From aa4ece0688f9388ac5179a429246f2cf40f274d6 Mon Sep 17 00:00:00 2001
From: Ivica Ceraj <iceraj@gmail.com>
Date: Wed, 4 Sep 2013 16:29:46 -0400
Subject: [PATCH] Update.

---
 .classpath                                    |   1 +
 .settings/com.google.gwt.eclipse.core.prefs   |   2 +-
 .../genetics/Stargenetics_gwt_java.gwt.xml    |  12 +-
 .../genetics}/beans/JavaBeans.gwt.xml         |   2 +-
 .../genetics}/beans/PropertyChangeEvent.java  |   2 +-
 .../beans/PropertyChangeListener.java         |   3 +-
 .../beans/PropertyChangeSupport.java          |   4 +-
 .../genetics}/beans/StringTokenizer.java      |   2 +-
 .../client/Stargenetics_gwt_java.java         | 131 +----
 .../genetic/impl/CreatureSetImpl.java         |   6 +-
 src/star/genetics/genetic/impl/RuleImpl.java  |   2 +-
 src/star/genetics/parser/EngineParser.java    |  46 ++
 src/star/genetics/parser/GenomeParser.java    |  75 +++
 src/star/genetics/parser/ModelParser.java     |  49 ++
 .../genetics/parser/PhenotypeRulesParser.java |  45 ++
 .../genetics/parser/VisualizerParser.java     |  18 +
 .../genetics/utils/PropertyChangeRaiser.java  |   3 +-
 .../star/genetics/tests/setupmodel.json       |  64 +++
 test/star/genetics/tests/SetupModel.java      |  37 ++
 test/star/genetics/tests/ToJSON.java          |  40 ++
 test/star/genetics/tests/setupmodel.json      |  64 +++
 ...4F90E89AD961B49B56FF39C9B0D4613.cache.html | 451 ----------------
 ...7B3ED58228A47ADF3B6C2FCB2FEB64F.cache.html | 464 -----------------
 ...A22CFA6C5FC806BE4E7675E10012783.cache.html | 475 -----------------
 ...93DDC2D1A1CEE51C76F8F0BF233FC57.cache.html | 481 -----------------
 ...915C834D89A24C70BF22596EC3F80A0.cache.html | 490 ------------------
 ...B85208609937CB03861ACB89CBF33B8.cache.html | 463 -----------------
 .../stargenetics_gwt_java.nocache.js          |  18 -
 .../rpcPolicyManifest/manifest.txt            |   2 +
 .../39D4114873E80B8BB2D606FE14058A3C.txt      |   2 +
 .../A3FF39165C3DD226FF9F5022E50A1694.txt      |   2 +
 .../250774B171C57E8BA39B144956DFE885.gwt.rpc  |  69 +++
 .../AF08CD0D494A2913F68E033D78EC60B1.gwt.rpc  |  68 +++
 .../clear.cache.gif                           | Bin
 .../gwt/clean/clean.css                       |   0
 .../gwt/clean/clean_rtl.css                   |   0
 .../gwt/clean/images/circles.png              | Bin
 .../gwt/clean/images/circles_ie6.png          | Bin
 .../gwt/clean/images/corner.png               | Bin
 .../gwt/clean/images/corner_ie6.png           | Bin
 .../gwt/clean/images/hborder.png              | Bin
 .../gwt/clean/images/hborder_ie6.png          | Bin
 .../gwt/clean/images/thumb_horz.png           | Bin
 .../gwt/clean/images/thumb_vertical.png       | Bin
 .../gwt/clean/images/vborder.png              | Bin
 .../gwt/clean/images/vborder_ie6.png          | Bin
 .../hosted.html                               |   0
 .../junit-standards.html                      |  68 +++
 .../junit.html                                |  66 +++
 ...ics.StarGenetics_gwt_java.JUnit.nocache.js |  17 +
 50 files changed, 765 insertions(+), 2979 deletions(-)
 rename src/{java => star/genetics}/beans/JavaBeans.gwt.xml (81%)
 rename src/{java => star/genetics}/beans/PropertyChangeEvent.java (94%)
 rename src/{java => star/genetics}/beans/PropertyChangeListener.java (77%)
 rename src/{java => star/genetics}/beans/PropertyChangeSupport.java (83%)
 rename src/{java => star/genetics}/beans/StringTokenizer.java (94%)
 create mode 100644 src/star/genetics/parser/EngineParser.java
 create mode 100644 src/star/genetics/parser/GenomeParser.java
 create mode 100644 src/star/genetics/parser/ModelParser.java
 create mode 100644 src/star/genetics/parser/PhenotypeRulesParser.java
 create mode 100644 src/star/genetics/parser/VisualizerParser.java
 create mode 100644 test-classes/star/genetics/tests/setupmodel.json
 create mode 100644 test/star/genetics/tests/SetupModel.java
 create mode 100644 test/star/genetics/tests/ToJSON.java
 create mode 100644 test/star/genetics/tests/setupmodel.json
 delete mode 100644 war/stargenetics_gwt_java/A4F90E89AD961B49B56FF39C9B0D4613.cache.html
 delete mode 100644 war/stargenetics_gwt_java/A7B3ED58228A47ADF3B6C2FCB2FEB64F.cache.html
 delete mode 100644 war/stargenetics_gwt_java/DA22CFA6C5FC806BE4E7675E10012783.cache.html
 delete mode 100644 war/stargenetics_gwt_java/E93DDC2D1A1CEE51C76F8F0BF233FC57.cache.html
 delete mode 100644 war/stargenetics_gwt_java/F915C834D89A24C70BF22596EC3F80A0.cache.html
 delete mode 100644 war/stargenetics_gwt_java/FB85208609937CB03861ACB89CBF33B8.cache.html
 delete mode 100644 war/stargenetics_gwt_java/stargenetics_gwt_java.nocache.js
 create mode 100644 www-test/WEB-INF/deploy/star.genetics.StarGenetics_gwt_java.JUnit/rpcPolicyManifest/manifest.txt
 create mode 100644 www-test/WEB-INF/deploy/star.genetics.StarGenetics_gwt_java.JUnit/rpcPolicyManifest/manifests/39D4114873E80B8BB2D606FE14058A3C.txt
 create mode 100644 www-test/WEB-INF/deploy/star.genetics.StarGenetics_gwt_java.JUnit/rpcPolicyManifest/manifests/A3FF39165C3DD226FF9F5022E50A1694.txt
 create mode 100644 www-test/star.genetics.StarGenetics_gwt_java.JUnit/250774B171C57E8BA39B144956DFE885.gwt.rpc
 create mode 100644 www-test/star.genetics.StarGenetics_gwt_java.JUnit/AF08CD0D494A2913F68E033D78EC60B1.gwt.rpc
 rename {war/stargenetics_gwt_java => www-test/star.genetics.StarGenetics_gwt_java.JUnit}/clear.cache.gif (100%)
 rename {war/stargenetics_gwt_java => www-test/star.genetics.StarGenetics_gwt_java.JUnit}/gwt/clean/clean.css (100%)
 rename {war/stargenetics_gwt_java => www-test/star.genetics.StarGenetics_gwt_java.JUnit}/gwt/clean/clean_rtl.css (100%)
 rename {war/stargenetics_gwt_java => www-test/star.genetics.StarGenetics_gwt_java.JUnit}/gwt/clean/images/circles.png (100%)
 rename {war/stargenetics_gwt_java => www-test/star.genetics.StarGenetics_gwt_java.JUnit}/gwt/clean/images/circles_ie6.png (100%)
 rename {war/stargenetics_gwt_java => www-test/star.genetics.StarGenetics_gwt_java.JUnit}/gwt/clean/images/corner.png (100%)
 rename {war/stargenetics_gwt_java => www-test/star.genetics.StarGenetics_gwt_java.JUnit}/gwt/clean/images/corner_ie6.png (100%)
 rename {war/stargenetics_gwt_java => www-test/star.genetics.StarGenetics_gwt_java.JUnit}/gwt/clean/images/hborder.png (100%)
 rename {war/stargenetics_gwt_java => www-test/star.genetics.StarGenetics_gwt_java.JUnit}/gwt/clean/images/hborder_ie6.png (100%)
 rename {war/stargenetics_gwt_java => www-test/star.genetics.StarGenetics_gwt_java.JUnit}/gwt/clean/images/thumb_horz.png (100%)
 rename {war/stargenetics_gwt_java => www-test/star.genetics.StarGenetics_gwt_java.JUnit}/gwt/clean/images/thumb_vertical.png (100%)
 rename {war/stargenetics_gwt_java => www-test/star.genetics.StarGenetics_gwt_java.JUnit}/gwt/clean/images/vborder.png (100%)
 rename {war/stargenetics_gwt_java => www-test/star.genetics.StarGenetics_gwt_java.JUnit}/gwt/clean/images/vborder_ie6.png (100%)
 rename {war/stargenetics_gwt_java => www-test/star.genetics.StarGenetics_gwt_java.JUnit}/hosted.html (100%)
 create mode 100644 www-test/star.genetics.StarGenetics_gwt_java.JUnit/junit-standards.html
 create mode 100644 www-test/star.genetics.StarGenetics_gwt_java.JUnit/junit.html
 create mode 100644 www-test/star.genetics.StarGenetics_gwt_java.JUnit/star.genetics.StarGenetics_gwt_java.JUnit.nocache.js

diff --git a/.classpath b/.classpath
index a77e904..ee238e1 100644
--- a/.classpath
+++ b/.classpath
@@ -4,5 +4,6 @@
 	<classpathentry kind="src" output="test-classes" path="test"/>
 	<classpathentry kind="con" path="com.google.gwt.eclipse.core.GWT_CONTAINER"/>
 	<classpathentry kind="con" path="org.eclipse.jdt.launching.JRE_CONTAINER"/>
+	<classpathentry kind="con" path="org.eclipse.jdt.junit.JUNIT_CONTAINER/4"/>
 	<classpathentry kind="output" path="war/WEB-INF/classes"/>
 </classpath>
diff --git a/.settings/com.google.gwt.eclipse.core.prefs b/.settings/com.google.gwt.eclipse.core.prefs
index b898189..59b0b5f 100644
--- a/.settings/com.google.gwt.eclipse.core.prefs
+++ b/.settings/com.google.gwt.eclipse.core.prefs
@@ -1,3 +1,3 @@
 eclipse.preferences.version=1
 filesCopiedToWebInfLib=gwt-servlet.jar
-gwtCompileSettings=PGd3dC1jb21waWxlLXNldHRpbmdzPjxsb2ctbGV2ZWw+VFJBQ0U8L2xvZy1sZXZlbD48b3V0cHV0LXN0eWxlPk9CRlVTQ0FURUQ8L291dHB1dC1zdHlsZT48ZXh0cmEtYXJncz48IVtDREFUQVtdXT48L2V4dHJhLWFyZ3M+PHZtLWFyZ3M+PCFbQ0RBVEFbLVhteDUxMm1dXT48L3ZtLWFyZ3M+PGVudHJ5LXBvaW50LW1vZHVsZT5zdGFyLmdlbmV0aWNzLlN0YXJnZW5ldGljc19nd3RfamF2YTwvZW50cnktcG9pbnQtbW9kdWxlPjwvZ3d0LWNvbXBpbGUtc2V0dGluZ3M+
+gwtCompileSettings=PGd3dC1jb21waWxlLXNldHRpbmdzPjxsb2ctbGV2ZWw+REVCVUc8L2xvZy1sZXZlbD48b3V0cHV0LXN0eWxlPk9CRlVTQ0FURUQ8L291dHB1dC1zdHlsZT48ZXh0cmEtYXJncz48IVtDREFUQVtdXT48L2V4dHJhLWFyZ3M+PHZtLWFyZ3M+PCFbQ0RBVEFbLVhteDUxMm1dXT48L3ZtLWFyZ3M+PGVudHJ5LXBvaW50LW1vZHVsZT5zdGFyLmdlbmV0aWNzLlN0YXJnZW5ldGljc19nd3RfamF2YTwvZW50cnktcG9pbnQtbW9kdWxlPjwvZ3d0LWNvbXBpbGUtc2V0dGluZ3M+
diff --git a/src/star/genetics/Stargenetics_gwt_java.gwt.xml b/src/star/genetics/Stargenetics_gwt_java.gwt.xml
index 000498d..e168c8d 100644
--- a/src/star/genetics/Stargenetics_gwt_java.gwt.xml
+++ b/src/star/genetics/Stargenetics_gwt_java.gwt.xml
@@ -7,18 +7,18 @@
   "http://google-web-toolkit.googlecode.com/svn/tags/2.5.1/distro-source/core/src/gwt-module.dtd">
 <module rename-to='stargenetics_gwt_java'>
   <!-- Inherit the core Web Toolkit stuff.                        -->
-  <inherits name='com.google.gwt.user.User'/>
+     <inherits name='com.google.gwt.user.User'/> 
+     <!--   <inherits name="com.google.gwt.core.Core"/> -->
+  <inherits name="com.google.gwt.json.JSON" /> 
 
   <!-- Inherit the default GWT style sheet.  You can change       -->
   <!-- the theme of your GWT application by uncommenting          -->
   <!-- any one of the following lines.                            -->
-  <inherits name='com.google.gwt.user.theme.clean.Clean'/>
+  <!--   --><inherits name='com.google.gwt.user.theme.clean.Clean'/> -->
   <!-- <inherits name='com.google.gwt.user.theme.standard.Standard'/> -->
   <!-- <inherits name='com.google.gwt.user.theme.chrome.Chrome'/> -->
   <!-- <inherits name='com.google.gwt.user.theme.dark.Dark'/>     -->
 
-  <!-- Other module inherits                                      -->
-<inherits name="java.beans.JavaBeans"/>
   <!-- Specify the app entry point class.                         -->
   <entry-point class='star.genetics.client.Stargenetics_gwt_java'/>
 
@@ -29,5 +29,7 @@
   <source path='utils'/>
   <source path='visualizers'/>
   <source path='xls'/>
-
+  <source path='beans'/>
+  <source path='tests'/>
+  <source path='parser'/>
 </module>
diff --git a/src/java/beans/JavaBeans.gwt.xml b/src/star/genetics/beans/JavaBeans.gwt.xml
similarity index 81%
rename from src/java/beans/JavaBeans.gwt.xml
rename to src/star/genetics/beans/JavaBeans.gwt.xml
index 1836147..bdfd4d3 100644
--- a/src/java/beans/JavaBeans.gwt.xml
+++ b/src/star/genetics/beans/JavaBeans.gwt.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" encoding="UTF-8"?>
 <!DOCTYPE module PUBLIC "-//Google Inc.//DTD Google Web Toolkit 2.5.1//EN" "http://google-web-toolkit.googlecode.com/svn/tags/2.5.1/distro-source/core/src/gwt-module.dtd">
 <module>
-	<inherits name="com.google.gwt.user.User" />
+	<!--   <inherits name="com.google.gwt.user.User" /> -->
 	<source path=""/>
 </module>
\ No newline at end of file
diff --git a/src/java/beans/PropertyChangeEvent.java b/src/star/genetics/beans/PropertyChangeEvent.java
similarity index 94%
rename from src/java/beans/PropertyChangeEvent.java
rename to src/star/genetics/beans/PropertyChangeEvent.java
index ca35931..d5fddb7 100644
--- a/src/java/beans/PropertyChangeEvent.java
+++ b/src/star/genetics/beans/PropertyChangeEvent.java
@@ -1,4 +1,4 @@
-package java.beans;
+package star.genetics.beans;
 
 public class PropertyChangeEvent
 {
diff --git a/src/java/beans/PropertyChangeListener.java b/src/star/genetics/beans/PropertyChangeListener.java
similarity index 77%
rename from src/java/beans/PropertyChangeListener.java
rename to src/star/genetics/beans/PropertyChangeListener.java
index 9c1e482..1809b7e 100644
--- a/src/java/beans/PropertyChangeListener.java
+++ b/src/star/genetics/beans/PropertyChangeListener.java
@@ -1,7 +1,6 @@
-package java.beans;
+package star.genetics.beans;
 
 public interface PropertyChangeListener
 {
     public void propertyChange(PropertyChangeEvent e);
-
 }
diff --git a/src/java/beans/PropertyChangeSupport.java b/src/star/genetics/beans/PropertyChangeSupport.java
similarity index 83%
rename from src/java/beans/PropertyChangeSupport.java
rename to src/star/genetics/beans/PropertyChangeSupport.java
index ecb47c8..458bdf6 100644
--- a/src/java/beans/PropertyChangeSupport.java
+++ b/src/star/genetics/beans/PropertyChangeSupport.java
@@ -1,4 +1,4 @@
-package java.beans;
+package star.genetics.beans;
 
 import java.util.ArrayList;
 
@@ -22,7 +22,7 @@ public void firePropertyChange(PropertyChangeEvent propertyChangeEvent)
 		
     }
 
-	public void addPropertyChangeListener(PropertyChangeListener listener)
+	public void addPropertyChangeListener(star.genetics.beans.PropertyChangeListener listener)
     {
 		listeners.add(listener);
     }
diff --git a/src/java/beans/StringTokenizer.java b/src/star/genetics/beans/StringTokenizer.java
similarity index 94%
rename from src/java/beans/StringTokenizer.java
rename to src/star/genetics/beans/StringTokenizer.java
index 724ae68..d6508d8 100644
--- a/src/java/beans/StringTokenizer.java
+++ b/src/star/genetics/beans/StringTokenizer.java
@@ -1,4 +1,4 @@
-package java.beans;
+package star.genetics.beans;
 
 public class StringTokenizer
 {
diff --git a/src/star/genetics/client/Stargenetics_gwt_java.java b/src/star/genetics/client/Stargenetics_gwt_java.java
index a3a7c51..05fb320 100644
--- a/src/star/genetics/client/Stargenetics_gwt_java.java
+++ b/src/star/genetics/client/Stargenetics_gwt_java.java
@@ -10,20 +10,6 @@
 import star.genetics.shared.FieldVerifier;
 
 import com.google.gwt.core.client.EntryPoint;
-import com.google.gwt.core.client.GWT;
-import com.google.gwt.event.dom.client.ClickEvent;
-import com.google.gwt.event.dom.client.ClickHandler;
-import com.google.gwt.event.dom.client.KeyCodes;
-import com.google.gwt.event.dom.client.KeyUpEvent;
-import com.google.gwt.event.dom.client.KeyUpHandler;
-import com.google.gwt.user.client.rpc.AsyncCallback;
-import com.google.gwt.user.client.ui.Button;
-import com.google.gwt.user.client.ui.DialogBox;
-import com.google.gwt.user.client.ui.HTML;
-import com.google.gwt.user.client.ui.Label;
-import com.google.gwt.user.client.ui.RootPanel;
-import com.google.gwt.user.client.ui.TextBox;
-import com.google.gwt.user.client.ui.VerticalPanel;
 
 /**
  * Entry point classes define <code>onModuleLoad()</code>.
@@ -44,9 +30,9 @@ public void test2()
 		test(self, me);
 	}
 	
-	public static int add(int a,int b)
+	public static String add(int a,int b)
 	{
-		return a+b;
+		return "" + a+b;
 	}
 
 	public native void test(Object self, MatingEngine me)
@@ -54,6 +40,7 @@ public native void test(Object self, MatingEngine me)
 		$wnd.__sg_entry_point = self;
 		$wnd.__sg_me = me;
 		$wnd.__sg_add = $entry(@star.genetics.client.Stargenetics_gwt_java::add(II));
+		console.info( "Done!" );
 		return "Not A Number";
 	}-*/;
 
@@ -62,108 +49,14 @@ public native void test(Object self, MatingEngine me)
 	 */
 	public void onModuleLoad()
 	{
-		final Button sendButton = new Button("Send");
-		final TextBox nameField = new TextBox();
-		nameField.setText("GWT User");
-		final Label errorLabel = new Label();
-
-		// We can add style names to widgets
-		sendButton.addStyleName("sendButton");
-
-		// Add the nameField and sendButton to the RootPanel
-		// Use RootPanel.get() to get the entire body element
-		RootPanel.get("nameFieldContainer").add(nameField);
-		RootPanel.get("sendButtonContainer").add(sendButton);
-		RootPanel.get("errorLabelContainer").add(errorLabel);
-
-		// Focus the cursor on the name field when the app loads
-		nameField.setFocus(true);
-		nameField.selectAll();
-
-		// Create the popup dialog box
-		final DialogBox dialogBox = new DialogBox();
-		dialogBox.setText("Remote Procedure Call");
-		dialogBox.setAnimationEnabled(true);
-		final Button closeButton = new Button("Close");
-		// We can set the id of a widget by accessing its Element
-		closeButton.getElement().setId("closeButton");
-		final Label textToServerLabel = new Label();
-		final HTML serverResponseLabel = new HTML();
-		VerticalPanel dialogVPanel = new VerticalPanel();
-		dialogVPanel.addStyleName("dialogVPanel");
-		dialogVPanel.add(new HTML("<b>Sending name to the server:</b>"));
-		dialogVPanel.add(textToServerLabel);
-		dialogVPanel.add(new HTML("<br><b>Server replies:</b>"));
-		dialogVPanel.add(serverResponseLabel);
-		dialogVPanel.setHorizontalAlignment(VerticalPanel.ALIGN_RIGHT);
-		dialogVPanel.add(closeButton);
-		dialogBox.setWidget(dialogVPanel);
-		test2();
-		// Add a handler to close the DialogBox
-		closeButton.addClickHandler(new ClickHandler()
-		{
-			public void onClick(ClickEvent event)
-			{
-				dialogBox.hide();
-				sendButton.setEnabled(true);
-				sendButton.setFocus(true);
-
-			}
-		});
-
-		// Create a handler for the sendButton and nameField
-		class MyHandler implements ClickHandler, KeyUpHandler
-		{
-			/**
-			 * Fired when the user clicks on the sendButton.
-			 */
-			public void onClick(ClickEvent event)
-			{
-				sendNameToServer();
-				MatingEngineImpl_XY xy = new MatingEngineImpl_XY();
-				ModelImpl impl = new ModelImpl();
-				GenomeImpl genome = new GenomeImpl();
-				ChromosomeImpl c = new ChromosomeImpl("name", genome);
-				GeneImpl g = new GeneImpl("test", 2, c);
-				impl.setGenome(genome);
-				System.out.println(impl);
-			}
-
-			/**
-			 * Fired when the user types in the nameField.
-			 */
-			public void onKeyUp(KeyUpEvent event)
-			{
-				if (event.getNativeKeyCode() == KeyCodes.KEY_ENTER)
-				{
-					sendNameToServer();
-				}
-			}
-
-			/**
-			 * Send the name from the nameField to the server and wait for a response.
-			 */
-			private void sendNameToServer()
-			{
-				// First, we validate the input.
-				errorLabel.setText("");
-				String textToServer = nameField.getText();
-				if (!FieldVerifier.isValidName(textToServer))
-				{
-					errorLabel.setText("Please enter at least four characters");
-					return;
-				}
-
-				// Then, we send the input to the server.
-				sendButton.setEnabled(false);
-				textToServerLabel.setText(textToServer);
-				serverResponseLabel.setText("");
-			}
-		}
-
-		// Add a handler to send the name to the server
-		MyHandler handler = new MyHandler();
-		sendButton.addClickHandler(handler);
-		nameField.addKeyUpHandler(handler);
+		MatingEngineImpl_XY xy = new MatingEngineImpl_XY();
+		ModelImpl impl = new ModelImpl();
+		GenomeImpl genome = new GenomeImpl();
+		ChromosomeImpl c = new ChromosomeImpl("name", genome);
+		GeneImpl g = new GeneImpl("test", 2, c);
+		impl.setGenome(genome);
+		impl.setMater(xy);
+		System.out.println(impl);
+		test(this,xy);
 	}
 }
diff --git a/src/star/genetics/genetic/impl/CreatureSetImpl.java b/src/star/genetics/genetic/impl/CreatureSetImpl.java
index c3e1099..fa13402 100644
--- a/src/star/genetics/genetic/impl/CreatureSetImpl.java
+++ b/src/star/genetics/genetic/impl/CreatureSetImpl.java
@@ -1,12 +1,12 @@
 package star.genetics.genetic.impl;
 
-import java.beans.PropertyChangeEvent;
-import java.beans.PropertyChangeListener;
-import java.beans.PropertyChangeSupport;
 import java.io.Serializable;
 import java.util.ArrayList;
 import java.util.Iterator;
 
+import star.genetics.beans.PropertyChangeEvent;
+import star.genetics.beans.PropertyChangeListener;
+import star.genetics.beans.PropertyChangeSupport;
 import star.genetics.genetic.model.Creature;
 
 public class CreatureSetImpl implements star.genetics.genetic.model.CreatureSet, Serializable
diff --git a/src/star/genetics/genetic/impl/RuleImpl.java b/src/star/genetics/genetic/impl/RuleImpl.java
index 4566c27..dd9a8ec 100644
--- a/src/star/genetics/genetic/impl/RuleImpl.java
+++ b/src/star/genetics/genetic/impl/RuleImpl.java
@@ -3,8 +3,8 @@
 import java.io.Serializable;
 import java.util.ArrayList;
 import java.util.HashMap;
-import java.beans.StringTokenizer;
 
+import star.genetics.beans.StringTokenizer;
 import star.genetics.client.Messages;
 import star.genetics.genetic.model.Allele;
 import star.genetics.genetic.model.Chromosome;
diff --git a/src/star/genetics/parser/EngineParser.java b/src/star/genetics/parser/EngineParser.java
new file mode 100644
index 0000000..3f1fc11
--- /dev/null
+++ b/src/star/genetics/parser/EngineParser.java
@@ -0,0 +1,46 @@
+package star.genetics.parser;
+
+import com.google.gwt.json.client.JSONNumber;
+import com.google.gwt.json.client.JSONObject;
+
+import star.genetics.genetic.impl.MatingEngineImpl_XY;
+import star.genetics.genetic.impl.ModelImpl;
+
+public class EngineParser
+{
+	public static void parse(ModelImpl model, JSONObject engine)
+	{
+		String sex_type = engine.get("sex_type").isString().toString();
+		if ("xy".equalsIgnoreCase(sex_type))
+		{
+			parse_XY(model, engine);
+		}
+	}
+
+	private static float get(JSONObject obj, String key, float default_value)
+	{
+		float ret = default_value;
+		if (obj.containsKey(key))
+		{
+			JSONNumber n = obj.get(key).isNumber();
+			if (n != null)
+			{
+				ret = (float) n.doubleValue();
+			}
+		}
+		return ret;
+	}
+
+	private static void parse_XY(ModelImpl model, JSONObject engine)
+	{
+		float maleRecombinationRate = get(engine, "male_recombination_rate", 1.0f);
+		float femaleRecombinationRate = get(engine, "female_recombination_rate", 1.0f);
+		float femaleSexRatio = get(engine, "female_sex_ratio", 1.0f);
+		int progeniesCount = Math.round(get(engine, "avg_offspring_count", 50.0f));
+		float twinningFrequency = get(engine, "twinning", 0.0f);
+		float identicalTwinsFrequency = get(engine, "identical_twins_frequency", 0.0f);
+
+		MatingEngineImpl_XY xy = new MatingEngineImpl_XY(maleRecombinationRate, femaleRecombinationRate, femaleSexRatio, progeniesCount, twinningFrequency, identicalTwinsFrequency);
+		model.setMater(xy);
+	}
+}
diff --git a/src/star/genetics/parser/GenomeParser.java b/src/star/genetics/parser/GenomeParser.java
new file mode 100644
index 0000000..c726143
--- /dev/null
+++ b/src/star/genetics/parser/GenomeParser.java
@@ -0,0 +1,75 @@
+package star.genetics.parser;
+
+import star.genetics.genetic.impl.AlleleImpl;
+import star.genetics.genetic.impl.ChromosomeImpl;
+import star.genetics.genetic.impl.GeneImpl;
+import star.genetics.genetic.impl.GenomeImpl;
+import star.genetics.genetic.impl.ModelImpl;
+
+import com.google.gwt.json.client.JSONArray;
+import com.google.gwt.json.client.JSONObject;
+
+public class GenomeParser
+{
+
+	public static void parse(ModelImpl model, JSONObject genome)
+    {
+		GenomeImpl ret = new GenomeImpl();
+		parseChromosomes( ret , genome.get("chromosomes").isObject());
+		model.setGenome(ret);
+    }
+
+
+	private static void parseChromosomes(GenomeImpl genome, JSONObject chromosomes)
+    {
+	    for( String chromosome_id : chromosomes.keySet() ) {
+	    	ChromosomeImpl c = new ChromosomeImpl(chromosome_id, genome);
+	    	parseChromosome( c, chromosomes.get(chromosome_id).isObject() );
+	    }
+    }
+
+
+	private static void parseChromosome(ChromosomeImpl c, JSONObject chromosome)
+    {
+		String name = chromosome.get("name").isString().toString();
+		parseGenes( c , chromosome.get("genes").isArray());
+    }
+
+
+	private static void parseGenes(ChromosomeImpl c, JSONArray genes)
+    {
+		for( int i = 0 ; i < genes.size() ; i++)
+		{
+			JSONObject gene = genes.get(i).isObject();
+			parseGene( c , gene );
+		}
+	    
+    }
+
+
+	private static void parseGene(ChromosomeImpl c, JSONObject gene)
+    {
+		String name = gene.get("name").isString().toString();
+		float position = (float)gene.get("position").isNumber().doubleValue();
+		GeneImpl g = new GeneImpl(name, position, c);
+		parseAlleles( g , gene.get("alleles").isArray());
+    }
+
+
+	private static void parseAlleles(GeneImpl gene, JSONArray alleles)
+    {
+		for( int i = 0 ; i < alleles.size() ; i++ )
+		{
+			parseAllele( gene , alleles.get(i).isObject());
+		}
+    }
+
+
+	private static void parseAllele(GeneImpl gene, JSONObject allele)
+    {
+		String name = allele.get("name").isString().toString();
+		AlleleImpl a = new AlleleImpl(name, gene);
+    }
+
+
+}
diff --git a/src/star/genetics/parser/ModelParser.java b/src/star/genetics/parser/ModelParser.java
new file mode 100644
index 0000000..9fede9b
--- /dev/null
+++ b/src/star/genetics/parser/ModelParser.java
@@ -0,0 +1,49 @@
+package star.genetics.parser;
+
+import com.google.gwt.json.client.JSONArray;
+import com.google.gwt.json.client.JSONObject;
+import com.google.gwt.json.client.JSONParser;
+import com.google.gwt.json.client.JSONValue;
+
+import star.genetics.genetic.impl.AlleleImpl;
+import star.genetics.genetic.impl.ChromosomeImpl;
+import star.genetics.genetic.impl.GeneImpl;
+import star.genetics.genetic.impl.GenomeImpl;
+import star.genetics.genetic.impl.ModelImpl;
+import star.genetics.genetic.model.Model;
+
+public class ModelParser
+{
+	static JSONObject getTop(String json)
+	{
+		JSONValue top = JSONParser.parseStrict(json);
+		return top.isObject();
+	}
+
+
+	private static void parse(ModelImpl model, JSONObject top)
+    {
+		parseGenetics( model , top.get("genetics").isObject());
+    }
+
+	
+	private static void parseGenetics(ModelImpl model, JSONObject genetics)
+    {
+		VisualizerParser.parse( model, genetics.get("visualizer").isObject());
+		GenomeParser.parse(model,genetics.get("genome").isObject());
+		EngineParser.parse(model,genetics.get("engine").isObject());
+		PhenotypeRulesParser.parse(model,genetics.get("phenotype_rules").isArray());		
+    }
+
+
+	
+
+	public static Model parse( String json )
+	{
+		ModelImpl model = new ModelImpl();
+		JSONObject top = getTop(json);
+		parse( model, top );
+		return model;
+	}
+
+}
diff --git a/src/star/genetics/parser/PhenotypeRulesParser.java b/src/star/genetics/parser/PhenotypeRulesParser.java
new file mode 100644
index 0000000..5f10c99
--- /dev/null
+++ b/src/star/genetics/parser/PhenotypeRulesParser.java
@@ -0,0 +1,45 @@
+package star.genetics.parser;
+
+import java.util.HashMap;
+
+import star.genetics.genetic.impl.ModelImpl;
+import star.genetics.genetic.impl.RuleImpl;
+import star.genetics.genetic.impl.RuleSetImpl;
+import star.genetics.genetic.model.Genome;
+import star.genetics.genetic.model.Rule;
+
+import com.google.gwt.json.client.JSONArray;
+import com.google.gwt.json.client.JSONObject;
+
+public class PhenotypeRulesParser
+{
+
+	public static void parse(ModelImpl model, JSONArray rules)
+    {
+		RuleSetImpl set = new RuleSetImpl();
+		for( int i = 0 ; i < rules.size(); i++)
+		{
+			JSONObject rule = rules.get(i).isObject();
+			set.add(parseRule( set , rule , model.getGenome()));
+		}
+		model.setRules(set);
+    }
+
+	private static Rule parseRule(RuleSetImpl set, JSONObject rule, Genome genome)
+    {
+		String matches = rule.get("matches").isString().toString();
+		HashMap<String,String> phenotype = parsePhenotype( rule.get("phenotype").isObject());
+		return new RuleImpl(matches, phenotype , genome) ;
+    }
+
+	private static HashMap<String, String> parsePhenotype(JSONObject object)
+    {
+		HashMap<String, String> ret = new HashMap<String, String>();
+		for(String key : object.keySet() )
+		{
+			ret.put( key , object.get(key).toString());
+		}
+		return ret;
+    }
+
+}
diff --git a/src/star/genetics/parser/VisualizerParser.java b/src/star/genetics/parser/VisualizerParser.java
new file mode 100644
index 0000000..a1fa976
--- /dev/null
+++ b/src/star/genetics/parser/VisualizerParser.java
@@ -0,0 +1,18 @@
+package star.genetics.parser;
+
+import com.google.gwt.json.client.JSONObject;
+
+import star.genetics.genetic.impl.ModelImpl;
+
+public class VisualizerParser
+{
+	public static void parse(ModelImpl model, JSONObject visualizer)
+    {
+		String visualizer_name = visualizer.get("name").isString().stringValue();
+		if("fly".equalsIgnoreCase(visualizer_name))
+		{
+			model.setVisualizerClass("star.genetics.visualizers.Fly");
+		}	    
+    }
+
+}
diff --git a/src/star/genetics/utils/PropertyChangeRaiser.java b/src/star/genetics/utils/PropertyChangeRaiser.java
index eb662ff..5276fd4 100644
--- a/src/star/genetics/utils/PropertyChangeRaiser.java
+++ b/src/star/genetics/utils/PropertyChangeRaiser.java
@@ -1,6 +1,7 @@
 package star.genetics.utils;
 
-import java.beans.PropertyChangeListener;
+import star.genetics.beans.PropertyChangeListener;
+
 
 /**
  * Adds support for addPropertyChangeListener and removePropertyChangeListener
diff --git a/test-classes/star/genetics/tests/setupmodel.json b/test-classes/star/genetics/tests/setupmodel.json
new file mode 100644
index 0000000..fc9b6b3
--- /dev/null
+++ b/test-classes/star/genetics/tests/setupmodel.json
@@ -0,0 +1,64 @@
+{
+    "genetics": {
+        "visualizer": {"name":"fly"},
+        "genome": {
+            "chromosomes": {
+                "C_1": {
+                    "name": "Chromosome 1",
+                    "genes": [
+                        { "name": "red_eyes",
+                            "position": 25,
+                            "alleles": [
+                                {"name": "A"},
+                                {"name": "a"}
+                            ]
+                        },
+                        { "name": "wingless",
+                            "position": 40,
+                            "alleles": [
+                                {"name": "B"},
+                                {"name": "b"}
+                            ]
+                        }
+
+                    ]
+                }
+            }
+        },
+        "engine": {
+            "sex_type": "XY",
+            "male_recombination_rate": 1,
+            "female_recombination_rate": 1,
+            "female_sex_ratio":.51,
+            "twinning": 0,
+            "identical_twins_frequency": 0,
+            "avg_offspring_count": 50
+        },
+        "experiments": {},
+        "phenotype_rules": [
+            { "name": "default",
+                "matches": "*",
+                "phenotype": {
+                    "wings": 1,
+                    "eyes": "red"
+                }
+            },
+            {
+                "name": "white eyes",
+                "matches": "aa",
+                "phenotype": {
+                    "eyes": "white"
+                }
+            },
+            {
+                "name": "wingless",
+                "matches": "bb",
+                "phenotype": {
+                    "wings": 0
+                }
+            }
+        ],
+        "gel_rules": {},
+        "model_metadata": {}
+    }
+}
\ No newline at end of file
diff --git a/test/star/genetics/tests/SetupModel.java b/test/star/genetics/tests/SetupModel.java
new file mode 100644
index 0000000..419172a
--- /dev/null
+++ b/test/star/genetics/tests/SetupModel.java
@@ -0,0 +1,37 @@
+package star.genetics.tests;
+
+import static org.junit.Assert.*;
+
+import org.json.JSONException;
+import org.json.JSONObject;
+
+import star.genetics.genetic.model.Model;
+import star.genetics.parser.ModelParser;
+
+import com.google.gwt.junit.client.GWTTestCase;
+
+public class SetupModel extends GWTTestCase
+{
+	String getJson()
+	{
+		// getJSON("setupmodel.json");
+		return "{\"genetics\":{\"visualizer\":{\"name\":\"fly\"},\"model_metadata\":{},\"experiments\":{},\"engine\":{\"sex_type\":\"XY\",\"male_recombination_rate\":1,\"female_sex_ratio\":0.51,\"avg_offspring_count\":50,\"female_recombination_rate\":1,\"twinning\":0,\"identical_twins_frequency\":0},\"gel_rules\":{},\"phenotype_rules\":[{\"matches\":\"*\",\"name\":\"default\",\"phenotype\":{\"wings\":1,\"eyes\":\"red\"}},{\"matches\":\"aa\",\"name\":\"white eyes\",\"phenotype\":{\"eyes\":\"white\"}},{\"matches\":\"bb\",\"name\":\"wingless\",\"phenotype\":{\"wings\":0}}],\"genome\":{\"chromosomes\":{\"C_1\":{\"genes\":[{\"position\":25,\"alleles\":[{\"name\":\"A\"},{\"name\":\"a\"}],\"name\":\"red_eyes\"},{\"position\":40,\"alleles\":[{\"name\":\"B\"},{\"name\":\"b\"}],\"name\":\"wingless\"}],\"name\":\"Chromosome 1\"}}}}}\n";
+	}
+
+	public void test()
+	{
+		Model m = ModelParser.parse(getJson());
+		System.out.println( m.getGenome() );
+		assertNotNull(m.getGenome());
+		assertNotNull(m.getMatingEngine());
+		assertNotNull(m.getRules());
+
+	}
+
+	@Override
+	public String getModuleName()
+	{
+		return "star.genetics.StarGenetics_gwt_java";
+	}
+
+}
diff --git a/test/star/genetics/tests/ToJSON.java b/test/star/genetics/tests/ToJSON.java
new file mode 100644
index 0000000..ddfe351
--- /dev/null
+++ b/test/star/genetics/tests/ToJSON.java
@@ -0,0 +1,40 @@
+package star.genetics.tests;
+
+import java.io.IOException;
+import java.io.InputStream;
+
+import org.json.JSONException;
+import org.json.JSONObject;
+
+public class ToJSON
+{
+	static String getJSON(String name)
+	{
+		InputStream is = ToJSON.class.getResourceAsStream(name);
+		byte[] c;
+		try
+		{
+			c = new byte[is.available()];
+			is.read(c);
+			String json = new String(c);
+			JSONObject data;
+			data = new JSONObject(json);
+			return data.toString();
+		}
+		catch (JSONException e)
+		{
+			e.printStackTrace();
+			return e.toString();
+		}
+		catch (IOException e)
+		{
+			e.printStackTrace();
+			return e.toString();
+		}
+	}
+
+	public static void main(String[] args)
+    {
+	    System.out.println(getJSON("setupmodel.json"));
+    }
+}
diff --git a/test/star/genetics/tests/setupmodel.json b/test/star/genetics/tests/setupmodel.json
new file mode 100644
index 0000000..fc9b6b3
--- /dev/null
+++ b/test/star/genetics/tests/setupmodel.json
@@ -0,0 +1,64 @@
+{
+    "genetics": {
+        "visualizer": {"name":"fly"},
+        "genome": {
+            "chromosomes": {
+                "C_1": {
+                    "name": "Chromosome 1",
+                    "genes": [
+                        { "name": "red_eyes",
+                            "position": 25,
+                            "alleles": [
+                                {"name": "A"},
+                                {"name": "a"}
+                            ]
+                        },
+                        { "name": "wingless",
+                            "position": 40,
+                            "alleles": [
+                                {"name": "B"},
+                                {"name": "b"}
+                            ]
+                        }
+
+                    ]
+                }
+            }
+        },
+        "engine": {
+            "sex_type": "XY",
+            "male_recombination_rate": 1,
+            "female_recombination_rate": 1,
+            "female_sex_ratio":.51,
+            "twinning": 0,
+            "identical_twins_frequency": 0,
+            "avg_offspring_count": 50
+        },
+        "experiments": {},
+        "phenotype_rules": [
+            { "name": "default",
+                "matches": "*",
+                "phenotype": {
+                    "wings": 1,
+                    "eyes": "red"
+                }
+            },
+            {
+                "name": "white eyes",
+                "matches": "aa",
+                "phenotype": {
+                    "eyes": "white"
+                }
+            },
+            {
+                "name": "wingless",
+                "matches": "bb",
+                "phenotype": {
+                    "wings": 0
+                }
+            }
+        ],
+        "gel_rules": {},
+        "model_metadata": {}
+    }
+}
\ No newline at end of file
diff --git a/war/stargenetics_gwt_java/A4F90E89AD961B49B56FF39C9B0D4613.cache.html b/war/stargenetics_gwt_java/A4F90E89AD961B49B56FF39C9B0D4613.cache.html
deleted file mode 100644
index 3258d11..0000000
--- a/war/stargenetics_gwt_java/A4F90E89AD961B49B56FF39C9B0D4613.cache.html
+++ /dev/null
@@ -1,451 +0,0 @@
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diff --git a/www-test/WEB-INF/deploy/star.genetics.StarGenetics_gwt_java.JUnit/rpcPolicyManifest/manifest.txt b/www-test/WEB-INF/deploy/star.genetics.StarGenetics_gwt_java.JUnit/rpcPolicyManifest/manifest.txt
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--- /dev/null
+++ b/www-test/WEB-INF/deploy/star.genetics.StarGenetics_gwt_java.JUnit/rpcPolicyManifest/manifest.txt
@@ -0,0 +1,2 @@
+# Module star.genetics.StarGenetics_gwt_java.JUnit
+# RPC service class, partial path of RPC policy file
diff --git a/www-test/WEB-INF/deploy/star.genetics.StarGenetics_gwt_java.JUnit/rpcPolicyManifest/manifests/39D4114873E80B8BB2D606FE14058A3C.txt b/www-test/WEB-INF/deploy/star.genetics.StarGenetics_gwt_java.JUnit/rpcPolicyManifest/manifests/39D4114873E80B8BB2D606FE14058A3C.txt
new file mode 100644
index 0000000..a51da54
--- /dev/null
+++ b/www-test/WEB-INF/deploy/star.genetics.StarGenetics_gwt_java.JUnit/rpcPolicyManifest/manifests/39D4114873E80B8BB2D606FE14058A3C.txt
@@ -0,0 +1,2 @@
+serviceClass: com.google.gwt.junit.client.impl.JUnitHost
+path: AF08CD0D494A2913F68E033D78EC60B1.gwt.rpc
diff --git a/www-test/WEB-INF/deploy/star.genetics.StarGenetics_gwt_java.JUnit/rpcPolicyManifest/manifests/A3FF39165C3DD226FF9F5022E50A1694.txt b/www-test/WEB-INF/deploy/star.genetics.StarGenetics_gwt_java.JUnit/rpcPolicyManifest/manifests/A3FF39165C3DD226FF9F5022E50A1694.txt
new file mode 100644
index 0000000..82a17c2
--- /dev/null
+++ b/www-test/WEB-INF/deploy/star.genetics.StarGenetics_gwt_java.JUnit/rpcPolicyManifest/manifests/A3FF39165C3DD226FF9F5022E50A1694.txt
@@ -0,0 +1,2 @@
+serviceClass: com.google.gwt.junit.client.impl.JUnitHost
+path: 250774B171C57E8BA39B144956DFE885.gwt.rpc
diff --git a/www-test/star.genetics.StarGenetics_gwt_java.JUnit/250774B171C57E8BA39B144956DFE885.gwt.rpc b/www-test/star.genetics.StarGenetics_gwt_java.JUnit/250774B171C57E8BA39B144956DFE885.gwt.rpc
new file mode 100644
index 0000000..152cbd6
--- /dev/null
+++ b/www-test/star.genetics.StarGenetics_gwt_java.JUnit/250774B171C57E8BA39B144956DFE885.gwt.rpc
@@ -0,0 +1,69 @@
+com.google.gwt.event.shared.UmbrellaException, false, false, true, true, com.google.gwt.event.shared.UmbrellaException/3104463596, 3104463596
+com.google.gwt.http.client.RequestException, false, false, true, true, com.google.gwt.http.client.RequestException/190587325, 190587325
+com.google.gwt.json.client.JSONException, false, false, true, true, com.google.gwt.json.client.JSONException/2941795468, 2941795468
+com.google.gwt.jsonp.client.TimeoutException, false, false, true, true, com.google.gwt.jsonp.client.TimeoutException/1112787596, 1112787596
+com.google.gwt.junit.client.TimeoutException, true, true, true, true, com.google.gwt.junit.client.TimeoutException/1599913304, 1599913304
+com.google.gwt.junit.client.impl.ExceptionWrapper, false, false, true, true, com.google.gwt.junit.client.impl.ExceptionWrapper/657858793, 657858793
+com.google.gwt.junit.client.impl.JUnitHost, false, false, false, false, _, 86023109
+com.google.gwt.junit.client.impl.JUnitHost$ClientInfo, false, false, true, true, com.google.gwt.junit.client.impl.JUnitHost$ClientInfo/1355526973, 1355526973
+com.google.gwt.junit.client.impl.JUnitHost$InitialResponse, true, true, false, false, com.google.gwt.junit.client.impl.JUnitHost$InitialResponse/3853795919, 3853795919
+com.google.gwt.junit.client.impl.JUnitHost$TestBlock, true, true, false, false, com.google.gwt.junit.client.impl.JUnitHost$TestBlock/1313545657, 1313545657
+com.google.gwt.junit.client.impl.JUnitHost$TestInfo, true, true, true, true, com.google.gwt.junit.client.impl.JUnitHost$TestInfo/393346509, 393346509
+[Lcom.google.gwt.junit.client.impl.JUnitHost$TestInfo;, true, true, false, false, [Lcom.google.gwt.junit.client.impl.JUnitHost$TestInfo;/2459359249, 2459359249
+com.google.gwt.junit.client.impl.JUnitResult, false, false, true, true, com.google.gwt.junit.client.impl.JUnitResult/2699351021, 2699351021
+com.google.gwt.user.client.rpc.IncompatibleRemoteServiceException, true, true, true, true, com.google.gwt.user.client.rpc.IncompatibleRemoteServiceException/3936916533, 3936916533
+com.google.gwt.user.client.rpc.InvocationException, false, false, true, false, com.google.gwt.user.client.rpc.InvocationException/1510557512, 1510557512
+com.google.gwt.user.client.rpc.RpcTokenException, true, true, true, true, com.google.gwt.user.client.rpc.RpcTokenException/2345075298, 2345075298
+com.google.gwt.user.client.rpc.SerializableException, false, false, true, true, com.google.gwt.user.client.rpc.SerializableException/3047383460, 3047383460
+com.google.gwt.user.client.rpc.SerializationException, false, false, true, true, com.google.gwt.user.client.rpc.SerializationException/2836333220, 2836333220
+com.google.gwt.user.client.rpc.SerializedTypeViolationException, false, false, true, true, com.google.gwt.user.client.rpc.SerializedTypeViolationException/914601580, 914601580
+com.google.gwt.user.client.rpc.ServiceDefTarget$NoServiceEntryPointSpecifiedException, false, false, true, true, com.google.gwt.user.client.rpc.ServiceDefTarget$NoServiceEntryPointSpecifiedException/3408313447, 3408313447
+com.google.gwt.user.client.rpc.XsrfToken, false, false, true, true, com.google.gwt.user.client.rpc.XsrfToken/4254043109, 4254043109
+com.google.web.bindery.event.shared.UmbrellaException, false, false, true, true, com.google.web.bindery.event.shared.UmbrellaException/1025846929, 1025846929
+java.io.IOException, false, false, true, true, java.io.IOException/1159940531, 1159940531
+java.io.UnsupportedEncodingException, false, false, true, true, java.io.UnsupportedEncodingException/1526756933, 1526756933
+java.lang.ArithmeticException, false, false, true, true, java.lang.ArithmeticException/1539622151, 1539622151
+java.lang.ArrayIndexOutOfBoundsException, false, false, true, true, java.lang.ArrayIndexOutOfBoundsException/600550433, 600550433
+java.lang.ArrayStoreException, false, false, true, true, java.lang.ArrayStoreException/3540507190, 3540507190
+java.lang.AssertionError, false, false, true, true, java.lang.AssertionError/3490171458, 3490171458
+java.lang.Boolean, false, false, true, true, java.lang.Boolean/476441737, 476441737
+java.lang.ClassCastException, false, false, true, true, java.lang.ClassCastException/702295179, 702295179
+java.lang.Error, false, false, true, true, java.lang.Error/1331973429, 1331973429
+java.lang.Exception, true, false, true, true, java.lang.Exception/1920171873, 1920171873
+java.lang.IllegalArgumentException, false, false, true, true, java.lang.IllegalArgumentException/1755012560, 1755012560
+java.lang.IllegalStateException, false, false, true, true, java.lang.IllegalStateException/1972187323, 1972187323
+java.lang.IndexOutOfBoundsException, false, false, true, true, java.lang.IndexOutOfBoundsException/2489527753, 2489527753
+java.lang.NegativeArraySizeException, false, false, true, true, java.lang.NegativeArraySizeException/3846860241, 3846860241
+java.lang.NoSuchMethodException, false, false, true, true, java.lang.NoSuchMethodException/260969707, 260969707
+java.lang.NullPointerException, false, false, true, true, java.lang.NullPointerException/1463492344, 1463492344
+java.lang.NumberFormatException, false, false, true, true, java.lang.NumberFormatException/3305228476, 3305228476
+java.lang.RuntimeException, true, false, true, true, java.lang.RuntimeException/515124647, 515124647
+java.lang.StackTraceElement, false, false, true, true, java.lang.StackTraceElement/455763907, 455763907
+[Ljava.lang.StackTraceElement;, false, false, true, true, [Ljava.lang.StackTraceElement;/3867167983, 3867167983
+java.lang.String, true, true, true, true, java.lang.String/2004016611, 2004016611
+java.lang.StringIndexOutOfBoundsException, false, false, true, true, java.lang.StringIndexOutOfBoundsException/500777603, 500777603
+java.lang.Throwable, true, false, true, true, java.lang.Throwable/2953622131, 2953622131
+java.lang.UnsupportedOperationException, false, false, true, true, java.lang.UnsupportedOperationException/3744010015, 3744010015
+java.lang.annotation.AnnotationFormatError, false, false, true, true, java.lang.annotation.AnnotationFormatError/2257184627, 2257184627
+java.lang.annotation.AnnotationTypeMismatchException, false, false, true, true, java.lang.annotation.AnnotationTypeMismatchException/976205828, 976205828
+java.security.DigestException, false, false, true, true, java.security.DigestException/629316798, 629316798
+java.security.GeneralSecurityException, false, false, true, true, java.security.GeneralSecurityException/2669239907, 2669239907
+java.security.NoSuchAlgorithmException, false, false, true, true, java.security.NoSuchAlgorithmException/2892037213, 2892037213
+java.util.Collections$EmptySet, false, false, true, true, java.util.Collections$EmptySet/3523698179, 3523698179
+java.util.ConcurrentModificationException, false, false, true, true, java.util.ConcurrentModificationException/2717383897, 2717383897
+java.util.EmptyStackException, false, false, true, true, java.util.EmptyStackException/89438517, 89438517
+java.util.HashMap, false, false, true, true, java.util.HashMap/1797211028, 1797211028
+java.util.HashSet, false, false, true, true, java.util.HashSet/3273092938, 3273092938
+java.util.LinkedHashMap, false, false, true, true, java.util.LinkedHashMap/3008245022, 3008245022
+java.util.LinkedHashSet, false, false, true, true, java.util.LinkedHashSet/1826081506, 1826081506
+java.util.NoSuchElementException, false, false, true, true, java.util.NoSuchElementException/1559248883, 1559248883
+java.util.TooManyListenersException, false, false, true, true, java.util.TooManyListenersException/2023078032, 2023078032
+java.util.TreeMap, false, false, true, true, java.util.TreeMap/1493889780, 1493889780
+java.util.TreeSet, false, false, true, true, java.util.TreeSet/4043497002, 4043497002
+javax.validation.ConstraintDeclarationException, false, false, true, true, javax.validation.ConstraintDeclarationException/3610544007, 3610544007
+javax.validation.ConstraintDefinitionException, false, false, true, true, javax.validation.ConstraintDefinitionException/3732439488, 3732439488
+javax.validation.ConstraintViolationException, false, false, true, true, javax.validation.ConstraintViolationException/1185386591, 1185386591
+javax.validation.GroupDefinitionException, false, false, true, true, javax.validation.GroupDefinitionException/4024780846, 4024780846
+javax.validation.UnexpectedTypeException, false, false, true, true, javax.validation.UnexpectedTypeException/593026390, 593026390
+javax.validation.ValidationException, false, false, true, true, javax.validation.ValidationException/1570221831, 1570221831
+junit.framework.AssertionFailedError, false, false, true, true, junit.framework.AssertionFailedError/3756236039, 3756236039
diff --git a/www-test/star.genetics.StarGenetics_gwt_java.JUnit/AF08CD0D494A2913F68E033D78EC60B1.gwt.rpc b/www-test/star.genetics.StarGenetics_gwt_java.JUnit/AF08CD0D494A2913F68E033D78EC60B1.gwt.rpc
new file mode 100644
index 0000000..bcf3687
--- /dev/null
+++ b/www-test/star.genetics.StarGenetics_gwt_java.JUnit/AF08CD0D494A2913F68E033D78EC60B1.gwt.rpc
@@ -0,0 +1,68 @@
+com.google.gwt.event.shared.UmbrellaException, false, false, true, true, com.google.gwt.event.shared.UmbrellaException/3104463596, 3104463596
+com.google.gwt.http.client.RequestException, false, false, true, true, com.google.gwt.http.client.RequestException/190587325, 190587325
+com.google.gwt.jsonp.client.TimeoutException, false, false, true, true, com.google.gwt.jsonp.client.TimeoutException/1112787596, 1112787596
+com.google.gwt.junit.client.TimeoutException, true, true, true, true, com.google.gwt.junit.client.TimeoutException/1599913304, 1599913304
+com.google.gwt.junit.client.impl.ExceptionWrapper, false, false, true, true, com.google.gwt.junit.client.impl.ExceptionWrapper/657858793, 657858793
+com.google.gwt.junit.client.impl.JUnitHost, false, false, false, false, _, 86023109
+com.google.gwt.junit.client.impl.JUnitHost$ClientInfo, false, false, true, true, com.google.gwt.junit.client.impl.JUnitHost$ClientInfo/1355526973, 1355526973
+com.google.gwt.junit.client.impl.JUnitHost$InitialResponse, true, true, false, false, com.google.gwt.junit.client.impl.JUnitHost$InitialResponse/3853795919, 3853795919
+com.google.gwt.junit.client.impl.JUnitHost$TestBlock, true, true, false, false, com.google.gwt.junit.client.impl.JUnitHost$TestBlock/1313545657, 1313545657
+com.google.gwt.junit.client.impl.JUnitHost$TestInfo, true, true, true, true, com.google.gwt.junit.client.impl.JUnitHost$TestInfo/393346509, 393346509
+[Lcom.google.gwt.junit.client.impl.JUnitHost$TestInfo;, true, true, false, false, [Lcom.google.gwt.junit.client.impl.JUnitHost$TestInfo;/2459359249, 2459359249
+com.google.gwt.junit.client.impl.JUnitResult, false, false, true, true, com.google.gwt.junit.client.impl.JUnitResult/2699351021, 2699351021
+com.google.gwt.user.client.rpc.IncompatibleRemoteServiceException, true, true, true, true, com.google.gwt.user.client.rpc.IncompatibleRemoteServiceException/3936916533, 3936916533
+com.google.gwt.user.client.rpc.InvocationException, false, false, true, false, com.google.gwt.user.client.rpc.InvocationException/1510557512, 1510557512
+com.google.gwt.user.client.rpc.RpcTokenException, true, true, true, true, com.google.gwt.user.client.rpc.RpcTokenException/2345075298, 2345075298
+com.google.gwt.user.client.rpc.SerializableException, false, false, true, true, com.google.gwt.user.client.rpc.SerializableException/3047383460, 3047383460
+com.google.gwt.user.client.rpc.SerializationException, false, false, true, true, com.google.gwt.user.client.rpc.SerializationException/2836333220, 2836333220
+com.google.gwt.user.client.rpc.SerializedTypeViolationException, false, false, true, true, com.google.gwt.user.client.rpc.SerializedTypeViolationException/914601580, 914601580
+com.google.gwt.user.client.rpc.ServiceDefTarget$NoServiceEntryPointSpecifiedException, false, false, true, true, com.google.gwt.user.client.rpc.ServiceDefTarget$NoServiceEntryPointSpecifiedException/3408313447, 3408313447
+com.google.gwt.user.client.rpc.XsrfToken, false, false, true, true, com.google.gwt.user.client.rpc.XsrfToken/4254043109, 4254043109
+com.google.web.bindery.event.shared.UmbrellaException, false, false, true, true, com.google.web.bindery.event.shared.UmbrellaException/1025846929, 1025846929
+java.io.IOException, false, false, true, true, java.io.IOException/1159940531, 1159940531
+java.io.UnsupportedEncodingException, false, false, true, true, java.io.UnsupportedEncodingException/1526756933, 1526756933
+java.lang.ArithmeticException, false, false, true, true, java.lang.ArithmeticException/1539622151, 1539622151
+java.lang.ArrayIndexOutOfBoundsException, false, false, true, true, java.lang.ArrayIndexOutOfBoundsException/600550433, 600550433
+java.lang.ArrayStoreException, false, false, true, true, java.lang.ArrayStoreException/3540507190, 3540507190
+java.lang.AssertionError, false, false, true, true, java.lang.AssertionError/3490171458, 3490171458
+java.lang.Boolean, false, false, true, true, java.lang.Boolean/476441737, 476441737
+java.lang.ClassCastException, false, false, true, true, java.lang.ClassCastException/702295179, 702295179
+java.lang.Error, false, false, true, true, java.lang.Error/1331973429, 1331973429
+java.lang.Exception, true, false, true, true, java.lang.Exception/1920171873, 1920171873
+java.lang.IllegalArgumentException, false, false, true, true, java.lang.IllegalArgumentException/1755012560, 1755012560
+java.lang.IllegalStateException, false, false, true, true, java.lang.IllegalStateException/1972187323, 1972187323
+java.lang.IndexOutOfBoundsException, false, false, true, true, java.lang.IndexOutOfBoundsException/2489527753, 2489527753
+java.lang.NegativeArraySizeException, false, false, true, true, java.lang.NegativeArraySizeException/3846860241, 3846860241
+java.lang.NoSuchMethodException, false, false, true, true, java.lang.NoSuchMethodException/260969707, 260969707
+java.lang.NullPointerException, false, false, true, true, java.lang.NullPointerException/1463492344, 1463492344
+java.lang.NumberFormatException, false, false, true, true, java.lang.NumberFormatException/3305228476, 3305228476
+java.lang.RuntimeException, true, false, true, true, java.lang.RuntimeException/515124647, 515124647
+java.lang.StackTraceElement, false, false, true, true, java.lang.StackTraceElement/455763907, 455763907
+[Ljava.lang.StackTraceElement;, false, false, true, true, [Ljava.lang.StackTraceElement;/3867167983, 3867167983
+java.lang.String, true, true, true, true, java.lang.String/2004016611, 2004016611
+java.lang.StringIndexOutOfBoundsException, false, false, true, true, java.lang.StringIndexOutOfBoundsException/500777603, 500777603
+java.lang.Throwable, true, false, true, true, java.lang.Throwable/2953622131, 2953622131
+java.lang.UnsupportedOperationException, false, false, true, true, java.lang.UnsupportedOperationException/3744010015, 3744010015
+java.lang.annotation.AnnotationFormatError, false, false, true, true, java.lang.annotation.AnnotationFormatError/2257184627, 2257184627
+java.lang.annotation.AnnotationTypeMismatchException, false, false, true, true, java.lang.annotation.AnnotationTypeMismatchException/976205828, 976205828
+java.security.DigestException, false, false, true, true, java.security.DigestException/629316798, 629316798
+java.security.GeneralSecurityException, false, false, true, true, java.security.GeneralSecurityException/2669239907, 2669239907
+java.security.NoSuchAlgorithmException, false, false, true, true, java.security.NoSuchAlgorithmException/2892037213, 2892037213
+java.util.Collections$EmptySet, false, false, true, true, java.util.Collections$EmptySet/3523698179, 3523698179
+java.util.ConcurrentModificationException, false, false, true, true, java.util.ConcurrentModificationException/2717383897, 2717383897
+java.util.EmptyStackException, false, false, true, true, java.util.EmptyStackException/89438517, 89438517
+java.util.HashMap, false, false, true, true, java.util.HashMap/1797211028, 1797211028
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diff --git a/war/stargenetics_gwt_java/clear.cache.gif b/www-test/star.genetics.StarGenetics_gwt_java.JUnit/clear.cache.gif
similarity index 100%
rename from war/stargenetics_gwt_java/clear.cache.gif
rename to www-test/star.genetics.StarGenetics_gwt_java.JUnit/clear.cache.gif
diff --git a/war/stargenetics_gwt_java/gwt/clean/clean.css b/www-test/star.genetics.StarGenetics_gwt_java.JUnit/gwt/clean/clean.css
similarity index 100%
rename from war/stargenetics_gwt_java/gwt/clean/clean.css
rename to www-test/star.genetics.StarGenetics_gwt_java.JUnit/gwt/clean/clean.css
diff --git a/war/stargenetics_gwt_java/gwt/clean/clean_rtl.css b/www-test/star.genetics.StarGenetics_gwt_java.JUnit/gwt/clean/clean_rtl.css
similarity index 100%
rename from war/stargenetics_gwt_java/gwt/clean/clean_rtl.css
rename to www-test/star.genetics.StarGenetics_gwt_java.JUnit/gwt/clean/clean_rtl.css
diff --git a/war/stargenetics_gwt_java/gwt/clean/images/circles.png b/www-test/star.genetics.StarGenetics_gwt_java.JUnit/gwt/clean/images/circles.png
similarity index 100%
rename from war/stargenetics_gwt_java/gwt/clean/images/circles.png
rename to www-test/star.genetics.StarGenetics_gwt_java.JUnit/gwt/clean/images/circles.png
diff --git a/war/stargenetics_gwt_java/gwt/clean/images/circles_ie6.png b/www-test/star.genetics.StarGenetics_gwt_java.JUnit/gwt/clean/images/circles_ie6.png
similarity index 100%
rename from war/stargenetics_gwt_java/gwt/clean/images/circles_ie6.png
rename to www-test/star.genetics.StarGenetics_gwt_java.JUnit/gwt/clean/images/circles_ie6.png
diff --git a/war/stargenetics_gwt_java/gwt/clean/images/corner.png b/www-test/star.genetics.StarGenetics_gwt_java.JUnit/gwt/clean/images/corner.png
similarity index 100%
rename from war/stargenetics_gwt_java/gwt/clean/images/corner.png
rename to www-test/star.genetics.StarGenetics_gwt_java.JUnit/gwt/clean/images/corner.png
diff --git a/war/stargenetics_gwt_java/gwt/clean/images/corner_ie6.png b/www-test/star.genetics.StarGenetics_gwt_java.JUnit/gwt/clean/images/corner_ie6.png
similarity index 100%
rename from war/stargenetics_gwt_java/gwt/clean/images/corner_ie6.png
rename to www-test/star.genetics.StarGenetics_gwt_java.JUnit/gwt/clean/images/corner_ie6.png
diff --git a/war/stargenetics_gwt_java/gwt/clean/images/hborder.png b/www-test/star.genetics.StarGenetics_gwt_java.JUnit/gwt/clean/images/hborder.png
similarity index 100%
rename from war/stargenetics_gwt_java/gwt/clean/images/hborder.png
rename to www-test/star.genetics.StarGenetics_gwt_java.JUnit/gwt/clean/images/hborder.png
diff --git a/war/stargenetics_gwt_java/gwt/clean/images/hborder_ie6.png b/www-test/star.genetics.StarGenetics_gwt_java.JUnit/gwt/clean/images/hborder_ie6.png
similarity index 100%
rename from war/stargenetics_gwt_java/gwt/clean/images/hborder_ie6.png
rename to www-test/star.genetics.StarGenetics_gwt_java.JUnit/gwt/clean/images/hborder_ie6.png
diff --git a/war/stargenetics_gwt_java/gwt/clean/images/thumb_horz.png b/www-test/star.genetics.StarGenetics_gwt_java.JUnit/gwt/clean/images/thumb_horz.png
similarity index 100%
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+
+http://www.apache.org/licenses/LICENSE-2.0
+
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+-->
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+</head>
+<body>
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+  if (badValue != null) {
+    msg += '" was set to the unexpected value "' + badValue + '"';
+  } else {
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+  }
+  msg += 'Allowed values: ' + allowedValues;
+  junitError(msg);
+}
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+  var xmlHttpRequest = window.XMLHttpRequest ? new XMLHttpRequest() : new ActiveXObject("Microsoft.XMLHTTP");
+  xmlHttpRequest.open('POST', 'junithost/loadError', true);
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+}
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+
+http://www.apache.org/licenses/LICENSE-2.0
+
+Unless required by applicable law or agreed to in writing, software
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+  junitError(msg);
+}
+
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+  xmlHttpRequest.send(msg);
+}
+
+function loadSelectionScript() {
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+    in order for this application to display correctly.
+  </div>
+</noscript>
+</body>
+</html>
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