diff --git a/README.md b/README.md index 41275e1..c21b68b 100644 --- a/README.md +++ b/README.md @@ -41,6 +41,7 @@ PsiCLASS depends on [pthreads](http://en.wikipedia.org/wiki/POSIX_Threads) and s -c FLOAT: only use the subexons with classifier score <= than the given number. (default: 0.05) --sa FLOAT: the minimum average number of supported read for retained introns (default: 0.5) --vd FLOAT : the minimum average coverage depth of a transcript to be reported in voting (defaults: 1.0) + --maxDpConstraintSize: the number of subexons a constraint can cover in DP. (default: 7. -1 for inf) --primaryParalog: use primary alignment to retain paralog genes (default: use unique alignments) --version: print version and exit --stage INT: (default: 0)