From d3cda3fa8cce08c02484498e907305ee0a70f866 Mon Sep 17 00:00:00 2001
From: Joshua Newton <joshuacwnewton@gmail.com>
Date: Tue, 7 Jan 2025 12:39:03 -0500
Subject: [PATCH] `build-ants.yml`: Add curl+unzip for prebuilt binaries

---
 .github/workflows/build-ants.yml | 21 ++++++++++++++++++---
 1 file changed, 18 insertions(+), 3 deletions(-)

diff --git a/.github/workflows/build-ants.yml b/.github/workflows/build-ants.yml
index 9c4f4b7..acc9159 100644
--- a/.github/workflows/build-ants.yml
+++ b/.github/workflows/build-ants.yml
@@ -26,9 +26,19 @@ jobs:
         echo "ARTIFACT=$OS" >> $GITHUB_ENV
     - name: package
       run: |
+        # download and extract pre-built ants
+        case "${{ env.ARTIFACT }}" in
+          ubuntu-latest)
+            URL="https://github.com/spinalcordtoolbox/build_ANTs/releases/download/r20220516-2/sct-apps_centos7.tar.gz"
+            ;;
+          macos-latest)
+            URL="https://github.com/spinalcordtoolbox/build_ANTs/releases/download/r20220516-2/sct-apps_macos-10.15.tar.gz"
+            ;;
+        curl -L "$URL" -o ants-unix.tar.gz
+        unzip ants-unix.tar.gz
         # snip out the apps we need for https://github.com/neuropoly/spinalcordtoolbox, since including all of ANTS is too much
         mkdir sct-apps/
-        cp antsbin/ANTS-build/Examples/{antsRegistration,antsSliceRegularizedRegistration,antsApplyTransforms,ComposeMultiTransform} sct-apps
+        cp ants-unix/ants-2.4.4/bin/{antsRegistration,antsSliceRegularizedRegistration,antsApplyTransforms,ComposeMultiTransform} sct-apps
         (cd sct-apps; for i in *; do mv $i isct_$i; done)
         cp COPYING.txt sct-apps
         tar -zcvf sct-apps_${{ env.ARTIFACT }}.tar.gz sct-apps/
@@ -51,9 +61,12 @@ jobs:
     steps:
     - name: package
       run: |
+        # download and extract pre-built ants
+        curl -L "https://github.com/ANTsX/ANTs/releases/download/v2.4.4/ants-2.4.4-centos7-X64-gcc.zip" -o ants-centos.tar.gz
+        unzip ants-centos.tar.gz
         # snip out the apps we need for https://github.com/neuropoly/spinalcordtoolbox, since including all of ANTS is too much
         mkdir sct-apps/
-        cp antsbin/ANTS-build/Examples/{antsRegistration,antsSliceRegularizedRegistration,antsApplyTransforms,ComposeMultiTransform} sct-apps
+        cp ants-centos/ants-2.4.4/bin/{antsRegistration,antsSliceRegularizedRegistration,antsApplyTransforms,ComposeMultiTransform} sct-apps
         (cd sct-apps; for i in `ls`; do mv $i isct_$i; done)
         cp COPYING.txt sct-apps
         tar -zcvf sct-apps_${{ env.ARTIFACT }}.tar.gz sct-apps/
@@ -84,9 +97,11 @@ jobs:
         echo "ARTIFACT=$OS" >> $GITHUB_ENV
     - name: package
       run: |
+        curl -L "https://github.com/ANTsX/ANTs/releases/download/v2.4.4/ants-2.4.4-ubuntu-22.04-X64-gcc.zip" -o ants-windows.tar.gz
+        unzip ants-windows.tar.gz
         # snip out the apps we need for https://github.com/neuropoly/spinalcordtoolbox, since including all of ANTS is too much
         mkdir sct-apps/
-        cp antsbin/ANTS-build/Examples/Release/{antsRegistration,antsSliceRegularizedRegistration,antsApplyTransforms,ComposeMultiTransform}.exe sct-apps
+        cp ants-windows/ants-2.4.4/bin/{antsRegistration,antsSliceRegularizedRegistration,antsApplyTransforms,ComposeMultiTransform}.exe sct-apps
         (cd sct-apps; for i in `ls`; do mv $i isct_$i; done)
         cp COPYING.txt sct-apps
         tar -zcvf sct-apps_${{ env.ARTIFACT }}.tar.gz sct-apps/