From 1de9ed4c3ebb22f50a421bfe8f4cf934ee349593 Mon Sep 17 00:00:00 2001 From: tanguyduval Date: Mon, 8 Oct 2018 15:37:58 +0200 Subject: [PATCH] Update README.md --- README.md | 16 ++++++++++++++-- 1 file changed, 14 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 216ce8bc..fba6e03d 100644 --- a/README.md +++ b/README.md @@ -18,12 +18,24 @@ docker run -it -v C:\Users\TONIC\code\spm12:/spm12 -v F:\STEMRI_NIFTI_RAW:/bids ```` #### GUI: -install Xserveur (Xming on windows) +###### Windows +1. install Xserveur (Xming on windows) +2. ```` export IP = ??? -docker run -it -v C:\Users\code\spm12:/spm12 --entrypoint "/spm12/spm_standalone_linux/run_spm12.sh" -e DISPLAY=$IP:0 spm12 /opt/mcr/v92 eval cfg_ui +docker run -it -v C:\Users\TONIC\data\ds001378:bids -v C:\Users\TONIC\code\spm12:/spm12 --entrypoint "/spm12/spm_standalone_linux/run_spm12.sh" -e DISPLAY=$IP:0 spm12 /opt/mcr/v92 eval cfg_ui ```` +###### MacOs +1. Install Xquartz +2. Determine your IP `IP=$(ifconfig en0 | grep inet | awk '$1=="inet" {print $2}')` +3. Add your IP to Xquartz `xhost + $IP` +4. +```` +docker run -it -v /Users/TONIC/data/ds001378:bids /Users/TONIC/code/spm12 --entrypoint "/spm12/spm_standalone_linux/run_spm12.sh" -e DISPLAY=$IP:0 spm12 /opt/mcr/v92 eval cfg_ui +```` + + ## Compile spm12 using a docker with matlab compiled in it ```` docker run -it -v C:\Users\code\spm12:/spm12 --entrypoint "/spm_make_standalone.sh" myrepo/matlab