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Uploading models to Hugging Face Hub

Upload

Upload all pretrained hf_ehr models and tokenizers to the Hugging Face via:

python hf_upload.py

This script will:

  1. Create a new Hugging Face config
  2. Create a new Hugging Face model
  3. Create a new Hugging Face tokenizer
  4. Save the model and tokenizer to a local directory
  5. Upload the model and tokenizer to Hugging Face Hub

Usage

An example of how to use a pretrained hf_ehr model+tokenizer from Hugging Face to run inference on a patient can be found in hf_download.py. Simply run:

python hf_download.py

This script will:

  1. Download the model+tokenizer from Hugging Face Hub
  2. Tokenize a patient
  3. Run inference on the patient
  4. Print the patient representation