614/CRAN.package.grDevices - type: software title: methods abstract: 'R: A Language and Environment for Statistical Computing' notes: Imports authors: - name: R Core Team - location: - name: Vienna, Austria - year: '2024' institution: name: R Foundation for Statistical Computing + address: Vienna, Austria + year: '2024' + doi: 10.32614/CRAN.package.methods - type: software title: stats abstract: 'R: A Language and Environment for Statistical Computing' notes: Imports authors: - name: R Core Team - location: - name: Vienna, Austria - year: '2024' institution: name: R Foundation for Statistical Computing + address: Vienna, Austria + year: '2024' + doi: 10.32614/CRAN.package.stats - type: software title: utils abstract: 'R: A Language and Environment for Statistical Computing' notes: Imports authors: - name: R Core Team - location: - name: Vienna, Austria - year: '2024' institution: name: R Foundation for Statistical Computing + address: Vienna, Austria + year: '2024' + doi: 10.32614/CRAN.package.utils - type: software title: folio abstract: 'folio: Datasets for Teaching Archaeology and Paleontology' @@ -180,6 +213,7 @@ references: orcid: https://orcid.org/0000-0001-5759-4944 affiliation: Université Bordeaux Montaigne year: '2024' + doi: 10.32614/CRAN.package.folio version: '>= 1.4.0' - type: software title: knitr @@ -193,6 +227,7 @@ references: email: xie@yihui.name orcid: https://orcid.org/0000-0003-0645-5666 year: '2024' + doi: 10.32614/CRAN.package.knitr - type: software title: markdown abstract: 'markdown: Render Markdown with ''commonmark''' @@ -209,6 +244,7 @@ references: - family-names: Horner given-names: Jeffrey year: '2024' + doi: 10.32614/CRAN.package.markdown - type: software title: rsvg abstract: 'rsvg: Render SVG Images into PDF, PNG, (Encapsulated) PostScript, or @@ -222,6 +258,7 @@ references: email: jeroen@berkeley.edu orcid: https://orcid.org/0000-0002-4035-0289 year: '2024' + doi: 10.32614/CRAN.package.rsvg - type: software title: svglite abstract: 'svglite: An ''SVG'' Graphics Device' @@ -249,6 +286,7 @@ references: given-names: Vaudor email: lise.vaudor@ens-lyon.fr year: '2024' + doi: 10.32614/CRAN.package.svglite - type: software title: tabula abstract: 'tabula: Analysis and Visualization of Archaeological Count Data' @@ -261,8 +299,9 @@ references: email: nicolas.frerebeau@u-bordeaux-montaigne.fr orcid: https://orcid.org/0000-0001-5759-4944 affiliation: Université Bordeaux Montaigne - version: '>= 3.0.1' year: '2024' + doi: 10.32614/CRAN.package.tabula + version: '>= 3.1.0' - type: software title: tinysnapshot abstract: 'tinysnapshot: Snapshots for Unit Tests using the ''tinytest'' Framework' @@ -275,6 +314,7 @@ references: email: vincent.arel-bundock@umontreal.ca orcid: https://orcid.org/0000-0003-2042-7063 year: '2024' + doi: 10.32614/CRAN.package.tinysnapshot - type: software title: tinytest abstract: 'tinytest: Lightweight and Feature Complete Unit Testing Framework' @@ -282,39 +322,11 @@ references: url: https://github.com/markvanderloo/tinytest repository: https://CRAN.R-project.org/package=tinytest authors: - - family-names: van der Loo + - family-names: Loo given-names: Mark + name-particle: van der email: mark.vanderloo@gmail.com orcid: https://orcid.org/0000-0002-9807-4686 year: '2024' -identifiers: -- description: The concept DOI. - type: doi - value: 10.5281/zenodo.5653896 -- description: The versioned DOI for version 1.0.0. - type: doi - value: 10.5281/zenodo.5653897 -- description: The versioned DOI for version 1.0.1. - type: doi - value: 10.5281/zenodo.6349207 -- description: The versioned DOI for version 1.1.0. - type: doi - value: 10.5281/zenodo.6659732 -- description: The versioned DOI for version 1.2.0. - type: doi - value: 10.5281/zenodo.7307327 -- description: The versioned DOI for version 2.0.0. - type: doi - value: 10.5281/zenodo.8301347 -- description: The versioned DOI for version 2.0.1. - type: doi - value: 10.5281/zenodo.8318621 -- description: The versioned DOI for version 2.0.2. - type: doi - value: 10.5281/zenodo.10209640 -- description: The versioned DOI for version 2.1.0. - type: doi - value: 10.5281/zenodo.10711260 -- description: The Software Heritage identifier for version 1.0.1. - type: swh - value: swh:1:rel:508add25987e0fc9f3f29793df5578337ae2c338 + doi: 10.32614/CRAN.package.tinytest + diff --git a/DESCRIPTION b/DESCRIPTION index 0a3085e..aba4686 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,11 +1,11 @@ Package: kairos Title: Analysis of Chronological Patterns from Archaeological Count Data -Version: 2.1.0.9000 +Version: 2.1.1 Authors@R: c( person("Nicolas", "Frerebeau", , "nicolas.frerebeau@u-bordeaux-montaigne.fr", role = c("aut", "cre"), comment = c(ORCID = "0000-0001-5759-4944", affiliation = "Université Bordeaux Montaigne")), person("Brice", "Lebrun", , "brice.lebrun@u-bordeaux-montaigne.fr", role = "ctb", - comment = c(ORCID = "0000-0001-7503-8685", affiliation = "Université Bordeaux Montaigne")), + comment = c(ORCID = "0000-0001-7503-8685", "Logo designer")), person("Ben", "Marwick", , "bmarwick@uw.edu", role = "ctb", comment = c(ORCID = "0000-0001-7879-4531", affiliation = "University of Washington")), person("Anne", "Philippe", , "anne.philippe@univ-nantes.fr", role = "ctb", @@ -27,7 +27,7 @@ Depends: R (>= 3.5), dimensio (>= 0.8.0) Imports: - aion (>= 1.0.3), + aion (>= 1.0.4), arkhe (>= 1.6.0), extraDistr, grDevices, @@ -47,7 +47,7 @@ VignetteBuilder: knitr Encoding: UTF-8 Roxygen: list(markdown = TRUE) -RoxygenNote: 7.3.0 +RoxygenNote: 7.3.2 Collate: 'AllClasses.R' 'AllGenerics.R' diff --git a/NEWS.md b/NEWS.md index e86b60b..22220a5 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,4 +1,6 @@ -# kairos 2.1.0.9000 +# kairos 2.1.1 +## Internals +* Use latest dependencies. # kairos 2.1.0 ## New classes and methods diff --git a/R/kairos-package.R b/R/kairos-package.R index 56ad8e0..5b31499 100644 --- a/R/kairos-package.R +++ b/R/kairos-package.R @@ -2,7 +2,7 @@ #' \tabular{ll}{ #' **Package:** \tab kairos \cr #' **Type:** \tab Package \cr -#' **Version:** \tab 2.1.0 \cr +#' **Version:** \tab 2.1.1 \cr #' **License:** \tab GPL-3 \cr #' } #' @@ -18,7 +18,7 @@ #' #' \tabular{ll}{ #' Nicolas Frerebeau \tab *Université Bordeaux Montaigne, France* \cr -#' Brice Lebrun \tab *Université Bordeaux Montaigne, France* \cr +#' Brice Lebrun \tab \cr #' Ben Marwick \tab *University of Washington, USA* \cr #' Anne Philippe \tab *Université de Nantes, France* \cr #' } diff --git a/README.Rmd b/README.Rmd index db97db4..08e0416 100644 --- a/README.Rmd +++ b/README.Rmd @@ -21,7 +21,7 @@ Sys.setlocale("LC_MESSAGES", 'en_GB.UTF-8') # Force locale [![R-CMD-check](https://github.com/tesselle/kairos/workflows/R-CMD-check/badge.svg)](https://github.com/tesselle/kairos/actions) [![codecov](https://codecov.io/gh/tesselle/kairos/branch/master/graph/badge.svg)](https://app.codecov.io/gh/tesselle/kairos) [![CodeFactor](https://www.codefactor.io/repository/github/tesselle/kairos/badge)](https://www.codefactor.io/repository/github/tesselle/kairos) -[![Dependencies](https://tinyverse.netlify.com/badge/kairos)](https://cran.r-project.org/package=kairos) +[![Dependencies](https://tinyverse.netlify.app/badge/kairos)](https://cran.r-project.org/package=kairos) [![r-universe](https://tesselle.r-universe.dev/badges/kairos)](https://tesselle.r-universe.dev/kairos){.pkgdown-devel} [![CRAN Version](http://www.r-pkg.org/badges/version/kairos)](https://cran.r-project.org/package=kairos){.pkgdown-release} @@ -45,8 +45,11 @@ A convenient and reproducible toolkit for relative and absolute dating and analy [**tabula**](https://packages.tesselle.org/tabula/) is a companion package to **kairos** that provides functions for visualization and analysis of archaeological count data. -```{r citation, echo=FALSE, comment=''} -utils::citation("kairos") +--- + +```{r citation, echo=FALSE, comment='', results='asis'} +cite <- utils::citation("kairos") +print(cite, bibtex = FALSE) ``` ## Installation diff --git a/README.md b/README.md index e55add1..5456483 100644 --- a/README.md +++ b/README.md @@ -8,7 +8,7 @@ [![R-CMD-check](https://github.com/tesselle/kairos/workflows/R-CMD-check/badge.svg)](https://github.com/tesselle/kairos/actions) [![codecov](https://codecov.io/gh/tesselle/kairos/branch/master/graph/badge.svg)](https://app.codecov.io/gh/tesselle/kairos) [![CodeFactor](https://www.codefactor.io/repository/github/tesselle/kairos/badge)](https://www.codefactor.io/repository/github/tesselle/kairos) -[![Dependencies](https://tinyverse.netlify.com/badge/kairos)](https://cran.r-project.org/package=kairos) +[![Dependencies](https://tinyverse.netlify.app/badge/kairos)](https://cran.r-project.org/package=kairos) , R package version 2.1.0, - . +To cite kairos in publications use: - A BibTeX entry for LaTeX users is +Frerebeau N (2024). *kairos: Analysis of Chronological Patterns from +Archaeological Count Data*. Université Bordeaux Montaigne, Pessac, +France. +, R package version 2.1.1, +. - @Manual{R-kairos, - author = {Nicolas Frerebeau}, - title = {{kairos: Analysis of Chronological Patterns from Archaeological Count Data}}, - year = {2024}, - organization = {Université Bordeaux Montaigne}, - address = {Pessac, France}, - note = {R package version 2.1.0}, - url = {https://packages.tesselle.org/kairos/}, - doi = {10.5281/zenodo.5653896}, - } - - This package is a part of the tesselle project - . +This package is a part of the tesselle project +. ## Installation @@ -144,7 +133,8 @@ to this project, you agree to abide by its terms. ## References -
+
diff --git a/codemeta.json b/codemeta.json index 3d95623..6b6eac1 100644 --- a/codemeta.json +++ b/codemeta.json @@ -8,13 +8,13 @@ "codeRepository": "https://github.com/tesselle/kairos", "issueTracker": "https://github.com/tesselle/kairos/issues", "license": "https://spdx.org/licenses/GPL-3.0", - "version": "2.1.0.9000", + "version": "2.1.1", "programmingLanguage": { "@type": "ComputerLanguage", "name": "R", "url": "https://r-project.org" }, - "runtimePlatform": "R version 4.3.2 (2023-10-31)", + "runtimePlatform": "R version 4.4.1 (2024-06-14)", "provider": { "@id": "https://cran.r-project.org", "@type": "Organization", @@ -138,7 +138,7 @@ "@type": "SoftwareApplication", "identifier": "tabula", "name": "tabula", - "version": ">= 3.0.1", + "version": ">= 3.1.0", "provider": { "@id": "https://cran.r-project.org", "@type": "Organization", @@ -183,7 +183,7 @@ "@type": "SoftwareApplication", "identifier": "dimensio", "name": "dimensio", - "version": ">= 0.6.0", + "version": ">= 0.8.0", "provider": { "@id": "https://cran.r-project.org", "@type": "Organization", @@ -196,7 +196,7 @@ "@type": "SoftwareApplication", "identifier": "aion", "name": "aion", - "version": ">= 1.0.2", + "version": ">= 1.0.4", "provider": { "@id": "https://cran.r-project.org", "@type": "Organization", @@ -252,7 +252,7 @@ }, "SystemRequirements": null }, - "fileSize": "707.044KB", + "fileSize": "707.351KB", "citation": [ { "@type": "SoftwareSourceCode", @@ -267,7 +267,7 @@ "name": "{kairos: Analysis of Chronological Patterns from Archaeological Count Data}", "identifier": "10.5281/zenodo.5653896", "url": "https://packages.tesselle.org/kairos/", - "description": "R package version 2.1.0.9000", + "description": "R package version 2.1.1", "@id": "https://doi.org/10.5281/zenodo.5653896", "sameAs": "https://doi.org/10.5281/zenodo.5653896" } diff --git a/man/figures/README-aoristic-2.png b/man/figures/README-aoristic-2.png index f1dfa29..afe8f5b 100644 Binary files a/man/figures/README-aoristic-2.png and b/man/figures/README-aoristic-2.png differ diff --git a/man/kairos-package.Rd b/man/kairos-package.Rd index 4278ecb..8256a2e 100644 --- a/man/kairos-package.Rd +++ b/man/kairos-package.Rd @@ -14,7 +14,7 @@ A toolkit for absolute and relative dating and analysis of chronological pattern \tabular{ll}{ \strong{Package:} \tab kairos \cr \strong{Type:} \tab Package \cr -\strong{Version:} \tab 2.1.0 \cr +\strong{Version:} \tab 2.1.1 \cr \strong{License:} \tab GPL-3 \cr } } @@ -43,7 +43,7 @@ Useful links: \tabular{ll}{ Nicolas Frerebeau \tab \emph{Université Bordeaux Montaigne, France} \cr -Brice Lebrun \tab \emph{Université Bordeaux Montaigne, France} \cr +Brice Lebrun \tab \cr Ben Marwick \tab \emph{University of Washington, USA} \cr Anne Philippe \tab \emph{Université de Nantes, France} \cr }