sphinx.yml

name: "QSAR CI/CD Pipeline"

on:
    push:
        branches:
            - main
            - develop
    pull_request:
        branches:
            - main
            - develop
    release:
        types: [ created ]

permissions:
    contents: write

jobs:
    lint-and-static-analysis:
        runs-on: ubuntu-latest
        steps:
            -   uses: actions/checkout@v4
            -   name: Set up Python
                uses: actions/setup-python@v4
                with:
                    python-version: '3.10'
            -   name: Upgrade pip
                run: python -m pip install --upgrade pip
            -   name: Install dependencies
                run: |
                    python -m pip install --upgrade pip
                    pip install flake8 pylint black isort
            -   name: Run Linters and Static Analysis
                continue-on-error: true
                run: |
                    flake8 qsar/ tests/
                    pylint qsar/ tests/
                    black qsar/ tests/ --check
                    isort qsar/ tests/ --check-only

    unit-tests-and-coverage:
        needs: lint-and-static-analysis
        runs-on: ubuntu-latest
        steps:
            -   uses: actions/checkout@v4
            -   name: Set up Python
                uses: actions/setup-python@v4
                with:
                    python-version: '3.10'
            -   name: Install dependencies
                uses: py-actions/py-dependency-install@v4
                with:
                    path: "requirements.txt"
            -   name: Run unit tests with pytest
                run: |
                    pip install pytest pytest-cov
                    pytest tests/ --cov=qsar --cov-report=xml --cov-report=html

    security-scan:
        needs: unit-tests-and-coverage
        runs-on: ubuntu-latest
        steps:
            -   uses: actions/checkout@v4
            -   name: Set up Python
                uses: actions/setup-python@v4
                with:
                    python-version: '3.10'
            -   name: Install Safety
                run: |
                    pip install safety
            -   name: Run Safety to check dependencies for security vulnerabilities
                continue-on-error: true
                run: |
                    safety check

    build-deploy-docs:
        needs: security-scan
        runs-on: ubuntu-latest
        steps:
            -   uses: actions/checkout@v4
            -   name: Set up Python
                uses: actions/setup-python@v4
                with:
                    python-version: '3.10'
            -   name: Install dependencies
                uses: py-actions/py-dependency-install@v4
                with:
                    path: "requirements.txt"
            -   name: Sphinx build
                run: |
                    sphinx-build docs _build
            -   name: Deploy to GitHub Pages
                uses: peaceiris/actions-gh-pages@v3
                if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }}
                with:
                    publish_branch: gh-pages
                    github_token: ${{ secrets.GITHUB_TOKEN }}
                    publish_dir: _build/
                    force_orphan: true